Wall clock time and date at job start Tue Mar 31 2020 17:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.44498 * 2 1 4 4 C 1.52964 * 109.45006 * 240.06560 * 2 1 3 5 5 C 1.50594 * 109.82492 * 287.31338 * 4 2 1 6 6 O 1.21273 * 119.63477 * 142.32700 * 5 4 2 7 7 N 1.34466 * 120.73196 * 322.30420 * 5 4 2 8 8 C 1.38773 * 120.68598 * 6.54341 * 7 5 4 9 9 N 1.33225 * 120.58779 * 194.22602 * 8 7 5 10 10 C 1.31790 * 120.61806 * 179.05101 * 9 8 7 11 11 N 1.31759 * 122.09500 * 359.72183 * 10 9 8 12 12 C 1.33277 * 120.83911 * 0.31861 * 11 10 9 13 13 N 1.38609 * 120.66196 * 179.90057 * 12 11 10 14 14 C 1.46898 * 111.00401 * 88.39810 * 13 12 11 15 15 C 1.50699 * 109.47046 * 301.58881 * 14 13 12 16 16 H 1.08005 * 119.99760 * 354.26105 * 15 14 13 17 17 C 1.37876 * 120.00576 * 174.26693 * 15 14 13 18 18 N 1.31518 * 119.99727 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00594 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46910 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47056 * 119.99575 * 19 17 15 22 22 H 1.48495 * 109.47170 * 240.00122 * 19 17 15 23 23 C 1.46905 * 111.00291 * 324.44331 * 13 12 11 24 24 C 1.54269 * 110.02932 * 304.24886 * 23 13 12 25 25 C 1.54965 * 104.15697 * 217.13765 * 24 23 13 26 26 C 1.54887 * 102.78079 * 37.88770 * 25 24 23 27 27 C 1.53879 * 110.03142 * 187.03267 * 23 13 12 28 28 C 1.38549 * 120.38695 * 13.26372 * 8 7 5 29 29 H 1.09001 * 109.46848 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47240 * 299.93527 * 1 2 3 31 31 H 1.08996 * 109.46949 * 59.94046 * 1 2 3 32 32 H 1.09002 * 109.41487 * 167.20479 * 4 2 1 33 33 H 1.09002 * 109.35006 * 47.38075 * 4 2 1 34 34 H 0.96997 * 119.65648 * 186.26430 * 7 5 4 35 35 H 1.08005 * 118.95684 * 179.74458 * 10 9 8 36 36 H 1.09004 * 109.47183 * 61.57993 * 14 13 12 37 37 H 1.08990 * 109.47852 * 181.58400 * 14 13 12 38 38 H 0.96996 * 120.00264 * 179.97438 * 18 17 15 39 39 H 1.08992 * 110.01675 * 65.64259 * 23 13 12 40 40 H 1.09001 * 110.48782 * 335.78486 * 24 23 13 41 41 H 1.08996 * 110.48476 * 98.42560 * 24 23 13 42 42 H 1.09005 * 110.71838 * 279.57235 * 25 24 23 43 43 H 1.09000 * 110.92239 * 156.29754 * 25 24 23 44 44 H 1.08998 * 110.49037 * 203.40564 * 26 25 24 45 45 H 1.09003 * 110.48307 * 80.75835 * 26 25 24 46 46 H 1.08998 * 110.03371 * 238.56534 * 27 23 13 47 47 H 1.09002 * 110.02923 * 359.97438 * 27 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0394 -0.7197 -1.2499 5 6 1.8119 -2.2022 -1.1140 6 8 1.4821 -2.8498 -2.0849 7 7 1.9708 -2.8159 0.0718 8 6 2.2153 -2.0803 1.2228 9 7 2.6485 -2.6794 2.3311 10 6 2.8987 -1.9788 3.4189 11 7 2.7403 -0.6715 3.4615 12 6 2.3094 -0.0003 2.3937 13 7 2.1422 1.3748 2.4432 14 6 3.3856 2.0697 2.0843 15 6 4.4850 1.6507 3.0260 16 1 4.2608 1.0122 3.8678 17 6 5.7770 2.0824 2.8131 18 7 6.0501 2.8596 1.7879 19 14 7.1397 1.5636 3.9808 20 1 6.5756 0.6948 5.0449 21 1 8.1773 0.8135 3.2285 22 1 7.7493 2.7693 4.5969 23 6 1.6645 1.7998 3.7658 24 6 0.3634 1.0519 4.1231 25 6 -0.4887 2.1092 4.8698 26 6 -0.1801 3.4111 4.0895 27 6 1.3193 3.2992 3.7448 28 6 2.0308 -0.7071 1.2294 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5128 0.8906 31 1 -0.3633 0.5147 -0.8894 32 1 3.1053 -0.5263 -1.3703 33 1 1.5030 -0.3495 -2.1237 34 1 1.9099 -3.7826 0.1239 35 1 3.2449 -2.4925 4.3037 36 1 3.6644 1.8114 1.0627 37 1 3.2345 3.1465 2.1585 38 1 6.9589 3.1636 1.6383 39 1 2.4273 1.6028 4.5190 40 1 -0.1469 0.7205 3.2187 41 1 0.5771 0.2042 4.7740 42 1 -0.1707 2.1969 5.9088 43 1 -1.5496 1.8660 4.8113 44 1 -0.3634 4.2840 4.7161 45 1 -0.7781 3.4612 3.1795 46 1 1.9140 3.8297 4.4884 47 1 1.5067 3.7116 2.7533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166534078.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:05 Heat of formation + Delta-G solvation = -1.273581 kcal Electronic energy + Delta-G solvation = -30352.592862 eV Core-core repulsion = 26534.258615 eV Total energy + Delta-G solvation = -3818.334247 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.86770 -41.05636 -39.69425 -37.43613 -37.01617 -35.56134 -34.42236 -32.91514 -31.30013 -29.76132 -28.99388 -28.90369 -27.60271 -25.69077 -25.09793 -23.70204 -23.14252 -21.47310 -20.95996 -20.13411 -19.69271 -18.76278 -18.15190 -17.75753 -17.12864 -16.98763 -16.62935 -16.37695 -16.13094 -15.85430 -15.63893 -15.13925 -14.88179 -14.80617 -14.34548 -14.31677 -14.10289 -13.84879 -13.40894 -13.30671 -13.08116 -12.79351 -12.65891 -12.42732 -12.38121 -12.21574 -12.18879 -11.89330 -11.81657 -11.74497 -11.68047 -11.54118 -11.53408 -11.32209 -11.15375 -10.72650 -10.58942 -10.19965 -9.77119 -9.29269 -8.17504 -6.28273 -0.07753 0.07368 1.32160 1.34412 1.36846 1.46821 1.58741 2.37860 2.77112 2.89692 3.05881 3.13535 3.37590 3.61675 3.65301 3.79008 3.83561 3.90513 3.95151 4.12639 4.23030 4.47878 4.62351 4.63957 4.68418 4.69748 4.72174 4.77541 4.89895 4.92509 5.00276 5.04511 5.10935 5.13796 5.15664 5.24627 5.31266 5.33074 5.38698 5.39706 5.42793 5.50790 5.57937 5.63261 5.78798 5.97218 6.08326 6.31373 6.50269 6.71116 6.91520 7.24161 7.41569 8.87923 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009171 B = 0.006050 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3052.480258 B = 4626.762662 C = 6055.670053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.027 4.027 3 H 0.101 0.899 4 C -0.136 4.136 5 C 0.540 3.460 6 O -0.546 6.546 7 N -0.638 5.638 8 C 0.400 3.600 9 N -0.569 5.569 10 C 0.324 3.676 11 N -0.562 5.562 12 C 0.406 3.594 13 N -0.474 5.474 14 C 0.208 3.792 15 C -0.548 4.548 16 H 0.075 0.925 17 C 0.019 3.981 18 N -0.922 5.922 19 Si 0.940 3.060 20 H -0.269 1.269 21 H -0.288 1.288 22 H -0.279 1.279 23 C 0.093 3.907 24 C -0.108 4.108 25 C -0.113 4.113 26 C -0.111 4.111 27 C -0.114 4.114 28 C -0.217 4.217 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.136 0.864 34 H 0.420 0.580 35 H 0.221 0.779 36 H 0.016 0.984 37 H 0.033 0.967 38 H 0.262 0.738 39 H 0.039 0.961 40 H 0.061 0.939 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.053 0.947 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.917 -3.997 1.102 13.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.047 4.047 3 H 0.119 0.881 4 C -0.175 4.175 5 C 0.330 3.670 6 O -0.422 6.422 7 N -0.285 5.285 8 C 0.161 3.839 9 N -0.291 5.291 10 C 0.034 3.966 11 N -0.282 5.282 12 C 0.170 3.830 13 N -0.195 5.195 14 C 0.084 3.916 15 C -0.587 4.587 16 H 0.093 0.907 17 C -0.180 4.180 18 N -0.562 5.562 19 Si 0.767 3.233 20 H -0.193 1.193 21 H -0.214 1.214 22 H -0.205 1.205 23 C -0.014 4.014 24 C -0.146 4.146 25 C -0.151 4.151 26 C -0.148 4.148 27 C -0.152 4.152 28 C -0.227 4.227 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.154 0.846 34 H 0.260 0.740 35 H 0.237 0.763 36 H 0.034 0.966 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.072 0.928 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.998 -4.358 0.816 13.733 hybrid contribution 1.953 -0.507 0.511 2.082 sum -11.045 -4.865 1.327 12.141 Atomic orbital electron populations 1.21745 0.92133 1.01269 1.03528 1.19730 0.97380 0.99815 0.87787 0.88136 1.21989 1.05402 0.88627 1.01498 1.21057 0.73716 0.91609 0.80641 1.90754 1.46130 1.68155 1.37169 1.43192 1.68529 1.11542 1.05219 1.18065 0.90887 0.87862 0.87049 1.68053 1.19301 1.41485 1.00248 1.25077 0.90194 0.86431 0.94898 1.68785 1.15978 1.10527 1.32874 1.19780 0.84311 0.91448 0.87426 1.60472 1.30343 0.99600 1.29108 1.19530 0.83003 0.93755 0.95278 1.22250 0.93640 1.30329 1.12506 0.90722 1.25576 1.00726 0.95196 0.96523 1.70029 1.20633 1.35755 1.29800 0.85763 0.79705 0.78163 0.79645 1.19298 1.21409 1.20508 1.22141 0.95770 0.95268 0.88249 1.22370 0.94701 0.97867 0.99669 1.22427 0.99683 0.94190 0.98814 1.22282 0.94272 0.97963 1.00294 1.22133 0.97307 0.94307 1.01414 1.20510 1.10091 0.92695 0.99403 0.93964 0.91966 0.89706 0.87679 0.84583 0.73990 0.76325 0.96550 0.94888 0.92928 0.94248 0.92009 0.92904 0.91390 0.89983 0.90545 0.90997 0.92841 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.02 71.98 0.65 -2.30 16 2 C -0.03 -0.75 2.75 -11.64 -0.03 -0.78 16 3 H 0.10 3.07 6.64 -2.39 -0.02 3.06 16 4 C -0.14 -3.38 5.54 29.80 0.17 -3.21 16 5 C 0.54 15.07 7.09 87.67 0.62 15.69 16 6 O -0.55 -17.62 17.91 -3.01 -0.05 -17.68 16 7 N -0.64 -17.42 5.36 -309.24 -1.66 -19.07 16 8 C 0.40 12.49 7.58 132.75 1.01 13.50 16 9 N -0.57 -17.94 10.49 -198.12 -2.08 -20.02 16 10 C 0.32 10.34 12.27 180.90 2.22 12.55 16 11 N -0.56 -20.81 7.31 -197.83 -1.45 -22.25 16 12 C 0.41 14.96 3.99 132.91 0.53 15.49 16 13 N -0.47 -17.78 3.61 -677.96 -2.45 -20.22 16 14 C 0.21 9.66 4.60 85.56 0.39 10.05 16 15 C -0.55 -28.23 7.68 25.60 0.20 -28.03 16 16 H 0.07 3.91 5.34 -2.91 -0.02 3.89 16 17 C 0.02 1.03 5.46 84.65 0.46 1.50 16 18 N -0.92 -51.86 13.29 21.45 0.28 -51.57 16 19 Si 0.94 43.36 29.54 68.60 2.03 45.39 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 21 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 C 0.09 3.24 1.99 45.64 0.09 3.34 16 24 C -0.11 -3.07 5.33 31.70 0.17 -2.90 16 25 C -0.11 -2.53 6.91 31.91 0.22 -2.31 16 26 C -0.11 -2.55 6.83 31.67 0.22 -2.33 16 27 C -0.11 -3.54 5.88 31.32 0.18 -3.36 16 28 C -0.22 -7.12 4.93 -19.69 -0.10 -7.21 16 29 H 0.04 0.97 7.67 -2.39 -0.02 0.95 16 30 H 0.06 1.49 7.94 -2.39 -0.02 1.47 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.14 2.71 8.08 -2.39 -0.02 2.69 16 34 H 0.42 10.19 8.90 -92.71 -0.83 9.37 16 35 H 0.22 5.36 8.06 -2.91 -0.02 5.34 16 36 H 0.02 0.83 7.53 -2.38 -0.02 0.81 16 37 H 0.03 1.62 6.38 -2.39 -0.02 1.61 16 38 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 39 H 0.04 1.64 6.42 -2.39 -0.02 1.62 16 40 H 0.06 1.77 7.65 -2.39 -0.02 1.75 16 41 H 0.05 1.57 7.97 -2.39 -0.02 1.55 16 42 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 43 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.06 2.09 6.63 -2.39 -0.02 2.08 16 Total: -1.00 -62.08 367.21 1.80 -60.28 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.18 Total: 25.47 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: 7.00 Total: 19.68 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -7.34 Total: -133.14 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.05 Total: -17.68 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -62.08 1.80 -60.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534078.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.005 kcal (2) G-P(sol) polarization free energy of solvation -62.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds