Wall clock time and date at job start Tue Mar 31 2020 17:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.44498 * 2 1 4 4 C 1.52964 * 109.45006 * 240.06560 * 2 1 3 5 5 C 1.50594 * 109.82492 * 287.31338 * 4 2 1 6 6 O 1.21273 * 119.63477 * 142.32700 * 5 4 2 7 7 N 1.34466 * 120.73196 * 322.30420 * 5 4 2 8 8 C 1.38773 * 120.68598 * 6.54341 * 7 5 4 9 9 N 1.33225 * 120.58779 * 194.22602 * 8 7 5 10 10 C 1.31790 * 120.61806 * 179.05101 * 9 8 7 11 11 N 1.31759 * 122.09500 * 359.72183 * 10 9 8 12 12 C 1.33277 * 120.83911 * 0.31861 * 11 10 9 13 13 N 1.38609 * 120.66196 * 179.90057 * 12 11 10 14 14 C 1.46898 * 111.00401 * 88.39810 * 13 12 11 15 15 C 1.50699 * 109.47046 * 301.58881 * 14 13 12 16 16 H 1.08005 * 119.99760 * 354.26105 * 15 14 13 17 17 C 1.37876 * 120.00576 * 174.26693 * 15 14 13 18 18 N 1.31518 * 119.99727 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00594 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46910 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47056 * 119.99575 * 19 17 15 22 22 H 1.48495 * 109.47170 * 240.00122 * 19 17 15 23 23 C 1.46905 * 111.00291 * 324.44331 * 13 12 11 24 24 C 1.54269 * 110.02932 * 304.24886 * 23 13 12 25 25 C 1.54965 * 104.15697 * 217.13765 * 24 23 13 26 26 C 1.54887 * 102.78079 * 37.88770 * 25 24 23 27 27 C 1.53879 * 110.03142 * 187.03267 * 23 13 12 28 28 C 1.38549 * 120.38695 * 13.26372 * 8 7 5 29 29 H 1.09001 * 109.46848 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47240 * 299.93527 * 1 2 3 31 31 H 1.08996 * 109.46949 * 59.94046 * 1 2 3 32 32 H 1.09002 * 109.41487 * 167.20479 * 4 2 1 33 33 H 1.09002 * 109.35006 * 47.38075 * 4 2 1 34 34 H 0.96997 * 119.65648 * 186.26430 * 7 5 4 35 35 H 1.08005 * 118.95684 * 179.74458 * 10 9 8 36 36 H 1.09004 * 109.47183 * 61.57993 * 14 13 12 37 37 H 1.08990 * 109.47852 * 181.58400 * 14 13 12 38 38 H 0.96996 * 120.00264 * 179.97438 * 18 17 15 39 39 H 1.08992 * 110.01675 * 65.64259 * 23 13 12 40 40 H 1.09001 * 110.48782 * 335.78486 * 24 23 13 41 41 H 1.08996 * 110.48476 * 98.42560 * 24 23 13 42 42 H 1.09005 * 110.71838 * 279.57235 * 25 24 23 43 43 H 1.09000 * 110.92239 * 156.29754 * 25 24 23 44 44 H 1.08998 * 110.49037 * 203.40564 * 26 25 24 45 45 H 1.09003 * 110.48307 * 80.75835 * 26 25 24 46 46 H 1.08998 * 110.03371 * 238.56534 * 27 23 13 47 47 H 1.09002 * 110.02923 * 359.97438 * 27 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0394 -0.7197 -1.2499 5 6 1.8119 -2.2022 -1.1140 6 8 1.4821 -2.8498 -2.0849 7 7 1.9708 -2.8159 0.0718 8 6 2.2153 -2.0803 1.2228 9 7 2.6485 -2.6794 2.3311 10 6 2.8987 -1.9788 3.4189 11 7 2.7403 -0.6715 3.4615 12 6 2.3094 -0.0003 2.3937 13 7 2.1422 1.3748 2.4432 14 6 3.3856 2.0697 2.0843 15 6 4.4850 1.6507 3.0260 16 1 4.2608 1.0122 3.8678 17 6 5.7770 2.0824 2.8131 18 7 6.0501 2.8596 1.7879 19 14 7.1397 1.5636 3.9808 20 1 6.5756 0.6948 5.0449 21 1 8.1773 0.8135 3.2285 22 1 7.7493 2.7693 4.5969 23 6 1.6645 1.7998 3.7658 24 6 0.3634 1.0519 4.1231 25 6 -0.4887 2.1092 4.8698 26 6 -0.1801 3.4111 4.0895 27 6 1.3193 3.2992 3.7448 28 6 2.0308 -0.7071 1.2294 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5128 0.8906 31 1 -0.3633 0.5147 -0.8894 32 1 3.1053 -0.5263 -1.3703 33 1 1.5030 -0.3495 -2.1237 34 1 1.9099 -3.7826 0.1239 35 1 3.2449 -2.4925 4.3037 36 1 3.6644 1.8114 1.0627 37 1 3.2345 3.1465 2.1585 38 1 6.9589 3.1636 1.6383 39 1 2.4273 1.6028 4.5190 40 1 -0.1469 0.7205 3.2187 41 1 0.5771 0.2042 4.7740 42 1 -0.1707 2.1969 5.9088 43 1 -1.5496 1.8660 4.8113 44 1 -0.3634 4.2840 4.7161 45 1 -0.7781 3.4612 3.1795 46 1 1.9140 3.8297 4.4884 47 1 1.5067 3.7116 2.7533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166534078.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:06 Heat of formation + Delta-G solvation = 13.593704 kcal Electronic energy + Delta-G solvation = -30351.948168 eV Core-core repulsion = 26534.258615 eV Total energy + Delta-G solvation = -3817.689553 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.57553 -39.76437 -38.37057 -36.18949 -35.74383 -34.19344 -32.61848 -31.51090 -29.98675 -28.48356 -27.84462 -27.49904 -26.08125 -24.42141 -23.50907 -22.37118 -21.75407 -20.33477 -19.73596 -18.78201 -18.38581 -17.33627 -16.54012 -16.40896 -15.83365 -15.52780 -15.18481 -15.10286 -14.75630 -14.50990 -14.28952 -13.82956 -13.55795 -13.48251 -13.14760 -12.95886 -12.78610 -12.50505 -12.16261 -11.72163 -11.44675 -11.33015 -11.28535 -11.13042 -10.96935 -10.89038 -10.71243 -10.61890 -10.50107 -10.44598 -10.36789 -10.16904 -10.06306 -9.98494 -9.74302 -9.33051 -8.82022 -8.53676 -8.44428 -7.72831 -6.15732 -4.21469 1.21859 1.45183 2.56817 2.80238 3.21431 3.30627 3.35754 4.14788 4.19991 4.29008 4.34492 4.62812 4.76748 4.90532 4.95412 5.03105 5.05626 5.13968 5.18913 5.22348 5.36501 5.62211 5.68517 5.78531 5.81699 5.85839 5.88797 5.93796 6.03044 6.05097 6.13670 6.18355 6.19378 6.29705 6.31632 6.41531 6.49521 6.55784 6.63545 6.68727 6.78476 6.90854 7.03329 7.29428 7.44463 7.65228 7.83642 7.89448 7.99129 8.10919 8.58543 8.91175 9.46288 10.91470 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009171 B = 0.006050 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3052.480258 B = 4626.762662 C = 6055.670053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.029 4.029 3 H 0.114 0.886 4 C -0.140 4.140 5 C 0.535 3.465 6 O -0.527 6.527 7 N -0.645 5.645 8 C 0.402 3.598 9 N -0.570 5.570 10 C 0.331 3.669 11 N -0.540 5.540 12 C 0.428 3.572 13 N -0.487 5.487 14 C 0.191 3.809 15 C -0.552 4.552 16 H 0.081 0.919 17 C 0.067 3.933 18 N -0.892 5.892 19 Si 0.888 3.112 20 H -0.270 1.270 21 H -0.286 1.286 22 H -0.283 1.283 23 C 0.095 3.905 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.120 4.120 27 C -0.113 4.113 28 C -0.214 4.214 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.413 0.587 35 H 0.191 0.809 36 H 0.038 0.962 37 H 0.047 0.953 38 H 0.262 0.738 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.425 -3.449 0.804 11.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.049 4.049 3 H 0.132 0.868 4 C -0.179 4.179 5 C 0.324 3.676 6 O -0.401 6.401 7 N -0.292 5.292 8 C 0.164 3.836 9 N -0.293 5.293 10 C 0.040 3.960 11 N -0.259 5.259 12 C 0.192 3.808 13 N -0.208 5.208 14 C 0.069 3.931 15 C -0.591 4.591 16 H 0.099 0.901 17 C -0.136 4.136 18 N -0.530 5.530 19 Si 0.716 3.284 20 H -0.195 1.195 21 H -0.212 1.212 22 H -0.209 1.209 23 C -0.013 4.013 24 C -0.156 4.156 25 C -0.159 4.159 26 C -0.158 4.158 27 C -0.151 4.151 28 C -0.224 4.224 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.251 0.749 35 H 0.208 0.792 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.490 -3.788 0.500 12.109 hybrid contribution 1.496 -0.605 0.595 1.720 sum -9.994 -4.392 1.095 10.972 Atomic orbital electron populations 1.21806 0.93912 1.01169 1.02652 1.19717 0.96010 1.00808 0.88367 0.86847 1.21950 1.05158 0.89756 1.01077 1.20864 0.74463 0.91212 0.81050 1.90755 1.45115 1.67616 1.36628 1.43247 1.69051 1.11173 1.05762 1.17950 0.91187 0.87799 0.86658 1.67976 1.19544 1.41589 1.00169 1.24474 0.90700 0.86910 0.93943 1.68828 1.15291 1.09413 1.32411 1.19655 0.83010 0.91583 0.86590 1.60562 1.32583 0.99346 1.28316 1.19951 0.81830 0.94292 0.97076 1.22010 0.92955 1.31433 1.12721 0.90115 1.24919 0.98680 0.94775 0.95216 1.69939 1.20338 1.34394 1.28361 0.86582 0.82030 0.78510 0.81267 1.19491 1.21196 1.20944 1.22110 0.95472 0.93751 0.89970 1.22487 0.95834 0.97697 0.99629 1.22437 0.98858 0.95542 0.99067 1.22327 0.96972 0.97012 0.99470 1.22150 0.94794 0.95678 1.02471 1.20260 1.10697 0.92300 0.99111 0.93795 0.91420 0.91965 0.87459 0.87079 0.74860 0.79240 0.94363 0.93463 0.92845 0.90800 0.91892 0.92139 0.91841 0.92314 0.92374 0.91928 0.91846 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.02 37.16 0.34 -1.36 16 2 C -0.03 -0.41 2.75 -91.93 -0.25 -0.67 16 3 H 0.11 1.74 6.64 -51.93 -0.34 1.39 16 4 C -0.14 -1.84 5.54 -27.95 -0.15 -1.99 16 5 C 0.54 7.87 7.09 -11.18 -0.08 7.79 16 6 O -0.53 -8.92 17.91 5.56 0.10 -8.82 16 7 N -0.65 -9.24 5.36 -11.62 -0.06 -9.30 16 8 C 0.40 6.47 7.58 -154.75 -1.17 5.29 16 9 N -0.57 -9.31 10.49 -13.97 -0.15 -9.46 16 10 C 0.33 5.41 12.27 -92.19 -1.13 4.28 16 11 N -0.54 -10.00 7.31 -13.88 -0.10 -10.10 16 12 C 0.43 7.85 3.99 -154.69 -0.62 7.23 16 13 N -0.49 -8.96 3.61 -165.64 -0.60 -9.56 16 14 C 0.19 4.28 4.60 -4.98 -0.02 4.26 16 15 C -0.55 -13.91 7.68 -34.44 -0.26 -14.18 16 16 H 0.08 2.07 5.34 -52.48 -0.28 1.79 16 17 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -24.59 13.29 55.43 0.74 -23.85 16 19 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.09 1.63 1.99 -66.59 -0.13 1.49 16 24 C -0.12 -1.74 5.33 -25.03 -0.13 -1.87 16 25 C -0.12 -1.49 6.91 -24.70 -0.17 -1.67 16 26 C -0.12 -1.51 6.83 -25.07 -0.17 -1.68 16 27 C -0.11 -1.76 5.88 -25.61 -0.15 -1.91 16 28 C -0.21 -3.55 4.93 -104.36 -0.51 -4.06 16 29 H 0.04 0.55 7.67 -51.93 -0.40 0.15 16 30 H 0.07 0.86 7.94 -51.93 -0.41 0.45 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.11 1.24 8.08 -51.93 -0.42 0.82 16 34 H 0.41 5.30 8.90 -40.82 -0.36 4.94 16 35 H 0.19 2.46 8.06 -52.48 -0.42 2.04 16 36 H 0.04 0.93 7.53 -51.93 -0.39 0.54 16 37 H 0.05 1.11 6.38 -51.93 -0.33 0.78 16 38 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.07 1.49 6.42 -51.93 -0.33 1.15 16 40 H 0.06 0.94 7.65 -51.93 -0.40 0.55 16 41 H 0.06 0.92 7.97 -51.93 -0.41 0.50 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.08 1.25 6.63 -51.93 -0.34 0.91 16 LS Contribution 367.21 15.07 5.53 5.53 Total: -1.00 -28.79 367.21 -11.24 -40.03 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -6.95 Total: 7.00 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -4.73 Total: 2.63 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -0.17 Total: -62.27 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.10 Total: -8.82 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.79 -11.24 -40.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534078.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.626 kcal (2) G-P(sol) polarization free energy of solvation -28.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds