Wall clock time and date at job start Tue Mar 31 2020 17:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.30813 * 2 1 4 4 C 1.54392 * 110.43473 * 237.76931 * 2 1 3 5 5 N 1.48146 * 104.61597 * 264.94953 * 4 2 1 6 6 C 1.34775 * 127.83759 * 140.43424 * 5 4 2 7 7 O 1.21277 * 119.99942 * 180.02562 * 6 5 4 8 8 C 1.50701 * 119.99783 * 0.02562 * 6 5 4 9 9 C 1.53002 * 109.46888 * 180.02562 * 8 6 5 10 10 C 1.53781 * 113.61646 * 272.49894 * 9 8 6 11 11 C 1.53779 * 87.08202 * 220.02130 * 10 9 8 12 12 F 1.39902 * 113.61073 * 270.88143 * 11 10 9 13 13 F 1.39902 * 113.61310 * 139.98321 * 11 10 9 14 14 C 1.53775 * 87.08296 * 25.43045 * 11 10 9 15 15 C 1.48143 * 104.32317 * 320.41158 * 5 4 2 16 16 C 1.54286 * 110.34485 * 122.17639 * 2 1 3 17 17 C 1.52994 * 110.33962 * 0.02562 * 16 2 1 18 18 C 1.53003 * 110.34252 * 237.84514 * 16 2 1 19 19 N 1.46499 * 109.46708 * 179.97438 * 18 16 2 20 20 C 1.36935 * 119.99926 * 180.02562 * 19 18 16 21 21 H 1.08005 * 119.99877 * 359.97438 * 20 19 18 22 22 C 1.38811 * 120.00369 * 179.73019 * 20 19 18 23 23 N 1.31617 * 119.99773 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47050 * 59.99408 * 24 22 20 26 26 H 1.48496 * 109.47289 * 179.97438 * 24 22 20 27 27 H 1.48508 * 109.46855 * 299.99389 * 24 22 20 28 28 H 1.09002 * 109.46877 * 297.82327 * 1 2 3 29 29 H 1.08998 * 109.46989 * 57.81817 * 1 2 3 30 30 H 1.08995 * 109.46424 * 177.82312 * 1 2 3 31 31 H 1.09002 * 110.40252 * 23.73320 * 4 2 1 32 32 H 1.09001 * 110.40637 * 146.16183 * 4 2 1 33 33 H 1.08994 * 109.47277 * 299.99988 * 8 6 5 34 34 H 1.08998 * 109.47142 * 60.00713 * 8 6 5 35 35 H 1.09003 * 112.85228 * 43.80665 * 9 8 6 36 36 H 1.09003 * 113.61492 * 334.56629 * 10 9 8 37 37 H 1.08995 * 113.61836 * 105.46483 * 10 9 8 38 38 H 1.08996 * 113.61838 * 220.01902 * 14 11 10 39 39 H 1.08999 * 113.69148 * 89.12625 * 14 11 10 40 40 H 1.09005 * 110.40602 * 280.80089 * 15 5 4 41 41 H 1.09001 * 110.40360 * 158.37145 * 15 5 4 42 42 H 1.08993 * 109.47253 * 298.52082 * 17 16 2 43 43 H 1.08991 * 109.47522 * 58.52578 * 17 16 2 44 44 H 1.09003 * 109.46954 * 178.52790 * 17 16 2 45 45 H 1.08998 * 109.46692 * 60.00307 * 18 16 2 46 46 H 1.08994 * 109.47584 * 300.00171 * 18 16 2 47 47 H 0.97005 * 120.00261 * 0.02562 * 19 18 16 48 48 H 0.97004 * 120.00382 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0690 -0.7716 -1.2238 5 7 2.3178 -2.1428 -0.7213 6 6 2.0839 -3.3101 -1.3533 7 8 2.3432 -4.3597 -0.8038 8 6 1.5003 -3.3109 -2.7427 9 6 1.3357 -4.7532 -3.2258 10 6 2.5897 -5.3200 -3.9121 11 6 1.6403 -5.9824 -4.9244 12 9 1.2143 -7.2586 -4.5409 13 9 2.1066 -5.9372 -6.2426 14 6 0.6330 -4.8700 -4.5887 15 6 2.8825 -1.9400 0.6332 16 6 2.0664 -0.7704 1.2244 17 6 0.9062 -1.3020 2.0683 18 6 2.9672 0.1334 2.0686 19 7 3.4648 -0.6160 3.2249 20 6 4.2951 -0.0087 4.1287 21 1 4.5834 1.0227 3.9889 22 6 4.7622 -0.7171 5.2273 23 7 4.4065 -1.9724 5.4005 24 14 5.8942 0.1116 6.4607 25 1 5.2039 1.2836 7.0565 26 1 6.2477 -0.8522 7.5335 27 1 7.1306 0.5624 5.7725 28 1 -0.3633 0.4797 0.9089 29 1 -0.3633 0.5473 -0.8698 30 1 -0.3632 -1.0269 -0.0390 31 1 1.3253 -0.7878 -2.0206 32 1 2.9969 -0.3223 -1.5779 33 1 0.5274 -2.8196 -2.7284 34 1 2.1680 -2.7753 -3.4175 35 1 0.9195 -5.4105 -2.4623 36 1 3.2308 -4.5552 -4.3506 37 1 3.1393 -6.0329 -3.2976 38 1 -0.3970 -5.2197 -4.5204 39 1 0.7379 -3.9817 -5.2115 40 1 3.9375 -1.6732 0.5691 41 1 2.7526 -2.8378 1.2374 42 1 0.3105 -0.4661 2.4346 43 1 0.2813 -1.9534 1.4575 44 1 1.3005 -1.8654 2.9141 45 1 2.3962 0.9955 2.4133 46 1 3.8092 0.4729 1.4655 47 1 3.2062 -1.5425 3.3503 48 1 4.7326 -2.4674 6.1684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181941776.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:33 Heat of formation + Delta-G solvation = -105.797006 kcal Electronic energy + Delta-G solvation = -29151.165156 eV Core-core repulsion = 24877.609246 eV Total energy + Delta-G solvation = -4273.555909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.06388 -47.40424 -40.46193 -39.01370 -37.56206 -34.83255 -33.15640 -31.54935 -30.65301 -29.52394 -27.33680 -26.60659 -25.69895 -25.45506 -23.57387 -22.95320 -21.20812 -20.30545 -19.34605 -18.53709 -17.62728 -17.38915 -16.89038 -16.76486 -16.43634 -16.08936 -15.67174 -14.93725 -14.52661 -14.33095 -14.27218 -14.17660 -13.95536 -13.72394 -13.57410 -13.43729 -13.13647 -12.99441 -12.89436 -12.80963 -12.48128 -12.22328 -12.00350 -11.65310 -11.52427 -11.46965 -11.30368 -11.27497 -11.18155 -11.00548 -10.80065 -10.72737 -10.45173 -10.34389 -10.22795 -9.92167 -9.76242 -9.61294 -8.87799 -8.60392 -6.92327 -5.75850 -3.04909 2.65137 2.93870 3.18342 3.44003 3.47965 3.48414 3.49777 3.92238 4.00442 4.03193 4.43596 4.55123 4.59973 4.77521 4.81633 4.88629 5.01171 5.03540 5.10915 5.15662 5.28889 5.33652 5.39471 5.42170 5.44286 5.47712 5.49918 5.55904 5.62533 5.78329 5.87702 5.93281 5.96750 6.05564 6.08509 6.15009 6.20815 6.25142 6.42611 6.57234 6.66761 6.76172 6.85482 7.63579 7.69187 8.19556 8.42674 9.53897 10.11248 10.45565 11.46720 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.018881 B = 0.002439 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.629737 B =11477.925407 C =12346.254839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.088 0.912 4 C 0.104 3.896 5 N -0.621 5.621 6 C 0.529 3.471 7 O -0.538 6.538 8 C -0.124 4.124 9 C -0.088 4.088 10 C -0.159 4.159 11 C 0.252 3.748 12 F -0.179 7.179 13 F -0.194 7.194 14 C -0.162 4.162 15 C 0.119 3.881 16 C -0.075 4.075 17 C -0.131 4.131 18 C 0.168 3.832 19 N -0.730 5.730 20 C -0.241 4.241 21 H 0.069 0.931 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.056 0.944 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.022 0.978 46 H 0.020 0.980 47 H 0.385 0.615 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.259 -0.109 -22.777 24.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.106 0.894 4 C -0.019 4.019 5 N -0.355 5.355 6 C 0.318 3.682 7 O -0.415 6.415 8 C -0.164 4.164 9 C -0.107 4.107 10 C -0.197 4.197 11 C 0.216 3.784 12 F -0.160 7.160 13 F -0.175 7.175 14 C -0.200 4.200 15 C -0.003 4.003 16 C -0.076 4.076 17 C -0.188 4.188 18 C 0.040 3.960 19 N -0.375 5.375 20 C -0.373 4.373 21 H 0.087 0.913 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.131 0.869 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.040 0.960 46 H 0.037 0.963 47 H 0.220 0.780 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.032 -0.716 -22.472 24.620 hybrid contribution 0.646 0.085 0.667 0.932 sum -9.386 -0.631 -21.806 23.748 Atomic orbital electron populations 1.21907 0.94555 1.01791 1.01631 1.22144 0.96235 0.99558 0.93882 0.89406 1.22504 1.00459 0.82060 0.96886 1.49058 1.62979 1.05266 1.18195 1.20115 0.78416 0.82259 0.87406 1.90740 1.52618 1.30407 1.67724 1.21573 1.02967 0.97377 0.94454 1.22178 0.95884 0.96791 0.95824 1.24177 0.97969 1.01329 0.96207 1.22101 0.97151 0.80833 0.78353 1.93026 1.90623 1.41753 1.90611 1.93005 1.89534 1.96470 1.38441 1.24182 0.99956 0.98052 0.97771 1.22477 0.97182 0.98974 0.81634 1.21700 0.96232 0.95158 0.94490 1.21850 0.96820 1.00667 0.99504 1.20709 0.93634 0.92979 0.88679 1.42396 1.57444 1.12914 1.24790 1.19154 1.20732 0.95764 1.01619 0.91308 1.24734 1.01103 0.96113 0.98897 1.69645 1.48905 1.08619 1.30853 0.86281 0.80714 0.78168 0.81075 1.21325 1.21719 1.21310 0.91819 0.93194 0.92471 0.90553 0.90936 0.88280 0.88576 0.86663 0.87157 0.88355 0.88676 0.86907 0.90523 0.89698 0.92475 0.93432 0.91498 0.96017 0.96258 0.78033 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 7.93 37.16 0.29 -1.04 16 2 C -0.10 -1.06 3.30 -89.22 -0.29 -1.36 16 3 H 0.09 0.90 7.71 -51.93 -0.40 0.50 16 4 C 0.10 0.98 6.47 -2.41 -0.02 0.96 16 5 N -0.62 -7.88 3.32 -169.30 -0.56 -8.44 16 6 C 0.53 6.83 7.91 -10.99 -0.09 6.74 16 7 O -0.54 -9.30 16.02 5.56 0.09 -9.21 16 8 C -0.12 -0.97 4.52 -27.88 -0.13 -1.09 16 9 C -0.09 -0.73 3.13 -89.81 -0.28 -1.01 16 10 C -0.16 -1.37 7.42 -25.92 -0.19 -1.57 16 11 C 0.25 2.29 3.28 -25.92 -0.08 2.20 16 12 F -0.18 -2.00 17.38 2.25 0.04 -1.96 16 13 F -0.19 -1.97 17.41 2.25 0.04 -1.93 16 14 C -0.16 -1.04 7.43 -25.92 -0.19 -1.23 16 15 C 0.12 1.91 5.71 -2.41 -0.01 1.89 16 16 C -0.07 -1.11 0.73 -153.11 -0.11 -1.22 16 17 C -0.13 -2.03 7.07 37.15 0.26 -1.77 16 18 C 0.17 3.15 4.87 -4.04 -0.02 3.13 16 19 N -0.73 -17.79 5.13 -59.91 -0.31 -18.10 16 20 C -0.24 -6.62 9.99 -15.06 -0.15 -6.78 16 21 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -28.11 13.06 55.49 0.72 -27.38 16 24 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H 0.06 0.64 6.84 -51.93 -0.36 0.29 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.57 6.76 -51.93 -0.35 0.22 16 31 H 0.08 0.51 7.03 -51.93 -0.36 0.14 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.58 7.95 -51.93 -0.41 0.17 16 34 H 0.10 0.56 7.84 -51.93 -0.41 0.15 16 35 H 0.12 1.18 7.68 -51.93 -0.40 0.78 16 36 H 0.11 0.78 7.90 -51.93 -0.41 0.37 16 37 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.11 0.50 8.10 -51.93 -0.42 0.08 16 40 H 0.08 1.33 7.83 -51.93 -0.41 0.92 16 41 H 0.08 1.60 7.60 -51.93 -0.39 1.21 16 42 H 0.06 0.84 6.89 -51.93 -0.36 0.48 16 43 H 0.05 0.67 6.71 -51.93 -0.35 0.33 16 44 H 0.07 1.25 6.78 -51.93 -0.35 0.89 16 45 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.02 0.37 8.10 -51.93 -0.42 -0.05 16 47 H 0.38 9.96 6.19 -40.82 -0.25 9.71 16 48 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 383.19 15.07 5.77 5.77 Total: -1.00 -32.79 383.19 -8.05 -40.84 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -7.71 Total: 5.70 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -1.11 Total: -2.58 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.14 Total: -53.92 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.08 Total: -3.89 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.79 -8.05 -40.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181941776.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.958 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds