Wall clock time and date at job start Tue Mar 31 2020 17:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.30571 * 2 1 4 4 C 1.54394 * 110.34346 * 237.82608 * 2 1 3 5 5 N 1.48141 * 104.61775 * 217.15634 * 4 2 1 6 6 C 1.34781 * 127.83878 * 219.58767 * 5 4 2 7 7 O 1.21278 * 119.99864 * 354.94459 * 6 5 4 8 8 C 1.50695 * 120.00250 * 175.22141 * 6 5 4 9 9 H 1.09008 * 110.43330 * 334.79880 * 8 6 5 10 10 C 1.54265 * 110.48720 * 212.25598 * 8 6 5 11 11 C 1.53874 * 106.59792 * 217.70881 * 10 8 6 12 12 C 1.54267 * 106.59751 * 359.97438 * 11 10 8 13 13 F 1.39906 * 110.48347 * 142.28852 * 12 11 10 14 14 F 1.39901 * 110.48932 * 264.92583 * 12 11 10 15 15 C 1.54891 * 110.49051 * 97.33487 * 8 6 5 16 16 C 1.48148 * 104.32634 * 39.84402 * 5 4 2 17 17 C 1.54285 * 110.43177 * 122.23352 * 2 1 3 18 18 C 1.52999 * 110.34517 * 0.04986 * 17 2 1 19 19 C 1.53003 * 110.34224 * 237.89134 * 17 2 1 20 20 N 1.46505 * 109.46922 * 180.02562 * 19 17 2 21 21 C 1.36939 * 119.99772 * 180.02562 * 20 19 17 22 22 H 1.07993 * 119.99783 * 359.97438 * 21 20 19 23 23 C 1.38813 * 119.99722 * 179.97438 * 21 20 19 24 24 N 1.31620 * 119.99918 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99723 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47272 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47244 * 120.00135 * 25 23 21 28 28 H 1.48500 * 109.46898 * 240.00039 * 25 23 21 29 29 H 1.09005 * 109.46842 * 180.72083 * 1 2 3 30 30 H 1.09002 * 109.47066 * 300.71728 * 1 2 3 31 31 H 1.08996 * 109.47414 * 60.72101 * 1 2 3 32 32 H 1.09001 * 110.40590 * 98.37003 * 4 2 1 33 33 H 1.09001 * 110.40357 * 335.94046 * 4 2 1 34 34 H 1.08996 * 110.03118 * 336.99735 * 10 8 6 35 35 H 1.09006 * 110.03221 * 98.42468 * 10 8 6 36 36 H 1.09004 * 110.03032 * 119.28474 * 11 10 8 37 37 H 1.09008 * 110.03225 * 240.66546 * 11 10 8 38 38 H 1.08997 * 110.75855 * 274.94286 * 15 8 6 39 39 H 1.09004 * 110.75164 * 38.30759 * 15 8 6 40 40 H 1.09001 * 110.40727 * 78.93976 * 16 5 4 41 41 H 1.08998 * 110.41050 * 201.37080 * 16 5 4 42 42 H 1.08994 * 109.47156 * 59.99452 * 18 17 2 43 43 H 1.08996 * 109.46840 * 179.97438 * 18 17 2 44 44 H 1.09003 * 109.46687 * 299.99546 * 18 17 2 45 45 H 1.08998 * 109.47285 * 299.99855 * 19 17 2 46 46 H 1.08991 * 109.47056 * 60.00535 * 19 17 2 47 47 H 0.96998 * 119.99846 * 359.97438 * 20 19 17 48 48 H 0.97001 * 119.99288 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7709 -1.2253 5 7 3.2679 -1.4789 -0.7248 6 6 4.4437 -1.6616 -1.3579 7 8 4.5757 -1.3000 -2.5079 8 6 5.5922 -2.3208 -0.6387 9 1 5.4936 -2.1872 0.4386 10 6 6.9375 -1.7501 -1.1328 11 6 7.9250 -2.9293 -1.1785 12 6 7.1454 -4.1753 -0.7100 13 9 7.5337 -5.3007 -1.4448 14 9 7.3427 -4.3906 0.6582 15 6 5.6616 -3.8269 -0.9939 16 6 2.8814 -1.9460 0.6269 17 6 2.0686 -0.7711 1.2230 18 6 0.9100 -1.3052 2.0676 19 6 2.9688 0.1329 2.0675 20 7 3.4696 -0.6177 3.2218 21 6 4.2999 -0.0103 4.1255 22 1 4.5860 1.0219 3.9871 23 6 4.7740 -0.7213 5.2194 24 7 4.4257 -1.9793 5.3877 25 14 5.9073 0.1071 6.4518 26 1 6.1464 1.5128 6.0373 27 1 5.2761 0.0874 7.7959 28 1 7.2008 -0.6206 6.5016 29 1 -0.3633 -1.0276 0.0129 30 1 -0.3633 0.5249 0.8835 31 1 -0.3634 0.5026 -0.8963 32 1 2.3383 -0.0776 -2.0214 33 1 1.3241 -1.4858 -1.5796 34 1 6.8189 -1.3235 -2.1288 35 1 7.2969 -0.9887 -0.4404 36 1 8.2857 -3.0750 -2.1967 37 1 8.7641 -2.7398 -0.5089 38 1 4.9971 -4.4060 -0.3527 39 1 5.4221 -3.9872 -2.0452 40 1 2.2642 -2.8418 0.5574 41 1 3.7683 -2.1404 1.2299 42 1 0.2999 -1.9771 1.4640 43 1 1.3061 -1.8472 2.9263 44 1 0.2986 -0.4718 2.4139 45 1 3.8098 0.4742 1.4640 46 1 2.3969 0.9937 2.4138 47 1 3.2123 -1.5446 3.3462 48 1 4.7567 -2.4760 6.1524 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181694279.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:38 Heat of formation + Delta-G solvation = -149.695962 kcal Electronic energy + Delta-G solvation = -30437.332483 eV Core-core repulsion = 26161.872972 eV Total energy + Delta-G solvation = -4275.459511 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.95464 -48.09714 -41.62640 -39.93272 -37.56645 -36.38924 -34.65450 -33.23944 -31.22846 -30.60192 -29.36801 -28.04062 -27.17611 -26.69416 -25.14495 -23.26572 -22.22332 -22.00763 -20.28475 -19.65218 -19.16961 -18.84726 -18.07419 -17.81369 -16.94701 -16.76699 -16.63900 -16.38182 -16.10080 -15.67201 -15.34534 -15.20071 -15.14702 -14.84678 -14.58590 -14.48946 -14.42305 -14.21067 -13.91063 -13.50456 -13.23676 -13.20248 -12.95876 -12.92008 -12.90072 -12.72380 -12.63398 -12.60304 -12.45929 -12.28019 -12.03242 -11.93704 -11.82854 -11.71852 -11.57336 -11.26278 -11.16400 -10.97700 -10.88259 -9.77753 -8.94729 -7.92746 -5.19248 1.40453 1.47105 1.48553 1.57036 1.85601 2.56926 2.64072 2.77428 3.08420 3.24375 3.40891 3.48077 3.54251 3.77222 3.78501 3.90409 4.02833 4.11263 4.15383 4.19576 4.23596 4.28883 4.37446 4.40353 4.50804 4.60104 4.61901 4.72280 4.78116 4.81071 4.82147 4.85031 4.90751 4.99791 5.04251 5.07278 5.12792 5.13844 5.26139 5.29537 5.40925 5.45862 5.53006 5.67476 6.30051 6.44755 7.01446 7.38258 8.12933 8.38371 9.30200 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.007865 B = 0.005331 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3559.341151 B = 5250.661281 C = 7897.377806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 H 0.073 0.927 4 C 0.110 3.890 5 N -0.617 5.617 6 C 0.548 3.452 7 O -0.571 6.571 8 C -0.113 4.113 9 H 0.095 0.905 10 C -0.106 4.106 11 C -0.150 4.150 12 C 0.274 3.726 13 F -0.200 7.200 14 F -0.205 7.205 15 C -0.135 4.135 16 C 0.108 3.892 17 C -0.069 4.069 18 C -0.127 4.127 19 C 0.170 3.830 20 N -0.735 5.735 21 C -0.240 4.240 22 H 0.068 0.932 23 C -0.066 4.066 24 N -0.962 5.962 25 Si 0.961 3.039 26 H -0.270 1.270 27 H -0.294 1.294 28 H -0.296 1.296 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.038 0.962 44 H 0.064 0.936 45 H 0.005 0.995 46 H 0.019 0.981 47 H 0.379 0.621 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.864 -1.513 -15.817 16.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.109 4.109 3 H 0.091 0.909 4 C -0.012 4.012 5 N -0.348 5.348 6 C 0.338 3.662 7 O -0.451 6.451 8 C -0.135 4.135 9 H 0.113 0.887 10 C -0.144 4.144 11 C -0.188 4.188 12 C 0.238 3.762 13 F -0.181 7.181 14 F -0.186 7.186 15 C -0.174 4.174 16 C -0.014 4.014 17 C -0.071 4.071 18 C -0.185 4.185 19 C 0.043 3.957 20 N -0.379 5.379 21 C -0.372 4.372 22 H 0.086 0.914 23 C -0.259 4.259 24 N -0.612 5.612 25 Si 0.791 3.209 26 H -0.195 1.195 27 H -0.221 1.221 28 H -0.223 1.223 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.137 0.863 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.132 0.868 40 H 0.112 0.888 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.057 0.943 44 H 0.083 0.917 45 H 0.023 0.977 46 H 0.037 0.963 47 H 0.213 0.787 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.582 -1.212 -16.400 16.831 hybrid contribution 0.878 -0.095 1.438 1.687 sum -2.704 -1.308 -14.963 15.261 Atomic orbital electron populations 1.21858 0.91768 1.03170 1.02564 1.22093 0.97883 0.98799 0.92108 0.90858 1.22560 0.85970 0.95942 0.96726 1.49018 1.12931 1.54828 1.18055 1.19976 0.82322 0.78273 0.85667 1.90645 1.82822 1.53530 1.18128 1.22040 0.94562 0.95349 1.01536 0.88689 1.22050 0.91013 0.97616 1.03696 1.23114 0.99063 0.91033 1.05603 1.22116 0.96960 0.84117 0.73039 1.92988 1.92591 1.55776 1.76771 1.93040 1.96258 1.95686 1.33641 1.23333 0.93838 0.94579 1.05627 1.22754 0.99711 0.97197 0.81772 1.21674 0.95537 0.94849 0.95007 1.21824 0.96472 1.01315 0.98878 1.20739 0.93924 0.93522 0.87527 1.42522 1.56955 1.12709 1.25665 1.19538 1.19990 0.95656 1.02006 0.91404 1.25367 1.02988 0.96725 1.00813 1.69777 1.50465 1.09498 1.31507 0.85252 0.78413 0.77984 0.79206 1.19503 1.22086 1.22302 0.90904 0.91912 0.91266 0.90692 0.88965 0.88927 0.90053 0.86343 0.88005 0.88012 0.86782 0.88842 0.91185 0.89924 0.94322 0.91745 0.97690 0.96347 0.78742 0.94090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 7.93 71.98 0.57 -1.58 16 2 C -0.09 -1.93 3.30 -9.89 -0.03 -1.96 16 3 H 0.07 1.73 7.71 -2.39 -0.02 1.71 16 4 C 0.11 2.41 6.57 86.54 0.57 2.98 16 5 N -0.62 -16.49 3.31 -807.14 -2.67 -19.17 16 6 C 0.55 16.01 6.98 87.65 0.61 16.62 16 7 O -0.57 -19.09 16.09 -3.02 -0.05 -19.14 16 8 C -0.11 -3.04 2.90 -10.47 -0.03 -3.07 16 9 H 0.09 2.94 6.50 -2.38 -0.02 2.92 16 10 C -0.11 -2.52 6.33 31.32 0.20 -2.32 16 11 C -0.15 -3.12 6.41 31.32 0.20 -2.92 16 12 C 0.27 6.84 2.49 31.72 0.08 6.92 16 13 F -0.20 -5.11 17.17 44.97 0.77 -4.34 16 14 F -0.21 -6.36 17.17 44.97 0.77 -5.59 16 15 C -0.14 -3.19 5.92 31.94 0.19 -3.01 16 16 C 0.11 2.96 5.82 86.68 0.50 3.47 16 17 C -0.07 -1.90 0.73 -51.13 -0.04 -1.94 16 18 C -0.13 -3.26 7.11 71.98 0.51 -2.75 16 19 C 0.17 6.33 4.96 86.38 0.43 6.76 16 20 N -0.73 -34.58 4.80 -343.45 -1.65 -36.23 16 21 C -0.24 -12.90 9.99 84.03 0.84 -12.06 16 22 H 0.07 3.60 7.83 -2.91 -0.02 3.57 16 23 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 24 N -0.96 -56.61 13.06 21.65 0.28 -56.33 16 25 Si 0.96 45.46 29.55 68.60 2.03 47.49 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 27 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 28 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 29 H 0.07 1.00 6.62 -2.38 -0.02 0.99 16 30 H 0.06 1.04 6.99 -2.39 -0.02 1.02 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 1.74 7.93 -2.39 -0.02 1.72 16 33 H 0.09 1.65 7.86 -2.39 -0.02 1.63 16 34 H 0.09 2.24 6.91 -2.39 -0.02 2.22 16 35 H 0.08 1.94 8.14 -2.38 -0.02 1.93 16 36 H 0.12 1.97 8.11 -2.38 -0.02 1.95 16 37 H 0.10 1.98 8.12 -2.38 -0.02 1.96 16 38 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.11 2.46 8.05 -2.38 -0.02 2.44 16 40 H 0.09 2.16 7.84 -2.39 -0.02 2.14 16 41 H 0.07 2.34 5.55 -2.39 -0.01 2.32 16 42 H 0.08 1.60 6.68 -2.39 -0.02 1.58 16 43 H 0.04 1.24 6.74 -2.39 -0.02 1.22 16 44 H 0.06 1.60 6.89 -2.39 -0.02 1.58 16 45 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 46 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.38 18.61 5.99 -92.71 -0.56 18.06 16 48 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -65.70 376.77 4.97 -60.73 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 0.42 Total: 30.64 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 5.07 Total: 1.93 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -4.04 Total: -111.72 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.05 Total: -19.14 kcal Atomic # 9 Polarization: -11.47 SS G_CDS: 1.54 Total: -9.93 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -65.70 4.97 -60.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181694279.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.964 kcal (2) G-P(sol) polarization free energy of solvation -65.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds