Wall clock time and date at job start Tue Mar 31 2020 17:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.45355 * 2 1 4 4 C 1.52992 * 109.44986 * 119.95270 * 2 1 3 5 5 C 1.50598 * 109.75576 * 167.62269 * 4 2 1 6 6 O 1.21273 * 119.63621 * 142.55676 * 5 4 2 7 7 N 1.34465 * 120.72600 * 322.53666 * 5 4 2 8 8 C 1.38779 * 120.73141 * 5.47961 * 7 5 4 9 9 N 1.33032 * 120.85929 * 193.46485 * 8 7 5 10 10 C 1.31801 * 120.69045 * 179.56279 * 9 8 7 11 11 N 1.31762 * 122.07214 * 0.45569 * 10 9 8 12 12 C 1.33265 * 120.83560 * 0.55914 * 11 10 9 13 13 N 1.38602 * 120.66356 * 179.69827 * 12 11 10 14 14 C 1.46909 * 110.99774 * 62.30204 * 13 12 11 15 15 C 1.50694 * 109.46947 * 294.05874 * 14 13 12 16 16 H 1.07997 * 120.00324 * 357.84522 * 15 14 13 17 17 C 1.37886 * 119.99559 * 177.85190 * 15 14 13 18 18 N 1.31506 * 120.00209 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99738 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47071 * 89.99982 * 19 17 15 21 21 H 1.48497 * 109.47158 * 210.00028 * 19 17 15 22 22 H 1.48505 * 109.47596 * 330.00199 * 19 17 15 23 23 C 1.46900 * 111.00381 * 298.35459 * 13 12 11 24 24 C 1.54273 * 110.02991 * 305.95487 * 23 13 12 25 25 C 1.54882 * 104.19511 * 217.10352 * 24 23 13 26 26 C 1.54893 * 102.74951 * 37.94352 * 25 24 23 27 27 C 1.53872 * 110.03550 * 188.79017 * 23 13 12 28 28 C 1.38745 * 120.14653 * 14.65650 * 8 7 5 29 29 H 1.08998 * 109.47554 * 287.53252 * 1 2 3 30 30 H 1.09001 * 109.46763 * 47.53821 * 1 2 3 31 31 H 1.09007 * 109.46764 * 167.53002 * 1 2 3 32 32 H 1.09004 * 109.41707 * 287.70488 * 4 2 1 33 33 H 1.08993 * 109.42519 * 47.53229 * 4 2 1 34 34 H 0.96997 * 119.63487 * 185.46827 * 7 5 4 35 35 H 1.08003 * 118.96053 * 180.48085 * 10 9 8 36 36 H 1.09000 * 109.46638 * 54.05996 * 14 13 12 37 37 H 1.09000 * 109.46950 * 174.05036 * 14 13 12 38 38 H 0.97004 * 120.00325 * 179.97438 * 18 17 15 39 39 H 1.08997 * 110.01773 * 67.39260 * 23 13 12 40 40 H 1.09006 * 110.48479 * 335.78614 * 24 23 13 41 41 H 1.09004 * 110.48425 * 98.42268 * 24 23 13 42 42 H 1.08996 * 110.75649 * 279.62735 * 25 24 23 43 43 H 1.09005 * 110.91248 * 156.32970 * 25 24 23 44 44 H 1.09002 * 110.48061 * 203.37705 * 26 25 24 45 45 H 1.08995 * 110.59641 * 80.79027 * 26 25 24 46 46 H 1.08997 * 110.03077 * 238.56616 * 27 23 13 47 47 H 1.08998 * 110.03030 * 359.94734 * 27 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0395 -0.7203 1.2499 5 6 3.5144 -0.9930 1.1147 6 8 4.2329 -0.9006 2.0873 7 7 4.0432 -1.3382 -0.0724 8 6 3.2650 -1.3414 -1.2215 9 7 3.6956 -1.9270 -2.3356 10 6 2.9501 -1.9355 -3.4225 11 7 1.7630 -1.3651 -3.4611 12 6 1.2701 -0.7407 -2.3920 13 7 0.0235 -0.1365 -2.4385 14 6 -1.0316 -1.1257 -2.6962 15 6 -0.8564 -1.6983 -4.0791 16 1 -0.0638 -1.3362 -4.7170 17 6 -1.7083 -2.6844 -4.5299 18 7 -2.6732 -3.1255 -3.7529 19 14 -1.4916 -3.3937 -6.2443 20 1 -0.5737 -4.5596 -6.1852 21 1 -2.8104 -3.8281 -6.7706 22 1 -0.9182 -2.3573 -7.1401 23 6 -0.0045 0.9363 -3.4416 24 6 1.1423 1.9345 -3.1799 25 6 0.5304 3.3149 -3.5245 26 6 -0.9201 3.1874 -2.9963 27 6 -1.3157 1.7330 -3.3249 28 6 2.0305 -0.7081 -1.2287 29 1 -0.3634 0.3096 0.9799 30 1 -0.3633 0.6938 -0.7582 31 1 -0.3633 -1.0035 -0.2219 32 1 1.8653 -0.0943 2.1252 33 1 1.5058 -1.6633 1.3677 34 1 4.9790 -1.5876 -0.1263 35 1 3.3240 -2.4258 -4.3092 36 1 -0.9660 -1.9269 -1.9601 37 1 -2.0068 -0.6441 -2.6230 38 1 -3.2727 -3.8190 -4.0702 39 1 0.0882 0.5141 -4.4422 40 1 1.4450 1.9019 -2.1332 41 1 1.9905 1.7200 -3.8301 42 1 0.5361 3.4819 -4.6016 43 1 1.0605 4.1154 -3.0082 44 1 -1.5769 3.8874 -3.5127 45 1 -0.9527 3.3578 -1.9203 46 1 -1.8591 1.6981 -4.2691 47 1 -1.9317 1.3230 -2.5246 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166534079.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:08 Heat of formation + Delta-G solvation = 20.165642 kcal Electronic energy + Delta-G solvation = -30531.133251 eV Core-core repulsion = 26713.728679 eV Total energy + Delta-G solvation = -3817.404573 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.91275 -41.04127 -39.79341 -37.42323 -37.07751 -35.53768 -34.28353 -32.95774 -31.34512 -29.68494 -28.96534 -28.86751 -27.60500 -25.57574 -25.04521 -23.72318 -22.52039 -21.53984 -21.12943 -20.26810 -19.71733 -18.71742 -18.12284 -17.88578 -17.25308 -17.03055 -16.54778 -16.30514 -16.01694 -15.89872 -15.56152 -15.20439 -14.98688 -14.80798 -14.34864 -14.17116 -14.05012 -13.35533 -13.29017 -13.16857 -12.93295 -12.79044 -12.62858 -12.49722 -12.39857 -12.33406 -12.00000 -11.86002 -11.81695 -11.71765 -11.70248 -11.47942 -11.32221 -11.18598 -11.16763 -10.65688 -10.50928 -10.06119 -9.70369 -9.13900 -8.07527 -6.14964 -0.10279 0.00723 1.34541 1.38717 1.41286 1.50161 1.56865 2.45543 2.81257 2.83628 3.04971 3.22852 3.36429 3.61910 3.63400 3.77987 3.84939 3.90436 3.96321 4.18419 4.24072 4.50973 4.63986 4.68418 4.71543 4.76508 4.81831 4.84541 4.90586 4.93218 4.99515 5.10002 5.17517 5.22144 5.28458 5.33317 5.34241 5.40110 5.42562 5.44345 5.53839 5.58998 5.62419 5.89211 5.95375 6.01734 6.20877 6.31236 6.52137 6.71067 7.03104 7.24217 7.52255 8.98213 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010787 B = 0.005521 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.112026 B = 5069.986607 C = 6221.513479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.019 4.019 3 H 0.102 0.898 4 C -0.132 4.132 5 C 0.537 3.463 6 O -0.547 6.547 7 N -0.638 5.638 8 C 0.395 3.605 9 N -0.563 5.563 10 C 0.317 3.683 11 N -0.550 5.550 12 C 0.387 3.613 13 N -0.462 5.462 14 C 0.209 3.791 15 C -0.522 4.522 16 H 0.082 0.918 17 C 0.010 3.990 18 N -0.933 5.933 19 Si 0.944 3.056 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.268 1.268 23 C 0.088 3.912 24 C -0.115 4.115 25 C -0.113 4.113 26 C -0.111 4.111 27 C -0.109 4.109 28 C -0.207 4.207 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.028 0.972 32 H 0.138 0.862 33 H 0.108 0.892 34 H 0.420 0.580 35 H 0.216 0.784 36 H 0.000 1.000 37 H 0.031 0.969 38 H 0.258 0.742 39 H 0.036 0.964 40 H 0.074 0.926 41 H 0.043 0.957 42 H 0.064 0.936 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.050 0.950 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.082 11.188 5.347 14.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.038 4.038 3 H 0.120 0.880 4 C -0.172 4.172 5 C 0.327 3.673 6 O -0.423 6.423 7 N -0.286 5.286 8 C 0.155 3.845 9 N -0.284 5.284 10 C 0.027 3.973 11 N -0.268 5.268 12 C 0.153 3.847 13 N -0.185 5.185 14 C 0.084 3.916 15 C -0.561 4.561 16 H 0.099 0.901 17 C -0.188 4.188 18 N -0.575 5.575 19 Si 0.772 3.228 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.192 1.192 23 C -0.019 4.019 24 C -0.153 4.153 25 C -0.150 4.150 26 C -0.148 4.148 27 C -0.148 4.148 28 C -0.216 4.216 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.047 0.953 32 H 0.156 0.844 33 H 0.126 0.874 34 H 0.260 0.740 35 H 0.232 0.768 36 H 0.019 0.981 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.093 0.907 41 H 0.062 0.938 42 H 0.083 0.917 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.069 0.931 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.377 10.957 5.636 14.899 hybrid contribution 0.131 -1.652 -1.417 2.180 sum 8.508 9.305 4.219 13.296 Atomic orbital electron populations 1.22116 0.91540 1.02874 1.02530 1.19731 0.98325 0.98453 0.87333 0.87998 1.22023 0.88727 1.04920 1.01490 1.21209 0.92217 0.73390 0.80525 1.90766 1.63339 1.51131 1.37042 1.43243 1.14395 1.65605 1.05313 1.18125 0.88419 0.90862 0.87057 1.67953 1.38238 1.22168 1.00067 1.25105 0.85348 0.91917 0.94946 1.69082 1.13705 1.11371 1.32654 1.20034 0.90695 0.86792 0.87223 1.61436 0.99521 1.11454 1.46085 1.19474 0.89095 0.88550 0.94432 1.22245 1.13357 1.19310 1.01196 0.90051 1.25614 0.95365 0.97529 1.00265 1.70048 1.19110 1.30411 1.37919 0.85759 0.76749 0.78663 0.81642 1.21093 1.21646 1.19236 1.22278 0.96426 0.90143 0.93073 1.22445 0.96134 0.95359 1.01334 1.22399 0.95982 0.95669 1.00996 1.22294 0.96157 0.94680 1.01680 1.22075 0.95836 0.95670 1.01174 1.20845 0.95470 1.06088 0.99225 0.91666 0.88491 0.95324 0.84421 0.87371 0.74044 0.76830 0.98145 0.95085 0.93336 0.94590 0.90725 0.93812 0.91749 0.89719 0.90729 0.90421 0.93138 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 7.55 71.98 0.54 -2.91 16 2 C -0.02 -0.45 2.84 -11.64 -0.03 -0.48 16 3 H 0.10 2.09 7.95 -2.39 -0.02 2.08 16 4 C -0.13 -2.78 5.39 29.81 0.16 -2.62 16 5 C 0.54 13.53 7.71 87.67 0.68 14.21 16 6 O -0.55 -16.46 17.91 -3.01 -0.05 -16.52 16 7 N -0.64 -16.08 5.36 -309.21 -1.66 -17.74 16 8 C 0.39 11.63 7.59 132.86 1.01 12.64 16 9 N -0.56 -17.41 10.48 -198.08 -2.08 -19.48 16 10 C 0.32 10.35 12.27 180.89 2.22 12.56 16 11 N -0.55 -21.08 7.51 -197.85 -1.49 -22.56 16 12 C 0.39 13.90 3.86 132.91 0.51 14.41 16 13 N -0.46 -16.69 0.55 -677.98 -0.37 -17.06 16 14 C 0.21 9.74 4.02 85.55 0.34 10.08 16 15 C -0.52 -26.82 7.16 25.60 0.18 -26.64 16 16 H 0.08 4.21 5.02 -2.91 -0.01 4.19 16 17 C 0.01 0.54 5.46 84.66 0.46 1.00 16 18 N -0.93 -53.77 13.29 21.45 0.28 -53.48 16 19 Si 0.94 43.89 29.54 68.60 2.03 45.92 16 20 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 23 C 0.09 2.96 2.19 45.64 0.10 3.06 16 24 C -0.11 -3.08 5.53 31.67 0.18 -2.90 16 25 C -0.11 -2.38 6.91 31.88 0.22 -2.16 16 26 C -0.11 -2.40 6.83 31.67 0.22 -2.18 16 27 C -0.11 -3.30 5.99 31.32 0.19 -3.12 16 28 C -0.21 -6.29 5.24 -19.65 -0.10 -6.39 16 29 H 0.06 1.32 8.09 -2.39 -0.02 1.30 16 30 H 0.10 2.73 5.91 -2.39 -0.01 2.71 16 31 H 0.03 0.92 6.33 -2.38 -0.02 0.90 16 32 H 0.14 2.22 8.14 -2.38 -0.02 2.20 16 33 H 0.11 2.30 8.08 -2.39 -0.02 2.28 16 34 H 0.42 9.49 8.90 -92.71 -0.82 8.66 16 35 H 0.22 5.65 8.06 -2.91 -0.02 5.62 16 36 H 0.00 0.02 7.23 -2.39 -0.02 0.01 16 37 H 0.03 1.54 6.68 -2.39 -0.02 1.53 16 38 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 39 H 0.04 1.48 6.20 -2.39 -0.01 1.46 16 40 H 0.07 1.92 7.22 -2.38 -0.02 1.90 16 41 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 44 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.06 2.10 6.72 -2.39 -0.02 2.08 16 Total: -1.00 -63.66 360.17 3.72 -59.93 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.18 Total: 22.41 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 6.87 Total: 18.58 kcal Atomic # 7 Polarization: -125.02 SS G_CDS: -5.30 Total: -130.33 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.05 Total: -16.52 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -63.66 3.72 -59.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534079.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.098 kcal (2) G-P(sol) polarization free energy of solvation -63.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds