Wall clock time and date at job start Tue Mar 31 2020 17:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.30601 * 2 1 4 4 C 1.54389 * 110.34277 * 237.82980 * 2 1 3 5 5 N 1.48147 * 104.61948 * 217.26172 * 4 2 1 6 6 C 1.34773 * 127.83908 * 219.58517 * 5 4 2 7 7 O 1.21279 * 120.00072 * 174.96829 * 6 5 4 8 8 C 1.50707 * 120.00117 * 354.96949 * 6 5 4 9 9 C 1.52998 * 115.55039 * 78.34863 * 8 6 5 10 10 C 1.53003 * 109.46907 * 40.45396 * 9 8 6 11 11 F 1.39900 * 109.47338 * 280.45517 * 9 8 6 12 12 F 1.39899 * 109.47143 * 160.45337 * 9 8 6 13 13 C 1.52992 * 117.51843 * 224.05437 * 8 6 5 14 14 C 1.52997 * 60.00429 * 107.47665 * 13 8 6 15 15 C 1.48147 * 104.32313 * 39.84677 * 5 4 2 16 16 C 1.54286 * 110.34366 * 122.29325 * 2 1 3 17 17 C 1.53000 * 110.34213 * 0.02562 * 16 2 1 18 18 C 1.53001 * 110.34255 * 237.84428 * 16 2 1 19 19 N 1.46499 * 109.47048 * 179.97438 * 18 16 2 20 20 C 1.36929 * 119.99781 * 180.02562 * 19 18 16 21 21 H 1.08006 * 120.00573 * 0.02562 * 20 19 18 22 22 C 1.38819 * 119.99837 * 179.97438 * 20 19 18 23 23 N 1.31615 * 119.99813 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00080 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46869 * 60.00294 * 24 22 20 26 26 H 1.48492 * 109.47469 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47466 * 300.00804 * 24 22 20 28 28 H 1.09003 * 109.46876 * 180.71866 * 1 2 3 29 29 H 1.09004 * 109.46966 * 300.71443 * 1 2 3 30 30 H 1.09001 * 109.47172 * 60.71410 * 1 2 3 31 31 H 1.09005 * 110.40753 * 98.47369 * 4 2 1 32 32 H 1.09005 * 110.50748 * 336.09636 * 4 2 1 33 33 H 1.08989 * 109.47375 * 294.46410 * 10 9 8 34 34 H 1.09000 * 109.46778 * 54.47056 * 10 9 8 35 35 H 1.09005 * 109.46725 * 174.46173 * 10 9 8 36 36 H 1.09004 * 117.50108 * 214.97148 * 13 8 6 37 37 H 1.09000 * 117.50454 * 359.97438 * 13 8 6 38 38 H 1.08992 * 117.50063 * 252.51103 * 14 13 8 39 39 H 1.09006 * 117.51607 * 107.47547 * 14 13 8 40 40 H 1.09001 * 110.40549 * 78.93579 * 15 5 4 41 41 H 1.08994 * 110.40498 * 201.37047 * 15 5 4 42 42 H 1.08995 * 109.47395 * 59.99873 * 17 16 2 43 43 H 1.09000 * 109.46818 * 180.02562 * 17 16 2 44 44 H 1.09004 * 109.46932 * 299.99540 * 17 16 2 45 45 H 1.08998 * 109.47385 * 300.00157 * 18 16 2 46 46 H 1.09004 * 109.46539 * 60.00076 * 18 16 2 47 47 H 0.97001 * 120.00249 * 0.02562 * 19 18 16 48 48 H 0.97004 * 119.99460 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0667 -0.7708 -1.2253 5 7 3.2664 -1.4809 -0.7243 6 6 4.4424 -1.6650 -1.3564 7 8 5.3669 -2.1931 -0.7757 8 6 4.6087 -1.2144 -2.7849 9 6 4.8393 0.2853 -2.9812 10 6 5.7852 0.8022 -1.8953 11 9 3.6170 0.9604 -2.8950 12 9 5.4077 0.5089 -4.2398 13 6 5.3133 -2.1698 -3.7500 14 6 3.8027 -1.9515 -3.8564 15 6 2.8780 -1.9485 0.6267 16 6 2.0664 -0.7729 1.2229 17 6 0.9062 -1.3063 2.0657 18 6 2.9672 0.1292 2.0689 19 7 3.4648 -0.6226 3.2237 20 6 4.2950 -0.0170 4.1286 21 1 4.5827 1.0149 3.9914 22 6 4.7662 -0.7292 5.2231 23 7 4.4152 -1.9866 5.3906 24 14 5.8994 0.0966 6.4573 25 1 5.2079 1.2645 7.0600 26 1 6.2585 -0.8713 7.5246 27 1 7.1331 0.5533 5.7684 28 1 -0.3633 -1.0276 0.0129 29 1 -0.3633 0.5249 0.8835 30 1 -0.3633 0.5027 -0.8963 31 1 2.3400 -0.0773 -2.0207 32 1 1.3243 -1.4843 -1.5828 33 1 5.3016 0.7183 -0.9222 34 1 6.7003 0.2102 -1.8987 35 1 6.0275 1.8467 -2.0918 36 1 5.9413 -1.7300 -4.5248 37 1 5.6572 -3.1244 -3.3518 38 1 3.1526 -2.7624 -3.5283 39 1 3.4365 -1.3678 -4.7011 40 1 2.2594 -2.8432 0.5560 41 1 3.7641 -2.1446 1.2303 42 1 0.2961 -1.9771 1.4609 43 1 1.3007 -1.8487 2.9249 44 1 0.2954 -0.4725 2.4120 45 1 3.8092 0.4698 1.4664 46 1 2.3961 0.9907 2.4153 47 1 3.2062 -1.5493 3.3472 48 1 4.7447 -2.4843 6.1553 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182637574.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:24 Heat of formation + Delta-G solvation = -89.262733 kcal Electronic energy + Delta-G solvation = -31054.133377 eV Core-core repulsion = 26781.294448 eV Total energy + Delta-G solvation = -4272.838929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.30902 -47.29559 -40.46724 -38.80481 -36.53968 -34.72932 -33.21639 -31.57951 -31.49862 -29.59870 -27.29186 -26.10943 -25.56664 -24.64448 -23.38787 -22.86994 -22.22877 -21.00258 -19.00958 -18.41077 -17.97911 -17.65901 -17.01311 -16.54837 -16.17736 -15.70101 -15.34525 -14.91677 -14.53774 -14.42892 -14.12910 -13.98063 -13.85891 -13.59655 -13.44469 -13.11589 -12.96414 -12.83584 -12.65631 -12.55462 -12.40374 -12.02846 -11.89189 -11.87736 -11.74413 -11.52059 -11.36405 -11.18148 -10.95214 -10.93036 -10.78013 -10.70457 -10.36460 -10.28978 -10.16815 -9.88339 -9.79077 -9.55459 -8.83307 -8.57638 -6.87334 -5.72335 -3.00195 2.42472 2.81041 3.14313 3.45367 3.47252 3.51633 3.52493 3.86206 4.00226 4.24948 4.29886 4.58834 4.65037 4.69230 4.72449 4.85360 4.95762 5.20801 5.24081 5.34172 5.36335 5.41985 5.50863 5.53310 5.53619 5.57765 5.61862 5.69173 5.73064 5.77893 5.83011 5.90728 5.96932 6.07518 6.12544 6.19355 6.25382 6.33584 6.45626 6.56184 6.71877 6.81685 6.90332 7.63457 7.73357 8.17528 8.46654 9.57970 10.15131 10.49922 11.50597 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.013251 B = 0.004060 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.483698 B = 6894.190540 C = 7799.173955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 H 0.081 0.919 4 C 0.086 3.914 5 N -0.610 5.610 6 C 0.574 3.426 7 O -0.518 6.518 8 C -0.214 4.214 9 C 0.336 3.664 10 C -0.194 4.194 11 F -0.188 7.188 12 F -0.193 7.193 13 C -0.124 4.124 14 C -0.146 4.146 15 C 0.113 3.887 16 C -0.075 4.075 17 C -0.134 4.134 18 C 0.170 3.830 19 N -0.728 5.728 20 C -0.238 4.238 21 H 0.068 0.932 22 C -0.012 4.012 23 N -0.933 5.933 24 Si 0.906 3.094 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.287 1.287 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.067 0.933 41 H 0.100 0.900 42 H 0.050 0.950 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.016 0.984 46 H 0.020 0.980 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.541 2.132 -21.239 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.100 0.900 4 C -0.037 4.037 5 N -0.342 5.342 6 C 0.360 3.640 7 O -0.393 6.393 8 C -0.218 4.218 9 C 0.300 3.700 10 C -0.252 4.252 11 F -0.169 7.169 12 F -0.174 7.174 13 C -0.161 4.161 14 C -0.183 4.183 15 C -0.009 4.009 16 C -0.076 4.076 17 C -0.191 4.191 18 C 0.042 3.958 19 N -0.373 5.373 20 C -0.369 4.369 21 H 0.086 0.914 22 C -0.208 4.208 23 N -0.582 5.582 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.086 0.914 41 H 0.118 0.882 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.033 0.967 46 H 0.038 0.962 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.838 1.959 -20.903 21.791 hybrid contribution 0.430 0.318 0.698 0.880 sum -5.408 2.277 -20.205 21.040 Atomic orbital electron populations 1.21884 0.94207 1.02077 1.01661 1.22111 0.96017 0.99738 0.93726 0.90031 1.22900 0.86677 0.96053 0.98059 1.48806 1.12477 1.54883 1.18056 1.18393 0.81284 0.79336 0.85012 1.90786 1.38751 1.43586 1.66193 1.22369 1.13124 0.93104 0.93241 1.20021 0.79728 0.88566 0.81723 1.22785 1.00538 1.03617 0.98212 1.92894 1.46067 1.81779 1.96171 1.92995 1.84929 1.95402 1.44100 1.23117 0.95239 0.99485 0.98294 1.23126 0.95171 1.01899 0.98074 1.22684 1.00405 0.95808 0.81987 1.21782 0.95966 0.95320 0.94572 1.21868 0.96612 1.00894 0.99742 1.20629 0.93653 0.92950 0.88539 1.42376 1.57408 1.12781 1.24764 1.19146 1.20603 0.95622 1.01567 0.91444 1.24698 1.01066 0.96059 0.98953 1.69638 1.49079 1.08361 1.31104 0.86290 0.80819 0.78143 0.81068 1.21346 1.21703 1.21346 0.92130 0.91795 0.93051 0.88572 0.91376 0.88805 0.88579 0.89561 0.86706 0.86876 0.87335 0.87260 0.91431 0.88203 0.93122 0.91301 0.92161 0.96665 0.96182 0.78110 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 7.93 37.16 0.29 -1.10 16 2 C -0.10 -1.19 3.30 -89.22 -0.29 -1.48 16 3 H 0.08 1.06 7.72 -51.93 -0.40 0.65 16 4 C 0.09 1.00 6.33 -2.41 -0.02 0.98 16 5 N -0.61 -8.95 3.31 -169.05 -0.56 -9.51 16 6 C 0.57 8.96 5.61 -10.98 -0.06 8.90 16 7 O -0.52 -10.30 17.23 5.56 0.10 -10.20 16 8 C -0.21 -2.56 1.19 -155.66 -0.18 -2.74 16 9 C 0.34 3.96 2.18 -26.73 -0.06 3.90 16 10 C -0.19 -2.36 8.75 37.16 0.33 -2.03 16 11 F -0.19 -2.25 14.04 2.25 0.03 -2.22 16 12 F -0.19 -2.20 15.66 2.25 0.04 -2.16 16 13 C -0.12 -1.23 9.53 -26.74 -0.25 -1.48 16 14 C -0.15 -1.32 9.76 -26.73 -0.26 -1.58 16 15 C 0.11 1.86 5.95 -2.19 -0.01 1.85 16 16 C -0.08 -1.17 0.73 -152.89 -0.11 -1.28 16 17 C -0.13 -1.97 7.10 37.16 0.26 -1.70 16 18 C 0.17 3.43 4.96 -4.04 -0.02 3.41 16 19 N -0.73 -18.32 4.80 -59.91 -0.29 -18.61 16 20 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 21 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -28.42 13.06 55.49 0.72 -27.69 16 24 Si 0.91 22.84 29.55 -169.99 -5.02 17.82 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H 0.06 0.57 6.61 -51.93 -0.34 0.22 16 29 H 0.06 0.66 6.98 -51.93 -0.36 0.29 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.10 1.07 4.34 -51.93 -0.23 0.85 16 32 H 0.07 0.68 7.87 -51.93 -0.41 0.27 16 33 H 0.09 1.33 7.46 -51.94 -0.39 0.95 16 34 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.11 0.98 7.30 -51.93 -0.38 0.60 16 37 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 1.01 7.84 -51.93 -0.41 0.60 16 41 H 0.10 2.09 6.94 -51.93 -0.36 1.73 16 42 H 0.05 0.62 6.67 -51.93 -0.35 0.27 16 43 H 0.07 1.22 6.74 -51.93 -0.35 0.87 16 44 H 0.06 0.85 6.88 -51.93 -0.36 0.49 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.38 10.06 5.99 -40.82 -0.24 9.82 16 48 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 378.42 15.07 5.70 5.70 Total: -1.00 -32.51 378.42 -7.42 -39.93 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -7.50 Total: 8.64 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -0.64 Total: -1.70 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.12 Total: -55.81 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.10 Total: -10.20 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.07 Total: -4.38 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.51 -7.42 -39.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182637574.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.332 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds