Wall clock time and date at job start Tue Mar 31 2020 17:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.30356 * 2 1 4 4 C 1.54791 * 110.52422 * 237.77620 * 2 1 3 5 5 N 1.48144 * 104.41736 * 265.22290 * 4 2 1 6 6 C 1.34783 * 127.83922 * 140.36954 * 5 4 2 7 7 O 1.21281 * 120.00146 * 179.68385 * 6 5 4 8 8 C 1.50697 * 119.99698 * 359.67682 * 6 5 4 9 9 H 1.09001 * 110.67717 * 303.23484 * 8 6 5 10 10 C 1.54961 * 110.92464 * 66.54433 * 8 6 5 11 11 C 1.54270 * 104.16191 * 156.29299 * 10 8 6 12 12 C 1.53869 * 106.63967 * 336.44607 * 11 10 8 13 13 F 1.39903 * 110.03353 * 119.25685 * 12 11 10 14 14 F 1.39904 * 110.03453 * 240.64278 * 12 11 10 15 15 C 1.54268 * 106.60115 * 359.97438 * 12 11 10 16 16 C 1.48144 * 104.32386 * 320.10466 * 5 4 2 17 17 C 1.54282 * 110.34770 * 122.18124 * 2 1 3 18 18 C 1.53000 * 110.42743 * 359.95396 * 17 2 1 19 19 C 1.52996 * 110.34169 * 237.74118 * 17 2 1 20 20 N 1.46499 * 109.47300 * 183.00377 * 19 17 2 21 21 C 1.36933 * 120.00529 * 179.97438 * 20 19 17 22 22 H 1.08004 * 120.00231 * 0.02562 * 21 20 19 23 23 C 1.38808 * 120.00349 * 179.97438 * 21 20 19 24 24 N 1.31619 * 119.99919 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00323 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47090 * 90.00305 * 25 23 21 27 27 H 1.48493 * 109.47390 * 210.00482 * 25 23 21 28 28 H 1.48500 * 109.46821 * 330.00664 * 25 23 21 29 29 H 1.09000 * 109.46836 * 297.82033 * 1 2 3 30 30 H 1.08994 * 109.47651 * 57.82213 * 1 2 3 31 31 H 1.09006 * 109.47253 * 177.82362 * 1 2 3 32 32 H 1.08995 * 110.54620 * 146.48097 * 4 2 1 33 33 H 1.09004 * 110.46615 * 23.92050 * 4 2 1 34 34 H 1.08997 * 110.47708 * 37.63897 * 10 8 6 35 35 H 1.09002 * 110.53308 * 274.97289 * 10 8 6 36 36 H 1.09002 * 110.03399 * 217.13605 * 11 10 8 37 37 H 1.08995 * 110.02943 * 95.75505 * 11 10 8 38 38 H 1.08997 * 110.48788 * 142.28685 * 15 12 11 39 39 H 1.09001 * 110.48482 * 264.93365 * 15 12 11 40 40 H 1.08998 * 110.40447 * 158.63009 * 16 5 4 41 41 H 1.08997 * 110.40895 * 281.06360 * 16 5 4 42 42 H 1.09004 * 109.47180 * 177.04826 * 18 17 2 43 43 H 1.09001 * 109.47175 * 297.03828 * 18 17 2 44 44 H 1.08991 * 109.47597 * 57.04350 * 18 17 2 45 45 H 1.08996 * 109.47362 * 303.00772 * 19 17 2 46 46 H 1.09003 * 109.47379 * 63.00740 * 19 17 2 47 47 H 0.97005 * 119.99768 * 0.02562 * 20 19 17 48 48 H 0.97009 * 119.99871 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0727 -0.7730 -1.2264 5 7 2.3139 -2.1444 -0.7208 6 6 2.0774 -3.3118 -1.3516 7 8 2.3360 -4.3614 -0.8019 8 6 1.4913 -3.3126 -2.7400 9 1 0.5438 -2.7741 -2.7581 10 6 2.4865 -2.7058 -3.7611 11 6 2.0549 -3.3098 -5.1135 12 6 1.3065 -4.6157 -4.7940 13 9 -0.0085 -4.5422 -5.2658 14 9 1.9657 -5.7016 -5.3802 15 6 1.3095 -4.7610 -3.2582 16 6 2.8802 -1.9416 0.6331 17 6 2.0664 -0.7704 1.2243 18 6 0.9078 -1.3016 2.0706 19 6 2.9693 0.1325 2.0671 20 7 3.5246 -0.6370 3.1832 21 6 4.3678 -0.0343 4.0780 22 1 4.6233 1.0086 3.9613 23 6 4.8936 -0.7633 5.1358 24 7 4.5819 -2.0340 5.2785 25 14 6.0434 0.0592 6.3570 26 1 5.2506 0.6351 7.4728 27 1 6.9962 -0.9454 6.8937 28 1 6.7973 1.1417 5.6751 29 1 -0.3633 0.4796 0.9089 30 1 -0.3634 0.5472 -0.8697 31 1 -0.3634 -1.0270 -0.0390 32 1 3.0037 -0.3282 -1.5776 33 1 1.3320 -0.7876 -2.0260 34 1 3.5077 -3.0009 -3.5200 35 1 2.3974 -1.6196 -3.7827 36 1 2.9322 -3.5221 -5.7246 37 1 1.3939 -2.6191 -5.6369 38 1 0.3618 -5.1737 -2.9122 39 1 2.1404 -5.3886 -2.9359 40 1 2.7495 -2.8388 1.2380 41 1 3.9354 -1.6764 0.5678 42 1 1.3029 -1.8868 2.9011 43 1 0.3282 -0.4644 2.4596 44 1 0.2669 -1.9321 1.4545 45 1 3.7818 0.5133 1.4484 46 1 2.3867 0.9677 2.4560 47 1 3.2955 -1.5738 3.2879 48 1 4.9497 -2.5436 6.0175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181694275.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:35 Heat of formation + Delta-G solvation = -154.152429 kcal Electronic energy + Delta-G solvation = -29749.714092 eV Core-core repulsion = 25474.061334 eV Total energy + Delta-G solvation = -4275.652758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.94947 -48.03307 -41.61739 -39.85524 -37.58623 -36.48643 -34.55804 -33.03766 -31.29888 -30.46274 -29.52118 -28.32751 -26.94703 -26.58371 -25.07441 -23.24465 -22.19810 -21.95501 -20.29093 -19.81183 -19.15787 -18.66905 -18.09123 -17.69231 -17.17127 -16.76835 -16.52239 -16.28495 -15.65118 -15.61086 -15.40187 -15.34543 -15.03746 -14.70829 -14.67579 -14.47427 -14.37738 -14.20428 -13.81783 -13.59607 -13.20208 -13.14645 -13.05034 -13.01661 -12.83318 -12.75990 -12.55176 -12.47908 -12.38467 -12.31918 -12.07958 -11.94431 -11.90109 -11.67669 -11.45842 -11.35099 -11.17873 -10.94098 -10.85311 -9.73068 -8.96666 -7.93203 -5.21497 1.47076 1.48784 1.54383 1.57151 1.84785 2.56831 2.73809 2.90336 3.03458 3.31938 3.40577 3.49347 3.59932 3.81754 3.84669 3.89727 4.03808 4.15720 4.19161 4.23649 4.31238 4.31427 4.35594 4.38468 4.58784 4.66163 4.68390 4.74204 4.80770 4.86219 4.87703 4.91525 4.95791 5.02610 5.04892 5.08863 5.10780 5.13402 5.16943 5.29642 5.41372 5.47354 5.52739 5.63402 6.28485 6.58907 7.09376 7.35012 8.13004 8.34001 9.30464 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.021147 B = 0.002655 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.767954 B =10542.937245 C =11142.972315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 H 0.105 0.895 4 C 0.101 3.899 5 N -0.612 5.612 6 C 0.534 3.466 7 O -0.594 6.594 8 C -0.098 4.098 9 H 0.141 0.859 10 C -0.105 4.105 11 C -0.151 4.151 12 C 0.277 3.723 13 F -0.203 7.203 14 F -0.212 7.212 15 C -0.147 4.147 16 C 0.124 3.876 17 C -0.067 4.067 18 C -0.123 4.123 19 C 0.167 3.833 20 N -0.744 5.744 21 C -0.239 4.239 22 H 0.079 0.921 23 C -0.079 4.079 24 N -0.972 5.972 25 Si 0.972 3.028 26 H -0.288 1.288 27 H -0.300 1.300 28 H -0.267 1.267 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.070 0.930 35 H 0.123 0.877 36 H 0.107 0.893 37 H 0.123 0.877 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.041 0.959 41 H 0.061 0.939 42 H 0.023 0.977 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.028 0.972 46 H 0.028 0.972 47 H 0.372 0.628 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.428 4.888 -25.367 27.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 H 0.123 0.877 4 C -0.020 4.020 5 N -0.344 5.344 6 C 0.325 3.675 7 O -0.474 6.474 8 C -0.119 4.119 9 H 0.158 0.842 10 C -0.143 4.143 11 C -0.189 4.189 12 C 0.241 3.759 13 F -0.184 7.184 14 F -0.193 7.193 15 C -0.186 4.186 16 C 0.000 4.000 17 C -0.069 4.069 18 C -0.180 4.180 19 C 0.040 3.960 20 N -0.387 5.387 21 C -0.371 4.371 22 H 0.097 0.903 23 C -0.271 4.271 24 N -0.624 5.624 25 Si 0.802 3.198 26 H -0.215 1.215 27 H -0.227 1.227 28 H -0.191 1.191 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.111 0.889 33 H 0.137 0.863 34 H 0.089 0.911 35 H 0.141 0.859 36 H 0.125 0.875 37 H 0.142 0.858 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.042 0.958 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.205 0.795 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.233 4.376 -25.124 27.479 hybrid contribution 0.767 -0.938 1.561 1.976 sum -9.466 3.438 -23.563 25.625 Atomic orbital electron populations 1.21888 0.93092 1.01774 1.02890 1.22234 0.97329 0.99789 0.91675 0.87683 1.22968 1.02701 0.79176 0.97139 1.49020 1.61887 1.06808 1.16679 1.20584 0.77441 0.81543 0.87972 1.90729 1.55074 1.32629 1.69011 1.22197 1.02489 0.97167 0.90056 0.84176 1.22439 0.98061 1.03043 0.90707 1.23179 1.02616 0.93330 0.99747 1.22035 0.75896 0.86701 0.91282 1.93011 1.38507 1.96662 1.90231 1.92999 1.80918 1.59046 1.86333 1.23178 1.05834 0.98374 0.91201 1.22160 0.96876 0.97635 0.83280 1.21582 0.95036 0.94560 0.95682 1.21767 0.97197 1.00657 0.98352 1.20911 0.93963 0.93092 0.88019 1.42641 1.55709 1.10977 1.29403 1.19653 1.18778 0.95032 1.03629 0.90298 1.25568 1.03438 0.96536 1.01556 1.69840 1.50305 1.08666 1.33545 0.85153 0.78362 0.77182 0.79151 1.21506 1.22694 1.19129 0.92592 0.89838 0.93290 0.88916 0.86321 0.91089 0.85879 0.87465 0.85828 0.88720 0.89261 0.93980 0.92112 0.95821 0.91463 0.92158 0.95427 0.95408 0.79539 0.94242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 7.95 71.98 0.57 -1.47 16 2 C -0.09 -1.61 3.31 -9.75 -0.03 -1.64 16 3 H 0.11 1.61 7.71 -2.39 -0.02 1.59 16 4 C 0.10 1.43 5.62 86.67 0.49 1.92 16 5 N -0.61 -14.73 3.31 -807.18 -2.67 -17.41 16 6 C 0.53 13.96 7.26 87.66 0.64 14.60 16 7 O -0.59 -22.27 16.00 -3.03 -0.05 -22.32 16 8 C -0.10 -1.52 2.46 -10.22 -0.03 -1.55 16 9 H 0.14 1.38 7.85 -2.39 -0.02 1.36 16 10 C -0.10 -1.02 5.77 31.70 0.18 -0.84 16 11 C -0.15 -1.38 6.50 31.32 0.20 -1.18 16 12 C 0.28 4.55 2.57 31.32 0.08 4.63 16 13 F -0.20 -3.66 17.04 44.97 0.77 -2.89 16 14 F -0.21 -4.48 17.04 44.97 0.77 -3.72 16 15 C -0.15 -2.80 5.48 31.67 0.17 -2.63 16 16 C 0.12 4.08 5.54 86.53 0.48 4.56 16 17 C -0.07 -1.95 0.73 -51.28 -0.04 -1.99 16 18 C -0.12 -3.82 7.08 71.98 0.51 -3.31 16 19 C 0.17 6.10 4.85 86.38 0.42 6.52 16 20 N -0.74 -37.03 5.12 -343.46 -1.76 -38.79 16 21 C -0.24 -13.18 9.99 84.03 0.84 -12.34 16 22 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 23 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 24 N -0.97 -60.87 13.06 21.65 0.28 -60.59 16 25 Si 0.97 46.42 29.55 68.60 2.03 48.45 16 26 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 27 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 28 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 29 H 0.06 0.93 6.89 -2.39 -0.02 0.91 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.81 6.73 -2.38 -0.02 0.80 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.12 0.78 6.44 -2.39 -0.02 0.76 16 34 H 0.07 0.92 8.05 -2.39 -0.02 0.90 16 35 H 0.12 0.43 7.14 -2.39 -0.02 0.41 16 36 H 0.11 0.87 8.02 -2.39 -0.02 0.85 16 37 H 0.12 0.58 8.02 -2.39 -0.02 0.56 16 38 H 0.09 1.81 8.11 -2.39 -0.02 1.79 16 39 H 0.09 2.14 7.42 -2.39 -0.02 2.12 16 40 H 0.04 1.73 7.60 -2.39 -0.02 1.71 16 41 H 0.06 2.19 7.86 -2.39 -0.02 2.17 16 42 H 0.02 0.91 7.00 -2.38 -0.02 0.90 16 43 H 0.07 1.92 6.99 -2.39 -0.02 1.91 16 44 H 0.06 1.70 6.62 -2.39 -0.02 1.69 16 45 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.37 20.31 6.27 -92.70 -0.58 19.73 16 48 H 0.25 15.19 8.31 -92.70 -0.77 14.42 16 Total: -1.00 -76.27 376.46 4.70 -71.56 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.39 Total: 24.52 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 4.95 Total: 1.18 kcal Atomic # 7 Polarization: -112.63 SS G_CDS: -4.15 Total: -116.78 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.05 Total: -22.32 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 1.53 Total: -6.61 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -76.27 4.70 -71.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181694275.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.588 kcal (2) G-P(sol) polarization free energy of solvation -76.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds