Wall clock time and date at job start Tue Mar 31 2020 17:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.30601 * 2 1 4 4 C 1.54389 * 110.34277 * 237.82980 * 2 1 3 5 5 N 1.48147 * 104.61948 * 217.26172 * 4 2 1 6 6 C 1.34773 * 127.83908 * 219.58517 * 5 4 2 7 7 O 1.21279 * 120.00072 * 174.96829 * 6 5 4 8 8 C 1.50707 * 120.00117 * 354.96949 * 6 5 4 9 9 C 1.52998 * 115.55039 * 78.34863 * 8 6 5 10 10 C 1.53003 * 109.46907 * 40.45396 * 9 8 6 11 11 F 1.39900 * 109.47338 * 280.45517 * 9 8 6 12 12 F 1.39899 * 109.47143 * 160.45337 * 9 8 6 13 13 C 1.52992 * 117.51843 * 224.05437 * 8 6 5 14 14 C 1.52997 * 60.00429 * 107.47665 * 13 8 6 15 15 C 1.48147 * 104.32313 * 39.84677 * 5 4 2 16 16 C 1.54286 * 110.34366 * 122.29325 * 2 1 3 17 17 C 1.53000 * 110.34213 * 0.02562 * 16 2 1 18 18 C 1.53001 * 110.34255 * 237.84428 * 16 2 1 19 19 N 1.46499 * 109.47048 * 179.97438 * 18 16 2 20 20 C 1.36929 * 119.99781 * 180.02562 * 19 18 16 21 21 H 1.08006 * 120.00573 * 0.02562 * 20 19 18 22 22 C 1.38819 * 119.99837 * 179.97438 * 20 19 18 23 23 N 1.31615 * 119.99813 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00080 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46869 * 60.00294 * 24 22 20 26 26 H 1.48492 * 109.47469 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47466 * 300.00804 * 24 22 20 28 28 H 1.09003 * 109.46876 * 180.71866 * 1 2 3 29 29 H 1.09004 * 109.46966 * 300.71443 * 1 2 3 30 30 H 1.09001 * 109.47172 * 60.71410 * 1 2 3 31 31 H 1.09005 * 110.40753 * 98.47369 * 4 2 1 32 32 H 1.09005 * 110.50748 * 336.09636 * 4 2 1 33 33 H 1.08989 * 109.47375 * 294.46410 * 10 9 8 34 34 H 1.09000 * 109.46778 * 54.47056 * 10 9 8 35 35 H 1.09005 * 109.46725 * 174.46173 * 10 9 8 36 36 H 1.09004 * 117.50108 * 214.97148 * 13 8 6 37 37 H 1.09000 * 117.50454 * 359.97438 * 13 8 6 38 38 H 1.08992 * 117.50063 * 252.51103 * 14 13 8 39 39 H 1.09006 * 117.51607 * 107.47547 * 14 13 8 40 40 H 1.09001 * 110.40549 * 78.93579 * 15 5 4 41 41 H 1.08994 * 110.40498 * 201.37047 * 15 5 4 42 42 H 1.08995 * 109.47395 * 59.99873 * 17 16 2 43 43 H 1.09000 * 109.46818 * 180.02562 * 17 16 2 44 44 H 1.09004 * 109.46932 * 299.99540 * 17 16 2 45 45 H 1.08998 * 109.47385 * 300.00157 * 18 16 2 46 46 H 1.09004 * 109.46539 * 60.00076 * 18 16 2 47 47 H 0.97001 * 120.00249 * 0.02562 * 19 18 16 48 48 H 0.97004 * 119.99460 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0667 -0.7708 -1.2253 5 7 3.2664 -1.4809 -0.7243 6 6 4.4424 -1.6650 -1.3564 7 8 5.3669 -2.1931 -0.7757 8 6 4.6087 -1.2144 -2.7849 9 6 4.8393 0.2853 -2.9812 10 6 5.7852 0.8022 -1.8953 11 9 3.6170 0.9604 -2.8950 12 9 5.4077 0.5089 -4.2398 13 6 5.3133 -2.1698 -3.7500 14 6 3.8027 -1.9515 -3.8564 15 6 2.8780 -1.9485 0.6267 16 6 2.0664 -0.7729 1.2229 17 6 0.9062 -1.3063 2.0657 18 6 2.9672 0.1292 2.0689 19 7 3.4648 -0.6226 3.2237 20 6 4.2950 -0.0170 4.1286 21 1 4.5827 1.0149 3.9914 22 6 4.7662 -0.7292 5.2231 23 7 4.4152 -1.9866 5.3906 24 14 5.8994 0.0966 6.4573 25 1 5.2079 1.2645 7.0600 26 1 6.2585 -0.8713 7.5246 27 1 7.1331 0.5533 5.7684 28 1 -0.3633 -1.0276 0.0129 29 1 -0.3633 0.5249 0.8835 30 1 -0.3633 0.5027 -0.8963 31 1 2.3400 -0.0773 -2.0207 32 1 1.3243 -1.4843 -1.5828 33 1 5.3016 0.7183 -0.9222 34 1 6.7003 0.2102 -1.8987 35 1 6.0275 1.8467 -2.0918 36 1 5.9413 -1.7300 -4.5248 37 1 5.6572 -3.1244 -3.3518 38 1 3.1526 -2.7624 -3.5283 39 1 3.4365 -1.3678 -4.7011 40 1 2.2594 -2.8432 0.5560 41 1 3.7641 -2.1446 1.2303 42 1 0.2961 -1.9771 1.4609 43 1 1.3007 -1.8487 2.9249 44 1 0.2954 -0.4725 2.4120 45 1 3.8092 0.4698 1.4664 46 1 2.3961 0.9907 2.4153 47 1 3.2062 -1.5493 3.3472 48 1 4.7447 -2.4843 6.1553 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182637574.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:23 Heat of formation + Delta-G solvation = -109.034043 kcal Electronic energy + Delta-G solvation = -31054.990725 eV Core-core repulsion = 26781.294448 eV Total energy + Delta-G solvation = -4273.696278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.23750 -48.21668 -41.64547 -39.97741 -37.57787 -36.50055 -34.64620 -33.16473 -32.52450 -31.19546 -28.44730 -27.67485 -26.70747 -25.73214 -25.13163 -23.70987 -23.32508 -22.28715 -20.09093 -19.74901 -19.39913 -18.60862 -18.59187 -17.49808 -17.36337 -16.80502 -16.69850 -16.44623 -16.02281 -15.50653 -15.32597 -15.15938 -15.11472 -14.89113 -14.62076 -14.42694 -14.37969 -14.13017 -13.79657 -13.66930 -13.42167 -13.20865 -13.01062 -12.95924 -12.88410 -12.78288 -12.63861 -12.61552 -12.55279 -12.29060 -12.11633 -11.96828 -11.77492 -11.63360 -11.51661 -11.23851 -11.17946 -11.00567 -10.95037 -9.79869 -9.00401 -7.96831 -5.24579 1.26992 1.42836 1.46468 1.52350 1.72492 2.28557 2.49830 2.53561 2.93184 3.02399 3.29607 3.36480 3.41968 3.57269 3.62584 3.75837 3.77064 3.86919 4.16835 4.23188 4.33771 4.35821 4.38531 4.47866 4.51987 4.55759 4.59934 4.67727 4.71893 4.79860 4.80728 4.83737 4.87383 4.88584 5.00285 5.01926 5.05964 5.13107 5.21124 5.30349 5.40155 5.45281 5.46331 5.66879 6.25372 6.47620 6.97437 7.32167 8.08176 8.32379 9.26464 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.013251 B = 0.004060 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.483698 B = 6894.190540 C = 7799.173955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 H 0.074 0.926 4 C 0.088 3.912 5 N -0.609 5.609 6 C 0.570 3.430 7 O -0.576 6.576 8 C -0.233 4.233 9 C 0.344 3.656 10 C -0.195 4.195 11 F -0.187 7.187 12 F -0.186 7.186 13 C -0.123 4.123 14 C -0.119 4.119 15 C 0.114 3.886 16 C -0.068 4.068 17 C -0.126 4.126 18 C 0.171 3.829 19 N -0.737 5.737 20 C -0.248 4.248 21 H 0.069 0.931 22 C -0.071 4.071 23 N -0.967 5.967 24 Si 0.971 3.029 25 H -0.274 1.274 26 H -0.293 1.293 27 H -0.284 1.284 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.131 0.869 37 H 0.104 0.896 38 H 0.117 0.883 39 H 0.133 0.867 40 H 0.087 0.913 41 H 0.045 0.955 42 H 0.085 0.915 43 H 0.031 0.969 44 H 0.068 0.932 45 H -0.004 1.004 46 H 0.023 0.977 47 H 0.376 0.624 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.469 3.088 -23.753 25.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.109 4.109 3 H 0.092 0.908 4 C -0.033 4.033 5 N -0.341 5.341 6 C 0.358 3.642 7 O -0.455 6.455 8 C -0.237 4.237 9 C 0.308 3.692 10 C -0.252 4.252 11 F -0.168 7.168 12 F -0.167 7.167 13 C -0.160 4.160 14 C -0.156 4.156 15 C -0.008 4.008 16 C -0.069 4.069 17 C -0.183 4.183 18 C 0.044 3.956 19 N -0.381 5.381 20 C -0.380 4.380 21 H 0.087 0.913 22 C -0.264 4.264 23 N -0.617 5.617 24 Si 0.799 3.201 25 H -0.200 1.200 26 H -0.219 1.219 27 H -0.210 1.210 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.124 0.876 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.149 0.851 37 H 0.122 0.878 38 H 0.136 0.864 39 H 0.151 0.849 40 H 0.106 0.894 41 H 0.064 0.936 42 H 0.103 0.897 43 H 0.051 0.949 44 H 0.087 0.913 45 H 0.014 0.986 46 H 0.041 0.959 47 H 0.210 0.790 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.812 2.964 -23.458 24.902 hybrid contribution 1.047 0.054 1.446 1.786 sum -6.766 3.018 -22.011 23.225 Atomic orbital electron populations 1.21865 0.91466 1.03208 1.02774 1.22098 0.98137 0.98769 0.91901 0.90763 1.23127 0.85807 0.96615 0.97753 1.48930 1.13348 1.54536 1.17259 1.19030 0.80577 0.78307 0.86298 1.90750 1.40591 1.46267 1.67877 1.22207 1.16598 0.93517 0.91351 1.19777 0.79502 0.88379 0.81587 1.22757 1.00347 1.04868 0.97268 1.92889 1.45931 1.81786 1.96179 1.93007 1.84851 1.95353 1.43512 1.23229 0.96618 0.98540 0.97597 1.23318 0.94512 1.01077 0.96662 1.22523 0.98498 0.97157 0.82646 1.21677 0.95271 0.94583 0.95355 1.21820 0.96388 1.01397 0.98735 1.20736 0.93745 0.93648 0.87432 1.42540 1.57140 1.12728 1.25670 1.19541 1.20562 0.95801 1.02063 0.91323 1.25510 1.03052 0.96763 1.01061 1.69799 1.50541 1.09730 1.31641 0.85259 0.78865 0.77367 0.78564 1.20016 1.21854 1.21010 0.90912 0.92100 0.90662 0.87559 0.88281 0.91521 0.89114 0.87719 0.85122 0.87798 0.86446 0.84920 0.89445 0.93643 0.89660 0.94946 0.91347 0.98568 0.95926 0.79039 0.93995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 7.93 71.98 0.57 -1.58 16 2 C -0.09 -2.01 3.30 -9.89 -0.03 -2.04 16 3 H 0.07 1.80 7.72 -2.39 -0.02 1.78 16 4 C 0.09 1.81 6.33 86.53 0.55 2.36 16 5 N -0.61 -17.72 3.31 -807.13 -2.67 -20.39 16 6 C 0.57 18.09 5.61 87.66 0.49 18.58 16 7 O -0.58 -24.31 17.23 -3.03 -0.05 -24.36 16 8 C -0.23 -5.26 1.19 -52.93 -0.06 -5.32 16 9 C 0.34 7.58 2.18 30.59 0.07 7.65 16 10 C -0.19 -4.78 8.75 71.98 0.63 -4.15 16 11 F -0.19 -4.02 14.04 44.97 0.63 -3.38 16 12 F -0.19 -3.77 15.66 44.97 0.70 -3.07 16 13 C -0.12 -2.22 9.53 30.59 0.29 -1.93 16 14 C -0.12 -1.77 9.76 30.59 0.30 -1.47 16 15 C 0.11 3.87 5.95 86.68 0.52 4.39 16 16 C -0.07 -2.10 0.73 -51.13 -0.04 -2.13 16 17 C -0.13 -3.59 7.10 71.98 0.51 -3.08 16 18 C 0.17 7.15 4.96 86.38 0.43 7.58 16 19 N -0.74 -38.87 4.80 -343.45 -1.65 -40.52 16 20 C -0.25 -14.50 9.99 84.04 0.84 -13.66 16 21 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 22 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 23 N -0.97 -60.93 13.06 21.65 0.28 -60.65 16 24 Si 0.97 47.96 29.55 68.60 2.03 49.99 16 25 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 26 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 27 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 28 H 0.07 1.00 6.61 -2.39 -0.02 0.99 16 29 H 0.06 1.03 6.98 -2.39 -0.02 1.02 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.11 2.03 4.34 -2.38 -0.01 2.02 16 32 H 0.10 1.50 7.87 -2.38 -0.02 1.48 16 33 H 0.07 2.00 7.46 -2.39 -0.02 1.98 16 34 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.13 1.93 7.30 -2.38 -0.02 1.91 16 37 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.13 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.09 2.57 7.84 -2.39 -0.02 2.55 16 41 H 0.04 2.05 6.94 -2.39 -0.02 2.03 16 42 H 0.08 1.83 6.67 -2.39 -0.02 1.82 16 43 H 0.03 1.16 6.74 -2.39 -0.02 1.14 16 44 H 0.07 1.83 6.88 -2.39 -0.02 1.81 16 45 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 46 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 47 H 0.38 20.87 5.99 -92.71 -0.56 20.32 16 48 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -74.83 378.42 5.22 -69.61 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: 0.42 Total: 31.37 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 5.53 Total: 1.41 kcal Atomic # 7 Polarization: -117.52 SS G_CDS: -4.04 Total: -121.56 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.05 Total: -24.36 kcal Atomic # 9 Polarization: -7.79 SS G_CDS: 1.34 Total: -6.45 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.99 kcal Total: -74.83 5.22 -69.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182637574.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.424 kcal (2) G-P(sol) polarization free energy of solvation -74.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds