Wall clock time and date at job start Tue Mar 31 2020 17:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.30813 * 2 1 4 4 C 1.54392 * 110.43473 * 237.76931 * 2 1 3 5 5 N 1.48146 * 104.61597 * 264.94953 * 4 2 1 6 6 C 1.34775 * 127.83759 * 140.43424 * 5 4 2 7 7 O 1.21277 * 119.99942 * 180.02562 * 6 5 4 8 8 C 1.50701 * 119.99783 * 0.02562 * 6 5 4 9 9 C 1.53002 * 109.46888 * 180.02562 * 8 6 5 10 10 C 1.53781 * 113.61646 * 272.49894 * 9 8 6 11 11 C 1.53779 * 87.08202 * 220.02130 * 10 9 8 12 12 F 1.39902 * 113.61073 * 270.88143 * 11 10 9 13 13 F 1.39902 * 113.61310 * 139.98321 * 11 10 9 14 14 C 1.53775 * 87.08296 * 25.43045 * 11 10 9 15 15 C 1.48143 * 104.32317 * 320.41158 * 5 4 2 16 16 C 1.54286 * 110.34485 * 122.17639 * 2 1 3 17 17 C 1.52994 * 110.33962 * 0.02562 * 16 2 1 18 18 C 1.53003 * 110.34252 * 237.84514 * 16 2 1 19 19 N 1.46499 * 109.46708 * 179.97438 * 18 16 2 20 20 C 1.36935 * 119.99926 * 180.02562 * 19 18 16 21 21 H 1.08005 * 119.99877 * 359.97438 * 20 19 18 22 22 C 1.38811 * 120.00369 * 179.73019 * 20 19 18 23 23 N 1.31617 * 119.99773 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47050 * 59.99408 * 24 22 20 26 26 H 1.48496 * 109.47289 * 179.97438 * 24 22 20 27 27 H 1.48508 * 109.46855 * 299.99389 * 24 22 20 28 28 H 1.09002 * 109.46877 * 297.82327 * 1 2 3 29 29 H 1.08998 * 109.46989 * 57.81817 * 1 2 3 30 30 H 1.08995 * 109.46424 * 177.82312 * 1 2 3 31 31 H 1.09002 * 110.40252 * 23.73320 * 4 2 1 32 32 H 1.09001 * 110.40637 * 146.16183 * 4 2 1 33 33 H 1.08994 * 109.47277 * 299.99988 * 8 6 5 34 34 H 1.08998 * 109.47142 * 60.00713 * 8 6 5 35 35 H 1.09003 * 112.85228 * 43.80665 * 9 8 6 36 36 H 1.09003 * 113.61492 * 334.56629 * 10 9 8 37 37 H 1.08995 * 113.61836 * 105.46483 * 10 9 8 38 38 H 1.08996 * 113.61838 * 220.01902 * 14 11 10 39 39 H 1.08999 * 113.69148 * 89.12625 * 14 11 10 40 40 H 1.09005 * 110.40602 * 280.80089 * 15 5 4 41 41 H 1.09001 * 110.40360 * 158.37145 * 15 5 4 42 42 H 1.08993 * 109.47253 * 298.52082 * 17 16 2 43 43 H 1.08991 * 109.47522 * 58.52578 * 17 16 2 44 44 H 1.09003 * 109.46954 * 178.52790 * 17 16 2 45 45 H 1.08998 * 109.46692 * 60.00307 * 18 16 2 46 46 H 1.08994 * 109.47584 * 300.00171 * 18 16 2 47 47 H 0.97005 * 120.00261 * 0.02562 * 19 18 16 48 48 H 0.97004 * 120.00382 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0690 -0.7716 -1.2238 5 7 2.3178 -2.1428 -0.7213 6 6 2.0839 -3.3101 -1.3533 7 8 2.3432 -4.3597 -0.8038 8 6 1.5003 -3.3109 -2.7427 9 6 1.3357 -4.7532 -3.2258 10 6 2.5897 -5.3200 -3.9121 11 6 1.6403 -5.9824 -4.9244 12 9 1.2143 -7.2586 -4.5409 13 9 2.1066 -5.9372 -6.2426 14 6 0.6330 -4.8700 -4.5887 15 6 2.8825 -1.9400 0.6332 16 6 2.0664 -0.7704 1.2244 17 6 0.9062 -1.3020 2.0683 18 6 2.9672 0.1334 2.0686 19 7 3.4648 -0.6160 3.2249 20 6 4.2951 -0.0087 4.1287 21 1 4.5834 1.0227 3.9889 22 6 4.7622 -0.7171 5.2273 23 7 4.4065 -1.9724 5.4005 24 14 5.8942 0.1116 6.4607 25 1 5.2039 1.2836 7.0565 26 1 6.2477 -0.8522 7.5335 27 1 7.1306 0.5624 5.7725 28 1 -0.3633 0.4797 0.9089 29 1 -0.3633 0.5473 -0.8698 30 1 -0.3632 -1.0269 -0.0390 31 1 1.3253 -0.7878 -2.0206 32 1 2.9969 -0.3223 -1.5779 33 1 0.5274 -2.8196 -2.7284 34 1 2.1680 -2.7753 -3.4175 35 1 0.9195 -5.4105 -2.4623 36 1 3.2308 -4.5552 -4.3506 37 1 3.1393 -6.0329 -3.2976 38 1 -0.3970 -5.2197 -4.5204 39 1 0.7379 -3.9817 -5.2115 40 1 3.9375 -1.6732 0.5691 41 1 2.7526 -2.8378 1.2374 42 1 0.3105 -0.4661 2.4346 43 1 0.2813 -1.9534 1.4575 44 1 1.3005 -1.8654 2.9141 45 1 2.3962 0.9955 2.4133 46 1 3.8092 0.4729 1.4655 47 1 3.2062 -1.5425 3.3503 48 1 4.7326 -2.4674 6.1684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181941776.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:32 Heat of formation + Delta-G solvation = -126.012532 kcal Electronic energy + Delta-G solvation = -29152.041767 eV Core-core repulsion = 24877.609246 eV Total energy + Delta-G solvation = -4274.432520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.80905 -48.16406 -41.49033 -39.92926 -38.45825 -36.47405 -34.54649 -33.03344 -31.63732 -30.86272 -28.45914 -27.20224 -27.08554 -26.57826 -25.10270 -23.97271 -22.39718 -20.97972 -20.29950 -19.81082 -19.04566 -18.35466 -17.93477 -17.50807 -17.34303 -17.08624 -16.64043 -16.48185 -15.80616 -15.55351 -15.43704 -15.06898 -15.02741 -14.77366 -14.67971 -14.47606 -14.33473 -14.21725 -13.79750 -13.57295 -13.42344 -13.36845 -13.06741 -13.00700 -12.79905 -12.58969 -12.42545 -12.39714 -12.27368 -12.12844 -12.08042 -11.94253 -11.83829 -11.44963 -11.37023 -11.33191 -11.17747 -10.92930 -10.79382 -9.67370 -8.97345 -7.93587 -5.22023 1.46384 1.49588 1.55726 1.68891 1.98438 2.54399 2.56523 2.86221 3.24424 3.36222 3.39173 3.40044 3.51795 3.62790 3.84305 3.87821 4.16865 4.23065 4.31452 4.32557 4.38560 4.41320 4.51189 4.55635 4.60170 4.66634 4.69685 4.75404 4.77643 4.82320 4.85346 4.86967 4.90659 4.96702 5.05325 5.10019 5.13497 5.16702 5.29897 5.32160 5.42573 5.48213 5.52619 5.64521 6.28014 6.68115 7.21436 7.34440 8.12521 8.33751 9.29937 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.018881 B = 0.002439 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.629737 B =11477.925407 C =12346.254839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 H 0.102 0.898 4 C 0.104 3.896 5 N -0.619 5.619 6 C 0.520 3.480 7 O -0.596 6.596 8 C -0.110 4.110 9 C -0.091 4.091 10 C -0.163 4.163 11 C 0.235 3.765 12 F -0.198 7.198 13 F -0.200 7.200 14 C -0.136 4.136 15 C 0.123 3.877 16 C -0.067 4.067 17 C -0.122 4.122 18 C 0.166 3.834 19 N -0.744 5.744 20 C -0.241 4.241 21 H 0.079 0.921 22 C -0.079 4.079 23 N -0.973 5.973 24 Si 0.973 3.027 25 H -0.276 1.276 26 H -0.299 1.299 27 H -0.277 1.277 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.086 0.914 36 H 0.132 0.868 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.146 0.854 40 H 0.056 0.944 41 H 0.040 0.960 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.022 0.978 45 H 0.028 0.972 46 H 0.025 0.975 47 H 0.373 0.627 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.619 3.044 -25.916 28.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 H 0.120 0.880 4 C -0.017 4.017 5 N -0.352 5.352 6 C 0.311 3.689 7 O -0.477 6.477 8 C -0.149 4.149 9 C -0.110 4.110 10 C -0.201 4.201 11 C 0.199 3.801 12 F -0.179 7.179 13 F -0.181 7.181 14 C -0.173 4.173 15 C 0.000 4.000 16 C -0.069 4.069 17 C -0.179 4.179 18 C 0.039 3.961 19 N -0.387 5.387 20 C -0.373 4.373 21 H 0.096 0.904 22 C -0.271 4.271 23 N -0.624 5.624 24 Si 0.802 3.198 25 H -0.202 1.202 26 H -0.226 1.226 27 H -0.204 1.204 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.140 0.860 32 H 0.104 0.896 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.104 0.896 36 H 0.150 0.850 37 H 0.090 0.910 38 H 0.124 0.876 39 H 0.164 0.836 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.042 0.958 45 H 0.046 0.954 46 H 0.043 0.957 47 H 0.205 0.795 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.412 2.508 -25.666 28.200 hybrid contribution 1.089 -0.903 1.615 2.147 sum -10.323 1.605 -24.050 26.221 Atomic orbital electron populations 1.21883 0.92975 1.01869 1.02802 1.22170 0.97459 0.99694 0.91822 0.87994 1.22793 1.02483 0.79336 0.97088 1.49149 1.62343 1.07067 1.16646 1.21225 0.77417 0.81218 0.89042 1.90725 1.54947 1.32568 1.69437 1.21646 1.04967 0.97428 0.90817 1.22071 0.95853 0.96861 0.96231 1.24278 0.98373 1.01425 0.96021 1.22533 0.98730 0.80819 0.77974 1.92986 1.90844 1.43314 1.90793 1.92987 1.89795 1.96459 1.38882 1.24144 0.99413 0.97730 0.96017 1.22116 0.96685 0.97518 0.83707 1.21579 0.95017 0.94584 0.95674 1.21751 0.97175 1.00639 0.98318 1.20910 0.94375 0.93339 0.87437 1.42647 1.57237 1.12773 1.26077 1.19624 1.19924 0.96082 1.01681 0.90358 1.25580 1.03443 0.96798 1.01273 1.69831 1.50844 1.10272 1.31418 0.85213 0.79001 0.77106 0.78456 1.20197 1.22592 1.20355 0.92782 0.89793 0.93088 0.86040 0.89550 0.84801 0.85137 0.89557 0.85033 0.90979 0.87613 0.83573 0.92524 0.94113 0.91499 0.92138 0.95850 0.95423 0.95668 0.79488 0.94202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 7.93 71.98 0.57 -1.44 16 2 C -0.09 -1.66 3.30 -9.88 -0.03 -1.70 16 3 H 0.10 1.63 7.71 -2.39 -0.02 1.62 16 4 C 0.10 1.48 6.47 86.54 0.56 2.04 16 5 N -0.62 -14.76 3.32 -807.94 -2.68 -17.44 16 6 C 0.52 12.82 7.91 87.66 0.69 13.51 16 7 O -0.60 -21.60 16.02 -3.02 -0.05 -21.65 16 8 C -0.11 -1.27 4.52 29.85 0.13 -1.13 16 9 C -0.09 -1.34 3.13 -10.27 -0.03 -1.37 16 10 C -0.16 -2.67 7.42 31.12 0.23 -2.44 16 11 C 0.24 3.98 3.28 31.12 0.10 4.08 16 12 F -0.20 -4.48 17.38 44.97 0.78 -3.70 16 13 F -0.20 -3.75 17.41 44.97 0.78 -2.96 16 14 C -0.14 -1.26 7.43 31.12 0.23 -1.02 16 15 C 0.12 4.10 5.71 86.54 0.49 4.59 16 16 C -0.07 -1.98 0.73 -51.27 -0.04 -2.02 16 17 C -0.12 -3.84 7.07 71.98 0.51 -3.33 16 18 C 0.17 6.20 4.87 86.38 0.42 6.62 16 19 N -0.74 -37.48 5.13 -343.46 -1.76 -39.24 16 20 C -0.24 -13.43 9.99 84.03 0.84 -12.59 16 21 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 22 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 23 N -0.97 -61.17 13.06 21.65 0.28 -60.89 16 24 Si 0.97 46.65 29.55 68.60 2.03 48.67 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 26 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 27 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 28 H 0.05 0.91 6.84 -2.39 -0.02 0.89 16 29 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.82 6.76 -2.39 -0.02 0.81 16 31 H 0.12 0.73 7.03 -2.39 -0.02 0.71 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.13 0.72 7.95 -2.39 -0.02 0.70 16 34 H 0.13 0.72 7.84 -2.39 -0.02 0.70 16 35 H 0.09 1.80 7.68 -2.39 -0.02 1.78 16 36 H 0.13 1.53 7.90 -2.39 -0.02 1.52 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.15 0.44 8.10 -2.39 -0.02 0.42 16 40 H 0.06 2.06 7.83 -2.38 -0.02 2.05 16 41 H 0.04 1.69 7.60 -2.39 -0.02 1.67 16 42 H 0.07 1.94 6.89 -2.39 -0.02 1.93 16 43 H 0.06 1.72 6.71 -2.39 -0.02 1.71 16 44 H 0.02 0.92 6.78 -2.39 -0.02 0.90 16 45 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.03 0.93 8.10 -2.39 -0.02 0.91 16 47 H 0.37 20.52 6.19 -92.70 -0.57 19.94 16 48 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -78.39 383.19 4.93 -73.47 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.39 Total: 24.08 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 5.15 Total: -0.33 kcal Atomic # 7 Polarization: -113.41 SS G_CDS: -4.16 Total: -117.57 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.05 Total: -21.65 kcal Atomic # 9 Polarization: -8.23 SS G_CDS: 1.56 Total: -6.67 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.67 kcal Total: -78.39 4.93 -73.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181941776.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.544 kcal (2) G-P(sol) polarization free energy of solvation -78.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds