Wall clock time and date at job start Tue Mar 31 2020 15:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50694 * 120.00063 * 2 1 4 4 N 1.46500 * 109.47210 * 125.00211 * 3 2 1 5 5 C 1.34776 * 120.00232 * 180.02562 * 4 3 2 6 6 O 1.21606 * 120.00117 * 359.97438 * 5 4 3 7 7 C 1.47428 * 120.00068 * 180.02562 * 5 4 3 8 8 C 1.39973 * 120.61088 * 354.59099 * 7 5 4 9 9 C 1.38334 * 118.37182 * 180.02562 * 8 7 5 10 10 C 1.38367 * 119.50554 * 359.97438 * 9 8 7 11 11 N 1.31848 * 121.22007 * 0.02562 * 10 9 8 12 12 C 1.32429 * 121.77539 * 359.69823 * 11 10 9 13 13 N 1.38266 * 119.82754 * 180.31313 * 12 11 10 14 14 C 1.46955 * 110.99674 * 68.79691 * 13 12 11 15 15 C 1.53060 * 109.36381 * 176.81135 * 14 13 12 16 16 N 1.46952 * 109.36314 * 58.39430 * 15 14 13 17 17 C 1.46900 * 111.00211 * 176.81211 * 16 15 14 18 18 C 1.50705 * 109.46750 * 59.36542 * 17 16 15 19 19 H 1.07997 * 120.00254 * 355.20000 * 18 17 16 20 20 C 1.37878 * 119.99720 * 175.20696 * 18 17 16 21 21 N 1.31513 * 120.00158 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99560 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46981 * 89.99758 * 22 20 18 24 24 H 1.48505 * 109.47088 * 209.99347 * 22 20 18 25 25 H 1.48497 * 109.47456 * 329.99702 * 22 20 18 26 26 C 1.46954 * 110.88381 * 300.68426 * 16 15 14 27 27 C 1.46953 * 110.99997 * 304.99533 * 13 12 11 28 28 H 1.07999 * 120.00200 * 179.97438 * 1 2 3 29 29 H 1.08002 * 119.99783 * 0.02562 * 1 2 3 30 30 H 1.08002 * 119.99783 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47625 * 4.99951 * 3 2 1 32 32 H 1.09006 * 109.47392 * 244.99961 * 3 2 1 33 33 H 0.97002 * 119.99899 * 359.97438 * 4 3 2 34 34 H 1.08006 * 120.81477 * 359.97438 * 8 7 5 35 35 H 1.07998 * 120.24447 * 180.02562 * 9 8 7 36 36 H 1.08002 * 119.39124 * 180.02562 * 10 9 8 37 37 H 1.09000 * 109.48714 * 296.76984 * 14 13 12 38 38 H 1.08997 * 109.49286 * 56.84480 * 14 13 12 39 39 H 1.09001 * 109.48396 * 298.43547 * 15 14 13 40 40 H 1.08995 * 109.49012 * 178.36889 * 15 14 13 41 41 H 1.08991 * 109.47628 * 179.36421 * 17 16 15 42 42 H 1.09003 * 109.46964 * 299.37344 * 17 16 15 43 43 H 0.96999 * 119.99447 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.48697 * 299.35221 * 26 16 15 45 45 H 1.09005 * 109.48849 * 179.28813 * 26 16 15 46 46 H 1.09002 * 109.48968 * 303.15274 * 27 13 12 47 47 H 1.08991 * 109.48947 * 63.20078 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 3.7784 2.4089 1.3334 6 8 3.7144 3.3584 0.5764 7 6 4.7150 2.4356 2.4717 8 6 4.7210 1.4007 3.4142 9 6 5.6188 1.4730 4.4641 10 6 6.4777 2.5542 4.5531 11 7 6.4567 3.5194 3.6551 12 6 5.6217 3.4977 2.6274 13 7 5.6386 4.5283 1.7058 14 6 6.8780 4.5084 0.9163 15 6 6.8230 5.6122 -0.1426 16 7 6.6433 6.9126 0.5180 17 6 6.6613 8.0075 -0.4612 18 6 5.5545 7.8033 -1.4634 19 1 4.9524 6.9074 -1.4280 20 6 5.3106 8.7602 -2.4256 21 7 6.0434 9.8513 -2.4685 22 14 3.9391 8.5067 -3.6682 23 1 2.6761 9.0775 -3.1349 24 1 4.2915 9.1873 -4.9402 25 1 3.7592 7.0539 -3.9175 26 6 5.4040 6.9323 1.3075 27 6 5.4591 5.8286 2.3663 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3587 2.1316 0.0896 32 1 2.6214 1.4026 -0.9314 33 1 3.0446 0.5746 1.7355 34 1 4.0408 0.5666 3.3243 35 1 5.6497 0.6910 5.2082 36 1 7.1782 2.6086 5.3733 37 1 7.7307 4.6776 1.5739 38 1 6.9820 3.5400 0.4270 39 1 5.9863 5.4281 -0.8165 40 1 7.7533 5.6181 -0.7104 41 1 6.5151 8.9573 0.0530 42 1 7.6214 8.0176 -0.9773 43 1 5.8715 10.5247 -3.1452 44 1 4.5513 6.7633 0.6499 45 1 5.2999 7.9008 1.7967 46 1 4.5287 5.8227 2.9342 47 1 6.2954 6.0125 3.0406 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165056954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:29 Heat of formation + Delta-G solvation = 33.653234 kcal Electronic energy + Delta-G solvation = -28651.402193 eV Core-core repulsion = 24834.582486 eV Total energy + Delta-G solvation = -3816.819707 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.98359 -40.24708 -39.58902 -36.93792 -36.53581 -34.54782 -34.20809 -32.99912 -31.90806 -31.73085 -29.30574 -27.51042 -26.70597 -25.19111 -24.50721 -24.08987 -22.92746 -21.81431 -20.98986 -20.73168 -18.92796 -18.54004 -18.07454 -17.83159 -16.88945 -16.68454 -16.57254 -16.18179 -15.94669 -15.84878 -15.72394 -15.55342 -15.07477 -14.89071 -14.55950 -14.43253 -14.14882 -13.89571 -13.84199 -13.58660 -13.36306 -13.33475 -12.99722 -12.82984 -12.53796 -12.32337 -12.17760 -12.05132 -11.87166 -11.82692 -11.53706 -11.10897 -10.93554 -10.73098 -10.62569 -10.49866 -10.09700 -9.87253 -9.41812 -9.07450 -8.17963 -6.36174 -0.33772 0.17620 1.17416 1.32534 1.33139 1.45579 1.96557 2.32122 2.35798 2.60298 2.81072 3.06511 3.29326 3.48900 3.76708 3.81948 3.92417 3.93561 4.08007 4.15040 4.16018 4.26138 4.30663 4.42182 4.46097 4.53300 4.57904 4.61283 4.72666 4.79848 4.90060 4.98478 5.00667 5.06616 5.08012 5.19352 5.21141 5.30525 5.38512 5.50768 5.63248 5.72162 5.79384 5.83694 6.01637 6.18587 6.36300 6.43439 6.60269 6.83376 6.91003 7.34520 7.35523 8.85020 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009767 B = 0.004014 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.115141 B = 6974.698065 C = 9476.733537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.177 4.177 3 C 0.147 3.853 4 N -0.713 5.713 5 C 0.548 3.452 6 O -0.539 6.539 7 C -0.180 4.180 8 C -0.031 4.031 9 C -0.166 4.166 10 C 0.126 3.874 11 N -0.542 5.542 12 C 0.325 3.675 13 N -0.483 5.483 14 C 0.089 3.911 15 C 0.073 3.927 16 N -0.538 5.538 17 C 0.202 3.798 18 C -0.556 4.556 19 H 0.048 0.952 20 C 0.016 3.984 21 N -0.924 5.924 22 Si 0.955 3.045 23 H -0.273 1.273 24 H -0.273 1.273 25 H -0.276 1.276 26 C 0.073 3.927 27 C 0.087 3.913 28 H 0.125 0.875 29 H 0.093 0.907 30 H 0.137 0.863 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.414 0.586 34 H 0.179 0.821 35 H 0.189 0.811 36 H 0.188 0.812 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.020 0.980 40 H 0.070 0.930 41 H 0.011 0.989 42 H 0.008 0.992 43 H 0.266 0.734 44 H 0.018 0.982 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.633 -27.492 15.824 32.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.195 4.195 3 C 0.024 3.976 4 N -0.368 5.368 5 C 0.334 3.666 6 O -0.415 6.415 7 C -0.187 4.187 8 C -0.058 4.058 9 C -0.185 4.185 10 C -0.033 4.033 11 N -0.255 5.255 12 C 0.097 3.903 13 N -0.206 5.206 14 C -0.038 4.038 15 C -0.056 4.056 16 N -0.262 5.262 17 C 0.076 3.924 18 C -0.595 4.595 19 H 0.066 0.934 20 C -0.184 4.184 21 N -0.564 5.564 22 Si 0.780 3.220 23 H -0.199 1.199 24 H -0.198 1.198 25 H -0.200 1.200 26 C -0.056 4.056 27 C -0.040 4.040 28 H 0.143 0.857 29 H 0.111 0.889 30 H 0.155 0.845 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.252 0.748 34 H 0.196 0.804 35 H 0.206 0.794 36 H 0.205 0.795 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.038 0.962 40 H 0.088 0.912 41 H 0.029 0.971 42 H 0.026 0.974 43 H 0.075 0.925 44 H 0.036 0.964 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.073 -25.899 15.220 30.648 hybrid contribution -1.118 -0.199 -1.046 1.544 sum -7.191 -26.098 14.173 30.556 Atomic orbital electron populations 1.24180 0.95680 1.03180 0.96781 1.22925 0.96267 0.97092 1.03213 1.20351 0.91394 0.96809 0.89072 1.45714 1.40514 1.19473 1.31112 1.18252 0.80728 0.82783 0.84797 1.90953 1.67467 1.36143 1.46891 1.20726 1.00250 0.98303 0.99395 1.22159 0.96826 0.95771 0.91000 1.22538 0.95750 1.00497 0.99708 1.23502 0.96317 0.88166 0.95276 1.67960 1.22930 1.30116 1.04453 1.19980 0.90076 0.91060 0.89195 1.60009 1.36533 1.02434 1.21593 1.21943 0.89033 0.98092 0.94683 1.21851 0.99964 0.88771 0.95028 1.62648 1.34584 1.03680 1.25300 1.19395 0.94857 0.89236 0.88955 1.21945 1.17594 1.04741 1.15180 0.93369 1.25745 0.98571 0.94691 0.99382 1.70053 1.40939 1.09519 1.35863 0.85613 0.79570 0.78134 0.78722 1.19872 1.19806 1.20048 1.21848 0.91477 0.97524 0.94744 1.21930 1.00606 0.86652 0.94819 0.85672 0.88866 0.84543 0.92821 0.92446 0.74835 0.80357 0.79397 0.79501 0.93408 0.90867 0.96153 0.91171 0.97111 0.97420 0.92477 0.96360 0.91261 0.91023 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 14.32 67.78 0.97 -0.73 16 2 C -0.18 -2.11 9.63 25.64 0.25 -1.86 16 3 C 0.15 2.93 6.11 85.63 0.52 3.45 16 4 N -0.71 -13.51 5.50 -470.11 -2.59 -16.09 16 5 C 0.55 15.77 7.75 86.66 0.67 16.44 16 6 O -0.54 -22.02 15.09 -4.05 -0.06 -22.08 16 7 C -0.18 -4.44 5.91 -19.88 -0.12 -4.56 16 8 C -0.03 -0.40 9.63 22.71 0.22 -0.18 16 9 C -0.17 -1.63 10.09 22.32 0.23 -1.41 16 10 C 0.13 2.04 11.16 84.72 0.95 2.99 16 11 N -0.54 -14.60 9.60 -192.52 -1.85 -16.44 16 12 C 0.33 10.03 5.34 133.65 0.71 10.75 16 13 N -0.48 -18.37 2.66 -700.67 -1.86 -20.23 16 14 C 0.09 3.45 5.49 86.31 0.47 3.92 16 15 C 0.07 3.35 5.24 86.31 0.45 3.81 16 16 N -0.54 -26.59 4.92 -900.28 -4.43 -31.02 16 17 C 0.20 11.64 5.14 85.56 0.44 12.08 16 18 C -0.56 -33.86 7.67 25.60 0.20 -33.66 16 19 H 0.05 3.03 5.81 -2.91 -0.02 3.02 16 20 C 0.02 0.94 5.46 84.66 0.46 1.40 16 21 N -0.92 -57.68 13.29 21.45 0.28 -57.40 16 22 Si 0.95 47.59 29.54 68.60 2.03 49.62 16 23 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 25 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 26 C 0.07 3.38 5.32 86.31 0.46 3.84 16 27 C 0.09 3.39 5.37 86.31 0.46 3.85 16 28 H 0.13 0.79 8.06 -2.91 -0.02 0.76 16 29 H 0.09 1.13 7.84 -2.91 -0.02 1.11 16 30 H 0.14 1.04 8.06 -2.91 -0.02 1.01 16 31 H 0.05 1.27 7.79 -2.39 -0.02 1.25 16 32 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.41 4.20 6.59 -92.71 -0.61 3.59 16 34 H 0.18 0.68 6.55 -2.91 -0.02 0.66 16 35 H 0.19 0.11 8.06 -2.91 -0.02 0.08 16 36 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 38 H 0.07 2.65 8.13 -2.39 -0.02 2.63 16 39 H 0.02 1.07 6.46 -2.39 -0.02 1.06 16 40 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.01 0.66 8.12 -2.39 -0.02 0.64 16 42 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 44 H 0.02 0.96 6.95 -2.39 -0.02 0.94 16 45 H 0.07 3.13 8.13 -2.38 -0.02 3.11 16 46 H 0.07 2.64 8.13 -2.39 -0.02 2.62 16 47 H 0.05 1.98 7.84 -2.39 -0.02 1.96 16 Total: -1.00 -82.88 382.92 -0.76 -83.64 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.36 Total: 9.87 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: 7.35 Total: 20.13 kcal Atomic # 7 Polarization: -130.74 SS G_CDS: -10.44 Total: -141.18 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.06 Total: -22.08 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -82.88 -0.76 -83.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.292 kcal (2) G-P(sol) polarization free energy of solvation -82.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds