Wall clock time and date at job start Tue Mar 31 2020 17:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.52476 * 2 1 4 4 C 1.53194 * 109.51251 * 239.92379 * 2 1 3 5 5 N 1.46931 * 108.76321 * 294.69856 * 4 2 1 6 6 C 1.34773 * 120.62852 * 126.36110 * 5 4 2 7 7 O 1.21281 * 120.00379 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00130 * 180.02562 * 6 5 4 9 9 C 1.52992 * 109.47365 * 179.97438 * 8 6 5 10 10 C 1.53781 * 113.61713 * 274.13739 * 9 8 6 11 11 C 1.53954 * 87.02246 * 220.04693 * 10 9 8 12 12 F 1.39901 * 113.53957 * 270.81480 * 11 10 9 13 13 F 1.39892 * 113.74575 * 139.94116 * 11 10 9 14 14 C 1.53781 * 113.61572 * 176.52935 * 9 8 6 15 15 C 1.46924 * 118.73897 * 306.37969 * 5 4 2 16 16 C 1.53194 * 108.77390 * 53.61086 * 15 5 4 17 17 C 1.53040 * 109.31367 * 305.36176 * 16 15 5 18 18 H 1.08995 * 109.45933 * 301.36091 * 17 16 15 19 19 C 1.53001 * 109.45855 * 181.38794 * 17 16 15 20 20 N 1.46490 * 109.47264 * 64.97245 * 19 17 16 21 21 C 1.36935 * 120.00121 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00139 * 0.02562 * 21 20 19 23 23 C 1.38816 * 120.00401 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99569 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00172 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47055 * 180.02562 * 25 23 21 27 27 H 1.48505 * 109.46653 * 299.99639 * 25 23 21 28 28 H 1.48495 * 109.47483 * 60.00002 * 25 23 21 29 29 H 1.08998 * 109.47104 * 299.91573 * 1 2 3 30 30 H 1.08995 * 109.46976 * 59.91986 * 1 2 3 31 31 H 1.09003 * 109.47162 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.60048 * 174.91037 * 4 2 1 33 33 H 1.09001 * 109.70040 * 54.54802 * 4 2 1 34 34 H 1.09003 * 109.46896 * 300.00254 * 8 6 5 35 35 H 1.09001 * 109.46583 * 59.99730 * 8 6 5 36 36 H 1.09001 * 112.85076 * 45.33575 * 9 8 6 37 37 H 1.08994 * 113.61234 * 334.56623 * 10 9 8 38 38 H 1.09001 * 113.61262 * 105.46771 * 10 9 8 39 39 H 1.09007 * 113.61216 * 254.53462 * 14 9 8 40 40 H 1.08998 * 113.61293 * 25.34681 * 14 9 8 41 41 H 1.08997 * 109.58682 * 293.82790 * 15 5 4 42 42 H 1.09000 * 109.70075 * 173.46616 * 15 5 4 43 43 H 1.09002 * 109.49391 * 185.41031 * 16 15 5 44 44 H 1.08995 * 109.50041 * 65.31952 * 16 15 5 45 45 H 1.09003 * 109.46836 * 304.96952 * 19 17 16 46 46 H 1.08999 * 109.47071 * 184.97991 * 19 17 16 47 47 H 0.97000 * 120.00577 * 0.02562 * 20 19 17 48 48 H 0.97001 * 119.99885 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7236 -1.2495 5 7 1.6516 -2.1380 -1.1696 6 6 0.9741 -2.7214 -2.1781 7 8 0.6811 -2.0784 -3.1638 8 6 0.5806 -4.1729 -2.0810 9 6 -0.1729 -4.5829 -3.3478 10 6 -1.6804 -4.2842 -3.2918 11 6 -1.8933 -5.6396 -3.9902 12 9 -1.8805 -5.5568 -5.3867 13 9 -2.9866 -6.3609 -3.4988 14 6 -0.5472 -6.0740 -3.3866 15 6 2.0138 -2.9039 0.0307 16 6 1.5027 -2.1556 1.2659 17 6 2.0408 -0.7231 1.2484 18 1 3.1305 -0.7446 1.2353 19 6 1.5607 0.0170 2.4985 20 7 2.1471 -0.6035 3.6888 21 6 1.8591 -0.1072 4.9321 22 1 1.1992 0.7415 5.0352 23 6 2.4152 -0.6948 6.0601 24 7 3.2199 -1.7288 5.9345 25 14 2.0216 -0.0181 7.7562 26 1 2.7359 -0.8156 8.7853 27 1 2.4587 1.3988 7.8374 28 1 0.5581 -0.0992 7.9942 29 1 -0.3633 0.5125 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1279 -0.6463 -1.2978 33 1 1.6034 -0.2734 -2.1402 34 1 1.4759 -4.7858 -1.9758 35 1 -0.0627 -4.3176 -1.2131 36 1 0.3086 -4.2298 -4.2597 37 1 -2.0808 -4.2474 -2.2788 38 1 -1.9787 -3.4284 -3.8974 39 1 0.0681 -6.6610 -4.0685 40 1 -0.6358 -6.5277 -2.3995 41 1 3.0977 -3.0043 0.0869 42 1 1.5569 -3.8926 -0.0126 43 1 1.8476 -2.6629 2.1670 44 1 0.4130 -2.1352 1.2539 45 1 0.4737 -0.0380 2.5582 46 1 1.8690 1.0610 2.4435 47 1 2.7402 -1.3655 3.5964 48 1 3.4240 -2.0804 5.0538 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184682310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:48 Heat of formation + Delta-G solvation = -115.164915 kcal Electronic energy + Delta-G solvation = -29150.766235 eV Core-core repulsion = 24876.804103 eV Total energy + Delta-G solvation = -4273.962132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.10092 -47.43721 -40.67969 -38.87992 -37.64213 -35.18622 -33.69505 -32.01134 -30.49366 -30.22649 -27.05037 -26.65970 -26.53311 -23.85924 -23.33078 -23.11706 -21.65020 -20.47945 -19.83494 -18.41955 -17.70370 -17.51087 -17.14583 -16.89240 -16.53665 -16.12888 -15.66107 -15.06734 -14.97121 -14.74076 -14.31099 -14.20558 -13.96107 -13.76498 -13.71889 -13.66773 -13.44417 -13.07858 -12.99577 -12.92218 -12.66556 -12.52053 -12.32369 -11.75479 -11.68908 -11.53042 -11.37491 -11.26978 -11.05155 -10.77317 -10.75503 -10.74377 -10.44540 -10.30371 -10.22472 -9.97851 -9.82842 -9.20056 -8.89849 -8.68828 -7.02314 -6.13546 -3.12754 2.47087 2.82026 3.14075 3.43249 3.49593 3.52791 3.70246 3.86912 3.95961 3.96803 4.40419 4.62228 4.64593 4.77430 4.84031 4.90662 4.94962 5.00993 5.01663 5.04705 5.11481 5.15517 5.28163 5.35183 5.39624 5.42378 5.46973 5.57617 5.63777 5.69414 5.73950 5.76803 5.86710 5.88792 5.92591 6.10120 6.16216 6.26477 6.31619 6.36876 6.52656 6.68985 6.81627 7.27615 7.78347 8.02066 8.72857 9.20460 10.06655 10.21726 11.35096 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.018629 B = 0.002352 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.633804 B =11903.905618 C =12612.847785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.081 0.919 4 C 0.117 3.883 5 N -0.605 5.605 6 C 0.515 3.485 7 O -0.545 6.545 8 C -0.131 4.131 9 C -0.087 4.087 10 C -0.158 4.158 11 C 0.252 3.748 12 F -0.181 7.181 13 F -0.192 7.192 14 C -0.162 4.162 15 C 0.104 3.896 16 C -0.128 4.128 17 C -0.090 4.090 18 H 0.070 0.930 19 C 0.164 3.836 20 N -0.743 5.743 21 C -0.330 4.330 22 H 0.063 0.937 23 C -0.046 4.046 24 N -0.945 5.945 25 Si 1.079 2.921 26 H -0.285 1.285 27 H -0.295 1.295 28 H -0.295 1.295 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.022 0.978 46 H 0.018 0.982 47 H 0.366 0.634 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.689 -7.133 -20.028 22.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.099 0.901 4 C -0.006 4.006 5 N -0.338 5.338 6 C 0.303 3.697 7 O -0.423 6.423 8 C -0.170 4.170 9 C -0.106 4.106 10 C -0.196 4.196 11 C 0.215 3.785 12 F -0.161 7.161 13 F -0.173 7.173 14 C -0.200 4.200 15 C -0.018 4.018 16 C -0.166 4.166 17 C -0.108 4.108 18 H 0.088 0.912 19 C 0.037 3.963 20 N -0.389 5.389 21 C -0.461 4.461 22 H 0.081 0.919 23 C -0.243 4.243 24 N -0.591 5.591 25 Si 0.910 3.090 26 H -0.210 1.210 27 H -0.223 1.223 28 H -0.223 1.223 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.132 0.868 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.088 0.912 45 H 0.040 0.960 46 H 0.036 0.964 47 H 0.199 0.801 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.743 -6.800 -18.910 20.900 hybrid contribution -0.237 -0.052 -1.631 1.649 sum -5.980 -6.851 -20.541 22.464 Atomic orbital electron populations 1.21846 0.94849 1.01873 1.01523 1.21462 0.96693 0.99498 0.94116 0.90059 1.21672 0.99360 0.80356 0.99171 1.48121 1.55837 1.11686 1.18205 1.20522 0.77313 0.89367 0.82455 1.90683 1.55004 1.65445 1.31153 1.21659 1.02368 0.93981 0.99032 1.22152 0.94766 0.93916 0.99726 1.24195 0.96833 0.95707 1.02832 1.22149 0.85353 0.94785 0.76182 1.93019 1.96739 1.96729 1.29645 1.93010 1.57675 1.79863 1.86773 1.24191 0.93785 0.98472 1.03583 1.21878 1.00618 0.94921 0.84407 1.21966 1.01498 0.96066 0.97045 1.21320 1.00138 0.94685 0.94704 0.91196 1.20646 0.95910 0.94610 0.85183 1.42383 1.57264 1.37454 1.01790 1.20029 1.27108 1.13702 0.85241 0.91893 1.25757 0.98199 0.97985 1.02376 1.70901 1.37922 1.25247 1.24996 0.83251 0.75400 0.74938 0.75422 1.21022 1.22296 1.22287 0.91999 0.93248 0.92686 0.91643 0.89110 0.88066 0.88237 0.86877 0.87111 0.88471 0.88665 0.86761 0.91096 0.89883 0.89836 0.91231 0.95991 0.96449 0.80079 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.38 37.16 0.31 -1.47 16 2 C -0.10 -1.20 2.72 -90.50 -0.25 -1.45 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.12 1.32 5.83 -3.71 -0.02 1.30 16 5 N -0.61 -6.47 2.41 -172.76 -0.42 -6.89 16 6 C 0.52 5.61 7.70 -10.99 -0.08 5.52 16 7 O -0.54 -7.68 15.20 5.56 0.08 -7.59 16 8 C -0.13 -0.94 3.87 -27.89 -0.11 -1.05 16 9 C -0.09 -0.65 3.09 -89.81 -0.28 -0.93 16 10 C -0.16 -1.28 7.44 -25.83 -0.19 -1.47 16 11 C 0.25 2.21 3.28 -25.83 -0.08 2.12 16 12 F -0.18 -1.90 17.38 2.25 0.04 -1.86 16 13 F -0.19 -1.97 17.41 2.25 0.04 -1.93 16 14 C -0.16 -1.01 7.43 -25.92 -0.19 -1.20 16 15 C 0.10 1.03 6.34 -3.71 -0.02 1.00 16 16 C -0.13 -1.66 4.90 -26.61 -0.13 -1.79 16 17 C -0.09 -1.29 1.96 -90.57 -0.18 -1.47 16 18 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 19 C 0.16 3.15 5.19 -4.05 -0.02 3.12 16 20 N -0.74 -17.98 5.31 -59.91 -0.32 -18.30 16 21 C -0.33 -9.17 9.99 -15.06 -0.15 -9.32 16 22 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 23 C -0.05 -1.31 5.50 -17.43 -0.10 -1.41 16 24 N -0.94 -28.57 13.70 55.49 0.76 -27.81 16 25 Si 1.08 25.59 29.92 -169.99 -5.09 20.50 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.30 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.30 -6.70 7.11 56.52 0.40 -6.30 16 29 H 0.06 0.82 6.58 -51.93 -0.34 0.48 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.70 5.97 -51.93 -0.31 0.38 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.10 7.00 -51.93 -0.36 0.74 16 34 H 0.10 0.55 7.94 -51.93 -0.41 0.14 16 35 H 0.10 0.60 7.43 -51.93 -0.39 0.22 16 36 H 0.11 1.01 7.73 -51.93 -0.40 0.60 16 37 H 0.11 0.78 7.92 -51.93 -0.41 0.37 16 38 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.11 0.55 8.10 -51.93 -0.42 0.12 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.62 5.94 -51.93 -0.31 0.31 16 43 H 0.08 1.26 7.15 -51.93 -0.37 0.89 16 44 H 0.07 0.93 6.33 -51.93 -0.33 0.60 16 45 H 0.02 0.44 6.74 -51.93 -0.35 0.09 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.37 8.91 5.68 -40.82 -0.23 8.67 16 48 H 0.25 7.47 6.77 -40.82 -0.28 7.19 16 LS Contribution 376.52 15.07 5.67 5.67 Total: -1.00 -33.05 376.52 -8.22 -41.27 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -7.50 Total: 5.42 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -1.49 Total: -8.50 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.03 Total: -52.99 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.08 Total: -7.59 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.08 Total: -3.79 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.09 Total: 20.50 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.05 -8.22 -41.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184682310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.892 kcal (2) G-P(sol) polarization free energy of solvation -33.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds