Wall clock time and date at job start Tue Mar 31 2020 17:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.30356 * 2 1 4 4 C 1.54791 * 110.52422 * 237.77620 * 2 1 3 5 5 N 1.48144 * 104.41736 * 265.22290 * 4 2 1 6 6 C 1.34783 * 127.83922 * 140.36954 * 5 4 2 7 7 O 1.21281 * 120.00146 * 179.68385 * 6 5 4 8 8 C 1.50697 * 119.99698 * 359.67682 * 6 5 4 9 9 H 1.09001 * 110.67717 * 303.23484 * 8 6 5 10 10 C 1.54961 * 110.92464 * 66.54433 * 8 6 5 11 11 C 1.54270 * 104.16191 * 156.29299 * 10 8 6 12 12 C 1.53869 * 106.63967 * 336.44607 * 11 10 8 13 13 F 1.39903 * 110.03353 * 119.25685 * 12 11 10 14 14 F 1.39904 * 110.03453 * 240.64278 * 12 11 10 15 15 C 1.54268 * 106.60115 * 359.97438 * 12 11 10 16 16 C 1.48144 * 104.32386 * 320.10466 * 5 4 2 17 17 C 1.54282 * 110.34770 * 122.18124 * 2 1 3 18 18 C 1.53000 * 110.42743 * 359.95396 * 17 2 1 19 19 C 1.52996 * 110.34169 * 237.74118 * 17 2 1 20 20 N 1.46499 * 109.47300 * 183.00377 * 19 17 2 21 21 C 1.36933 * 120.00529 * 179.97438 * 20 19 17 22 22 H 1.08004 * 120.00231 * 0.02562 * 21 20 19 23 23 C 1.38808 * 120.00349 * 179.97438 * 21 20 19 24 24 N 1.31619 * 119.99919 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00323 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47090 * 90.00305 * 25 23 21 27 27 H 1.48493 * 109.47390 * 210.00482 * 25 23 21 28 28 H 1.48500 * 109.46821 * 330.00664 * 25 23 21 29 29 H 1.09000 * 109.46836 * 297.82033 * 1 2 3 30 30 H 1.08994 * 109.47651 * 57.82213 * 1 2 3 31 31 H 1.09006 * 109.47253 * 177.82362 * 1 2 3 32 32 H 1.08995 * 110.54620 * 146.48097 * 4 2 1 33 33 H 1.09004 * 110.46615 * 23.92050 * 4 2 1 34 34 H 1.08997 * 110.47708 * 37.63897 * 10 8 6 35 35 H 1.09002 * 110.53308 * 274.97289 * 10 8 6 36 36 H 1.09002 * 110.03399 * 217.13605 * 11 10 8 37 37 H 1.08995 * 110.02943 * 95.75505 * 11 10 8 38 38 H 1.08997 * 110.48788 * 142.28685 * 15 12 11 39 39 H 1.09001 * 110.48482 * 264.93365 * 15 12 11 40 40 H 1.08998 * 110.40447 * 158.63009 * 16 5 4 41 41 H 1.08997 * 110.40895 * 281.06360 * 16 5 4 42 42 H 1.09004 * 109.47180 * 177.04826 * 18 17 2 43 43 H 1.09001 * 109.47175 * 297.03828 * 18 17 2 44 44 H 1.08991 * 109.47597 * 57.04350 * 18 17 2 45 45 H 1.08996 * 109.47362 * 303.00772 * 19 17 2 46 46 H 1.09003 * 109.47379 * 63.00740 * 19 17 2 47 47 H 0.97005 * 119.99768 * 0.02562 * 20 19 17 48 48 H 0.97009 * 119.99871 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0727 -0.7730 -1.2264 5 7 2.3139 -2.1444 -0.7208 6 6 2.0774 -3.3118 -1.3516 7 8 2.3360 -4.3614 -0.8019 8 6 1.4913 -3.3126 -2.7400 9 1 0.5438 -2.7741 -2.7581 10 6 2.4865 -2.7058 -3.7611 11 6 2.0549 -3.3098 -5.1135 12 6 1.3065 -4.6157 -4.7940 13 9 -0.0085 -4.5422 -5.2658 14 9 1.9657 -5.7016 -5.3802 15 6 1.3095 -4.7610 -3.2582 16 6 2.8802 -1.9416 0.6331 17 6 2.0664 -0.7704 1.2243 18 6 0.9078 -1.3016 2.0706 19 6 2.9693 0.1325 2.0671 20 7 3.5246 -0.6370 3.1832 21 6 4.3678 -0.0343 4.0780 22 1 4.6233 1.0086 3.9613 23 6 4.8936 -0.7633 5.1358 24 7 4.5819 -2.0340 5.2785 25 14 6.0434 0.0592 6.3570 26 1 5.2506 0.6351 7.4728 27 1 6.9962 -0.9454 6.8937 28 1 6.7973 1.1417 5.6751 29 1 -0.3633 0.4796 0.9089 30 1 -0.3634 0.5472 -0.8697 31 1 -0.3634 -1.0270 -0.0390 32 1 3.0037 -0.3282 -1.5776 33 1 1.3320 -0.7876 -2.0260 34 1 3.5077 -3.0009 -3.5200 35 1 2.3974 -1.6196 -3.7827 36 1 2.9322 -3.5221 -5.7246 37 1 1.3939 -2.6191 -5.6369 38 1 0.3618 -5.1737 -2.9122 39 1 2.1404 -5.3886 -2.9359 40 1 2.7495 -2.8388 1.2380 41 1 3.9354 -1.6764 0.5678 42 1 1.3029 -1.8868 2.9011 43 1 0.3282 -0.4644 2.4596 44 1 0.2669 -1.9321 1.4545 45 1 3.7818 0.5133 1.4484 46 1 2.3867 0.9677 2.4560 47 1 3.2955 -1.5738 3.2879 48 1 4.9497 -2.5436 6.0175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181694275.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:36 Heat of formation + Delta-G solvation = -134.202596 kcal Electronic energy + Delta-G solvation = -29748.849002 eV Core-core repulsion = 25474.061334 eV Total energy + Delta-G solvation = -4274.787668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.19884 -47.26793 -40.57350 -38.80029 -36.75237 -34.84717 -33.16733 -31.53871 -29.97129 -29.60208 -28.68567 -27.21578 -25.58623 -25.44798 -23.41703 -22.26524 -21.31306 -21.10246 -19.31070 -18.54907 -18.07841 -17.44420 -16.92936 -16.90313 -16.01867 -15.86289 -15.40674 -14.85487 -14.73710 -14.49103 -14.32084 -14.10197 -13.92703 -13.65223 -13.60655 -13.43623 -13.15738 -12.99625 -12.64390 -12.52614 -12.38246 -12.19842 -12.08813 -12.08202 -11.69431 -11.52206 -11.31713 -11.31557 -11.25024 -11.04923 -11.00951 -10.82176 -10.45545 -10.36434 -10.21799 -9.91972 -9.79139 -9.62825 -8.89061 -8.63911 -6.93066 -5.76646 -3.05747 2.55442 2.84214 3.40000 3.43114 3.48110 3.50178 3.60382 3.72925 4.01342 4.41420 4.50251 4.52210 4.59107 4.70787 4.74292 4.82843 4.83210 4.85941 4.97455 5.22854 5.25513 5.33167 5.38419 5.40774 5.45511 5.54345 5.58456 5.60821 5.62312 5.70113 5.77690 5.86750 5.95996 6.03444 6.07085 6.13839 6.19872 6.23791 6.41639 6.55914 6.64980 6.74495 6.83641 7.58429 7.69039 8.13033 8.41736 9.53149 10.10316 10.44589 11.45920 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.021147 B = 0.002655 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.767954 B =10542.937245 C =11142.972315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.088 0.912 4 C 0.103 3.897 5 N -0.616 5.616 6 C 0.541 3.459 7 O -0.536 6.536 8 C -0.110 4.110 9 H 0.110 0.890 10 C -0.111 4.111 11 C -0.162 4.162 12 C 0.281 3.719 13 F -0.199 7.199 14 F -0.198 7.198 15 C -0.143 4.143 16 C 0.119 3.881 17 C -0.075 4.075 18 C -0.131 4.131 19 C 0.168 3.832 20 N -0.731 5.731 21 C -0.241 4.241 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.047 0.953 45 H 0.020 0.980 46 H 0.022 0.978 47 H 0.385 0.615 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.444 1.621 -22.435 24.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.106 0.894 4 C -0.020 4.020 5 N -0.350 5.350 6 C 0.329 3.671 7 O -0.413 6.413 8 C -0.131 4.131 9 H 0.128 0.872 10 C -0.148 4.148 11 C -0.200 4.200 12 C 0.245 3.755 13 F -0.180 7.180 14 F -0.179 7.179 15 C -0.181 4.181 16 C -0.002 4.002 17 C -0.076 4.076 18 C -0.189 4.189 19 C 0.040 3.960 20 N -0.375 5.375 21 C -0.372 4.372 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.131 0.869 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.038 0.962 46 H 0.040 0.960 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.230 1.031 -22.138 24.008 hybrid contribution 0.495 0.095 0.664 0.834 sum -8.735 1.126 -21.474 23.210 Atomic orbital electron populations 1.21905 0.94534 1.01815 1.01665 1.22210 0.96216 0.99547 0.93803 0.89363 1.22637 1.00527 0.81948 0.96899 1.48980 1.62725 1.05145 1.18124 1.19721 0.78359 0.82399 0.86667 1.90750 1.52692 1.30458 1.67371 1.22179 1.00866 0.97236 0.92815 0.87239 1.22380 0.99571 1.01212 0.91679 1.23174 1.02190 0.94850 0.99755 1.21801 0.75835 0.85713 0.92188 1.93021 1.38024 1.96624 1.90285 1.93026 1.80645 1.57963 1.86217 1.23211 1.06951 0.97815 0.90110 1.22502 0.97286 0.99003 0.81451 1.21701 0.96238 0.95159 0.94505 1.21857 0.96836 1.00739 0.99422 1.20710 0.93292 0.92837 0.89125 1.42390 1.55843 1.11092 1.28224 1.19193 1.19611 0.94694 1.03720 0.91252 1.24736 1.01034 0.95903 0.99181 1.69659 1.48433 1.07046 1.32824 0.86209 0.80470 0.78115 0.81480 1.21769 1.21804 1.20813 0.91799 0.93160 0.92467 0.90769 0.90490 0.89793 0.89266 0.88318 0.88381 0.88355 0.86864 0.89630 0.90306 0.91576 0.92480 0.93372 0.96249 0.95993 0.78066 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 7.95 37.16 0.30 -1.04 16 2 C -0.10 -1.05 3.31 -89.01 -0.29 -1.34 16 3 H 0.09 0.89 7.71 -51.93 -0.40 0.49 16 4 C 0.10 0.95 5.62 -2.19 -0.01 0.94 16 5 N -0.62 -7.80 3.31 -169.06 -0.56 -8.36 16 6 C 0.54 7.18 7.26 -10.98 -0.08 7.10 16 7 O -0.54 -9.49 16.00 5.56 0.09 -9.40 16 8 C -0.11 -0.99 2.46 -89.74 -0.22 -1.21 16 9 H 0.11 0.80 7.85 -51.93 -0.41 0.39 16 10 C -0.11 -0.75 5.77 -25.03 -0.14 -0.90 16 11 C -0.16 -1.04 6.50 -25.61 -0.17 -1.21 16 12 C 0.28 2.56 2.57 -25.62 -0.07 2.49 16 13 F -0.20 -2.01 17.04 2.25 0.04 -1.97 16 14 F -0.20 -2.15 17.04 2.25 0.04 -2.11 16 15 C -0.14 -1.39 5.48 -25.07 -0.14 -1.53 16 16 C 0.12 1.90 5.54 -2.41 -0.01 1.88 16 17 C -0.07 -1.10 0.73 -153.11 -0.11 -1.21 16 18 C -0.13 -2.01 7.08 37.16 0.26 -1.75 16 19 C 0.17 3.12 4.85 -4.04 -0.02 3.10 16 20 N -0.73 -17.67 5.12 -59.91 -0.31 -17.98 16 21 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 22 H 0.07 1.84 7.83 -52.48 -0.41 1.42 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 25 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 29 H 0.06 0.64 6.89 -51.93 -0.36 0.28 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.58 6.73 -51.93 -0.35 0.23 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.52 6.44 -51.93 -0.33 0.18 16 34 H 0.08 0.65 8.05 -51.93 -0.42 0.23 16 35 H 0.09 0.44 7.14 -51.93 -0.37 0.07 16 36 H 0.10 0.57 8.02 -51.93 -0.42 0.15 16 37 H 0.10 0.50 8.02 -51.93 -0.42 0.08 16 38 H 0.10 0.93 8.11 -51.93 -0.42 0.51 16 39 H 0.11 1.27 7.42 -51.93 -0.39 0.89 16 40 H 0.09 1.61 7.60 -51.93 -0.39 1.21 16 41 H 0.08 1.36 7.86 -51.93 -0.41 0.95 16 42 H 0.07 1.22 7.00 -51.93 -0.36 0.85 16 43 H 0.06 0.83 6.99 -51.93 -0.36 0.47 16 44 H 0.05 0.68 6.62 -51.93 -0.34 0.33 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.38 9.90 6.27 -40.82 -0.26 9.65 16 48 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 376.46 15.07 5.67 5.67 Total: -1.00 -32.40 376.46 -7.92 -40.33 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -7.64 Total: 5.73 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -0.95 Total: -1.85 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.14 Total: -53.61 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.08 Total: -4.08 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.40 -7.92 -40.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181694275.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.877 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds