Wall clock time and date at job start Tue Mar 31 2020 17:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.45355 * 2 1 4 4 C 1.52992 * 109.44986 * 119.95270 * 2 1 3 5 5 C 1.50598 * 109.75576 * 167.62269 * 4 2 1 6 6 O 1.21273 * 119.63621 * 142.55676 * 5 4 2 7 7 N 1.34465 * 120.72600 * 322.53666 * 5 4 2 8 8 C 1.38779 * 120.73141 * 5.47961 * 7 5 4 9 9 N 1.33032 * 120.85929 * 193.46485 * 8 7 5 10 10 C 1.31801 * 120.69045 * 179.56279 * 9 8 7 11 11 N 1.31762 * 122.07214 * 0.45569 * 10 9 8 12 12 C 1.33265 * 120.83560 * 0.55914 * 11 10 9 13 13 N 1.38602 * 120.66356 * 179.69827 * 12 11 10 14 14 C 1.46909 * 110.99774 * 62.30204 * 13 12 11 15 15 C 1.50694 * 109.46947 * 294.05874 * 14 13 12 16 16 H 1.07997 * 120.00324 * 357.84522 * 15 14 13 17 17 C 1.37886 * 119.99559 * 177.85190 * 15 14 13 18 18 N 1.31506 * 120.00209 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99738 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47071 * 89.99982 * 19 17 15 21 21 H 1.48497 * 109.47158 * 210.00028 * 19 17 15 22 22 H 1.48505 * 109.47596 * 330.00199 * 19 17 15 23 23 C 1.46900 * 111.00381 * 298.35459 * 13 12 11 24 24 C 1.54273 * 110.02991 * 305.95487 * 23 13 12 25 25 C 1.54882 * 104.19511 * 217.10352 * 24 23 13 26 26 C 1.54893 * 102.74951 * 37.94352 * 25 24 23 27 27 C 1.53872 * 110.03550 * 188.79017 * 23 13 12 28 28 C 1.38745 * 120.14653 * 14.65650 * 8 7 5 29 29 H 1.08998 * 109.47554 * 287.53252 * 1 2 3 30 30 H 1.09001 * 109.46763 * 47.53821 * 1 2 3 31 31 H 1.09007 * 109.46764 * 167.53002 * 1 2 3 32 32 H 1.09004 * 109.41707 * 287.70488 * 4 2 1 33 33 H 1.08993 * 109.42519 * 47.53229 * 4 2 1 34 34 H 0.96997 * 119.63487 * 185.46827 * 7 5 4 35 35 H 1.08003 * 118.96053 * 180.48085 * 10 9 8 36 36 H 1.09000 * 109.46638 * 54.05996 * 14 13 12 37 37 H 1.09000 * 109.46950 * 174.05036 * 14 13 12 38 38 H 0.97004 * 120.00325 * 179.97438 * 18 17 15 39 39 H 1.08997 * 110.01773 * 67.39260 * 23 13 12 40 40 H 1.09006 * 110.48479 * 335.78614 * 24 23 13 41 41 H 1.09004 * 110.48425 * 98.42268 * 24 23 13 42 42 H 1.08996 * 110.75649 * 279.62735 * 25 24 23 43 43 H 1.09005 * 110.91248 * 156.32970 * 25 24 23 44 44 H 1.09002 * 110.48061 * 203.37705 * 26 25 24 45 45 H 1.08995 * 110.59641 * 80.79027 * 26 25 24 46 46 H 1.08997 * 110.03077 * 238.56616 * 27 23 13 47 47 H 1.08998 * 110.03030 * 359.94734 * 27 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0395 -0.7203 1.2499 5 6 3.5144 -0.9930 1.1147 6 8 4.2329 -0.9006 2.0873 7 7 4.0432 -1.3382 -0.0724 8 6 3.2650 -1.3414 -1.2215 9 7 3.6956 -1.9270 -2.3356 10 6 2.9501 -1.9355 -3.4225 11 7 1.7630 -1.3651 -3.4611 12 6 1.2701 -0.7407 -2.3920 13 7 0.0235 -0.1365 -2.4385 14 6 -1.0316 -1.1257 -2.6962 15 6 -0.8564 -1.6983 -4.0791 16 1 -0.0638 -1.3362 -4.7170 17 6 -1.7083 -2.6844 -4.5299 18 7 -2.6732 -3.1255 -3.7529 19 14 -1.4916 -3.3937 -6.2443 20 1 -0.5737 -4.5596 -6.1852 21 1 -2.8104 -3.8281 -6.7706 22 1 -0.9182 -2.3573 -7.1401 23 6 -0.0045 0.9363 -3.4416 24 6 1.1423 1.9345 -3.1799 25 6 0.5304 3.3149 -3.5245 26 6 -0.9201 3.1874 -2.9963 27 6 -1.3157 1.7330 -3.3249 28 6 2.0305 -0.7081 -1.2287 29 1 -0.3634 0.3096 0.9799 30 1 -0.3633 0.6938 -0.7582 31 1 -0.3633 -1.0035 -0.2219 32 1 1.8653 -0.0943 2.1252 33 1 1.5058 -1.6633 1.3677 34 1 4.9790 -1.5876 -0.1263 35 1 3.3240 -2.4258 -4.3092 36 1 -0.9660 -1.9269 -1.9601 37 1 -2.0068 -0.6441 -2.6230 38 1 -3.2727 -3.8190 -4.0702 39 1 0.0882 0.5141 -4.4422 40 1 1.4450 1.9019 -2.1332 41 1 1.9905 1.7200 -3.8301 42 1 0.5361 3.4819 -4.6016 43 1 1.0605 4.1154 -3.0082 44 1 -1.5769 3.8874 -3.5127 45 1 -0.9527 3.3578 -1.9203 46 1 -1.8591 1.6981 -4.2691 47 1 -1.9317 1.3230 -2.5246 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166534079.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:09 Heat of formation + Delta-G solvation = 33.867513 kcal Electronic energy + Delta-G solvation = -30530.539094 eV Core-core repulsion = 26713.728679 eV Total energy + Delta-G solvation = -3816.810415 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.65637 -39.81038 -38.50226 -36.22074 -35.86788 -34.17258 -32.49773 -31.58461 -30.05976 -28.46920 -27.82341 -27.43134 -26.11443 -24.33739 -23.44660 -22.33183 -21.25637 -20.40931 -19.99846 -18.98127 -18.43965 -17.36551 -16.74419 -16.40002 -15.91004 -15.72894 -15.11423 -14.92959 -14.74361 -14.57392 -14.26444 -13.99323 -13.60461 -13.49548 -13.08855 -12.97339 -12.51055 -12.20707 -11.86865 -11.74838 -11.60798 -11.26286 -11.22454 -11.07782 -10.89030 -10.87068 -10.75477 -10.64355 -10.48603 -10.43058 -10.37089 -10.19391 -10.02476 -9.92863 -9.60768 -9.32615 -8.64126 -8.49132 -8.39598 -7.59444 -6.05061 -4.07257 1.14973 1.34364 2.49306 2.72440 3.28753 3.36029 3.39393 4.10555 4.15104 4.22830 4.42636 4.58855 4.72946 4.87526 4.90381 4.96010 5.00947 5.10457 5.21005 5.30319 5.33747 5.64017 5.72304 5.78883 5.85380 5.88239 5.92344 5.94143 5.98816 6.08361 6.14732 6.17664 6.25787 6.36639 6.41474 6.48624 6.54985 6.61252 6.68388 6.76223 6.83981 7.03965 7.09838 7.36155 7.49060 7.62247 7.82022 7.94985 8.02709 8.21094 8.55870 9.03708 9.57592 11.02813 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010787 B = 0.005521 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.112026 B = 5069.986607 C = 6221.513479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.023 4.023 3 H 0.082 0.918 4 C -0.138 4.138 5 C 0.532 3.468 6 O -0.526 6.526 7 N -0.646 5.646 8 C 0.394 3.606 9 N -0.564 5.564 10 C 0.323 3.677 11 N -0.514 5.514 12 C 0.410 3.590 13 N -0.483 5.483 14 C 0.188 3.812 15 C -0.531 4.531 16 H 0.084 0.916 17 C 0.061 3.939 18 N -0.898 5.898 19 Si 0.891 3.109 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.274 1.274 23 C 0.090 3.910 24 C -0.125 4.125 25 C -0.120 4.120 26 C -0.121 4.121 27 C -0.109 4.109 28 C -0.209 4.209 29 H 0.037 0.963 30 H 0.107 0.893 31 H 0.059 0.941 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.413 0.587 35 H 0.192 0.808 36 H 0.031 0.969 37 H 0.047 0.953 38 H 0.260 0.740 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.853 9.390 4.511 12.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.043 4.043 3 H 0.100 0.900 4 C -0.178 4.178 5 C 0.321 3.679 6 O -0.400 6.400 7 N -0.293 5.293 8 C 0.156 3.844 9 N -0.286 5.286 10 C 0.032 3.968 11 N -0.232 5.232 12 C 0.174 3.826 13 N -0.206 5.206 14 C 0.065 3.935 15 C -0.571 4.571 16 H 0.102 0.898 17 C -0.140 4.140 18 N -0.538 5.538 19 Si 0.719 3.281 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.199 1.199 23 C -0.017 4.017 24 C -0.163 4.163 25 C -0.158 4.158 26 C -0.159 4.159 27 C -0.147 4.147 28 C -0.219 4.219 29 H 0.056 0.944 30 H 0.126 0.874 31 H 0.078 0.922 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.252 0.748 35 H 0.209 0.791 36 H 0.049 0.951 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.122 9.142 4.807 12.546 hybrid contribution 0.428 -1.090 -1.181 1.663 sum 7.549 8.052 3.626 11.618 Atomic orbital electron populations 1.22275 0.91133 1.05114 1.01353 1.19670 0.98896 0.97625 0.88115 0.89997 1.21983 0.90307 1.04333 1.01189 1.20925 0.91680 0.74224 0.81077 1.90763 1.62666 1.50116 1.36485 1.43273 1.14171 1.65995 1.05845 1.18007 0.88333 0.91342 0.86757 1.67887 1.38454 1.22272 0.99958 1.24668 0.85923 0.92196 0.93970 1.69189 1.12276 1.10132 1.31614 1.19884 0.90476 0.85810 0.86433 1.61458 1.00276 1.12659 1.46220 1.19950 0.88175 0.88678 0.96661 1.21967 1.14467 1.20321 1.00306 0.89774 1.24930 0.95187 0.96625 0.97273 1.69937 1.17984 1.29455 1.36426 0.86613 0.77075 0.79411 0.84969 1.20971 1.21617 1.19862 1.22242 0.94191 0.89908 0.95359 1.22551 0.97603 0.94883 1.01275 1.22405 0.96265 0.96598 1.00528 1.22340 0.95848 0.97106 1.00564 1.22099 0.96937 0.93379 1.02321 1.20636 0.95702 1.06449 0.99071 0.94414 0.87421 0.92169 0.87143 0.87616 0.74815 0.79118 0.95070 0.93485 0.93036 0.90853 0.91297 0.92832 0.91868 0.92218 0.92332 0.91812 0.91715 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 7.55 37.16 0.28 -1.64 16 2 C -0.02 -0.30 2.84 -91.93 -0.26 -0.56 16 3 H 0.08 0.99 7.95 -51.93 -0.41 0.58 16 4 C -0.14 -1.65 5.39 -27.94 -0.15 -1.80 16 5 C 0.53 7.34 7.71 -11.17 -0.09 7.26 16 6 O -0.53 -8.52 17.91 5.56 0.10 -8.42 16 7 N -0.65 -8.74 5.36 -11.61 -0.06 -8.81 16 8 C 0.39 6.07 7.59 -154.84 -1.17 4.89 16 9 N -0.56 -9.00 10.48 -13.96 -0.15 -9.15 16 10 C 0.32 5.33 12.27 -92.18 -1.13 4.20 16 11 N -0.51 -9.75 7.51 -13.89 -0.10 -9.85 16 12 C 0.41 7.31 3.86 -154.71 -0.60 6.71 16 13 N -0.48 -8.54 0.55 -165.64 -0.09 -8.63 16 14 C 0.19 4.20 4.02 -4.97 -0.02 4.18 16 15 C -0.53 -13.22 7.16 -34.44 -0.25 -13.47 16 16 H 0.08 2.11 5.02 -52.49 -0.26 1.85 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -25.07 13.29 55.43 0.74 -24.33 16 19 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 C 0.09 1.50 2.19 -66.59 -0.15 1.35 16 24 C -0.13 -1.76 5.53 -25.07 -0.14 -1.90 16 25 C -0.12 -1.43 6.91 -24.74 -0.17 -1.60 16 26 C -0.12 -1.45 6.83 -25.07 -0.17 -1.62 16 27 C -0.11 -1.65 5.99 -25.62 -0.15 -1.80 16 28 C -0.21 -3.28 5.24 -104.30 -0.55 -3.83 16 29 H 0.04 0.43 8.09 -51.93 -0.42 0.01 16 30 H 0.11 1.57 5.91 -51.93 -0.31 1.26 16 31 H 0.06 0.97 6.33 -51.92 -0.33 0.64 16 32 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.11 1.24 8.08 -51.93 -0.42 0.82 16 34 H 0.41 5.04 8.90 -40.82 -0.36 4.68 16 35 H 0.19 2.58 8.06 -52.48 -0.42 2.16 16 36 H 0.03 0.78 7.23 -51.93 -0.38 0.41 16 37 H 0.05 1.11 6.68 -51.93 -0.35 0.76 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.07 1.45 6.20 -51.93 -0.32 1.13 16 40 H 0.07 0.96 7.22 -51.93 -0.37 0.59 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.08 1.23 6.72 -51.93 -0.35 0.88 16 LS Contribution 360.17 15.07 5.43 5.43 Total: -1.00 -28.77 360.17 -10.77 -39.55 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.80 Total: 6.40 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -4.81 Total: 1.89 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: 0.33 Total: -60.77 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.10 Total: -8.42 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.77 -10.77 -39.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534079.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.414 kcal (2) G-P(sol) polarization free energy of solvation -28.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds