Wall clock time and date at job start Tue Mar 31 2020 17:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.52476 * 2 1 4 4 C 1.53194 * 109.51251 * 239.92379 * 2 1 3 5 5 N 1.46931 * 108.76321 * 294.69856 * 4 2 1 6 6 C 1.34773 * 120.62852 * 126.36110 * 5 4 2 7 7 O 1.21281 * 120.00379 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00130 * 180.02562 * 6 5 4 9 9 C 1.52992 * 109.47365 * 179.97438 * 8 6 5 10 10 C 1.53781 * 113.61713 * 274.13739 * 9 8 6 11 11 C 1.53954 * 87.02246 * 220.04693 * 10 9 8 12 12 F 1.39901 * 113.53957 * 270.81480 * 11 10 9 13 13 F 1.39892 * 113.74575 * 139.94116 * 11 10 9 14 14 C 1.53781 * 113.61572 * 176.52935 * 9 8 6 15 15 C 1.46924 * 118.73897 * 306.37969 * 5 4 2 16 16 C 1.53194 * 108.77390 * 53.61086 * 15 5 4 17 17 C 1.53040 * 109.31367 * 305.36176 * 16 15 5 18 18 H 1.08995 * 109.45933 * 301.36091 * 17 16 15 19 19 C 1.53001 * 109.45855 * 181.38794 * 17 16 15 20 20 N 1.46490 * 109.47264 * 64.97245 * 19 17 16 21 21 C 1.36935 * 120.00121 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00139 * 0.02562 * 21 20 19 23 23 C 1.38816 * 120.00401 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99569 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00172 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47055 * 180.02562 * 25 23 21 27 27 H 1.48505 * 109.46653 * 299.99639 * 25 23 21 28 28 H 1.48495 * 109.47483 * 60.00002 * 25 23 21 29 29 H 1.08998 * 109.47104 * 299.91573 * 1 2 3 30 30 H 1.08995 * 109.46976 * 59.91986 * 1 2 3 31 31 H 1.09003 * 109.47162 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.60048 * 174.91037 * 4 2 1 33 33 H 1.09001 * 109.70040 * 54.54802 * 4 2 1 34 34 H 1.09003 * 109.46896 * 300.00254 * 8 6 5 35 35 H 1.09001 * 109.46583 * 59.99730 * 8 6 5 36 36 H 1.09001 * 112.85076 * 45.33575 * 9 8 6 37 37 H 1.08994 * 113.61234 * 334.56623 * 10 9 8 38 38 H 1.09001 * 113.61262 * 105.46771 * 10 9 8 39 39 H 1.09007 * 113.61216 * 254.53462 * 14 9 8 40 40 H 1.08998 * 113.61293 * 25.34681 * 14 9 8 41 41 H 1.08997 * 109.58682 * 293.82790 * 15 5 4 42 42 H 1.09000 * 109.70075 * 173.46616 * 15 5 4 43 43 H 1.09002 * 109.49391 * 185.41031 * 16 15 5 44 44 H 1.08995 * 109.50041 * 65.31952 * 16 15 5 45 45 H 1.09003 * 109.46836 * 304.96952 * 19 17 16 46 46 H 1.08999 * 109.47071 * 184.97991 * 19 17 16 47 47 H 0.97000 * 120.00577 * 0.02562 * 20 19 17 48 48 H 0.97001 * 119.99885 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7236 -1.2495 5 7 1.6516 -2.1380 -1.1696 6 6 0.9741 -2.7214 -2.1781 7 8 0.6811 -2.0784 -3.1638 8 6 0.5806 -4.1729 -2.0810 9 6 -0.1729 -4.5829 -3.3478 10 6 -1.6804 -4.2842 -3.2918 11 6 -1.8933 -5.6396 -3.9902 12 9 -1.8805 -5.5568 -5.3867 13 9 -2.9866 -6.3609 -3.4988 14 6 -0.5472 -6.0740 -3.3866 15 6 2.0138 -2.9039 0.0307 16 6 1.5027 -2.1556 1.2659 17 6 2.0408 -0.7231 1.2484 18 1 3.1305 -0.7446 1.2353 19 6 1.5607 0.0170 2.4985 20 7 2.1471 -0.6035 3.6888 21 6 1.8591 -0.1072 4.9321 22 1 1.1992 0.7415 5.0352 23 6 2.4152 -0.6948 6.0601 24 7 3.2199 -1.7288 5.9345 25 14 2.0216 -0.0181 7.7562 26 1 2.7359 -0.8156 8.7853 27 1 2.4587 1.3988 7.8374 28 1 0.5581 -0.0992 7.9942 29 1 -0.3633 0.5125 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1279 -0.6463 -1.2978 33 1 1.6034 -0.2734 -2.1402 34 1 1.4759 -4.7858 -1.9758 35 1 -0.0627 -4.3176 -1.2131 36 1 0.3086 -4.2298 -4.2597 37 1 -2.0808 -4.2474 -2.2788 38 1 -1.9787 -3.4284 -3.8974 39 1 0.0681 -6.6610 -4.0685 40 1 -0.6358 -6.5277 -2.3995 41 1 3.0977 -3.0043 0.0869 42 1 1.5569 -3.8926 -0.0126 43 1 1.8476 -2.6629 2.1670 44 1 0.4130 -2.1352 1.2539 45 1 0.4737 -0.0380 2.5582 46 1 1.8690 1.0610 2.4435 47 1 2.7402 -1.3655 3.5964 48 1 3.4240 -2.0804 5.0538 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184682310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:48 Heat of formation + Delta-G solvation = -133.718246 kcal Electronic energy + Delta-G solvation = -29151.570768 eV Core-core repulsion = 24876.804103 eV Total energy + Delta-G solvation = -4274.766665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.82166 -48.17588 -41.56674 -39.74850 -38.48983 -36.78849 -34.99335 -33.32596 -31.83990 -31.15725 -28.33775 -27.67337 -27.19043 -25.47058 -24.36251 -24.18832 -22.96543 -21.22929 -20.61504 -19.67332 -19.09976 -18.41090 -18.20782 -17.54161 -17.24910 -16.99557 -16.71178 -16.49131 -16.08551 -15.75220 -15.62867 -15.35639 -15.06249 -15.00200 -14.59550 -14.50484 -14.42210 -14.21245 -14.16089 -13.68268 -13.58045 -13.50317 -13.30645 -12.77821 -12.70505 -12.64678 -12.52983 -12.22317 -12.12823 -12.05290 -11.90412 -11.85363 -11.76231 -11.44033 -11.40334 -11.36307 -11.13167 -10.89335 -10.70740 -9.60728 -9.07447 -8.38241 -5.31454 1.59286 1.66279 1.68338 1.85079 2.01220 2.52675 2.71583 2.84336 3.23653 3.35516 3.37622 3.40444 3.59982 3.67682 3.73420 3.85562 4.03382 4.13713 4.15458 4.23894 4.32396 4.40446 4.45263 4.49301 4.54007 4.59754 4.65974 4.68971 4.72332 4.75018 4.79711 4.82828 4.85069 4.87335 4.93338 5.02841 5.10671 5.14515 5.18470 5.28481 5.30465 5.48675 5.59569 5.60574 6.45193 6.52899 7.12397 7.19825 8.03131 8.13647 9.14220 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.018629 B = 0.002352 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.633804 B =11903.905618 C =12612.847785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 H 0.084 0.916 4 C 0.120 3.880 5 N -0.606 5.606 6 C 0.511 3.489 7 O -0.582 6.582 8 C -0.126 4.126 9 C -0.084 4.084 10 C -0.160 4.160 11 C 0.235 3.765 12 F -0.196 7.196 13 F -0.203 7.203 14 C -0.143 4.143 15 C 0.111 3.889 16 C -0.123 4.123 17 C -0.079 4.079 18 H 0.065 0.935 19 C 0.164 3.836 20 N -0.752 5.752 21 C -0.336 4.336 22 H 0.060 0.940 23 C -0.101 4.101 24 N -0.973 5.973 25 Si 1.125 2.875 26 H -0.291 1.291 27 H -0.281 1.281 28 H -0.279 1.279 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.129 0.871 35 H 0.120 0.880 36 H 0.096 0.904 37 H 0.123 0.877 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.137 0.863 41 H 0.080 0.920 42 H 0.116 0.884 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.018 0.982 46 H 0.008 0.992 47 H 0.363 0.637 48 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.658 -8.078 -20.085 22.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 H 0.102 0.898 4 C -0.003 4.003 5 N -0.338 5.338 6 C 0.302 3.698 7 O -0.462 6.462 8 C -0.165 4.165 9 C -0.103 4.103 10 C -0.198 4.198 11 C 0.199 3.801 12 F -0.177 7.177 13 F -0.184 7.184 14 C -0.181 4.181 15 C -0.011 4.011 16 C -0.161 4.161 17 C -0.098 4.098 18 H 0.084 0.916 19 C 0.038 3.962 20 N -0.398 5.398 21 C -0.467 4.467 22 H 0.078 0.922 23 C -0.293 4.293 24 N -0.621 5.621 25 Si 0.950 3.050 26 H -0.217 1.217 27 H -0.207 1.207 28 H -0.205 1.205 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.147 0.853 35 H 0.138 0.862 36 H 0.114 0.886 37 H 0.142 0.858 38 H 0.098 0.902 39 H 0.125 0.875 40 H 0.155 0.845 41 H 0.098 0.902 42 H 0.134 0.866 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.036 0.964 46 H 0.026 0.974 47 H 0.196 0.804 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.726 -7.733 -19.002 21.299 hybrid contribution -0.297 0.322 -1.673 1.730 sum -6.023 -7.411 -20.675 22.774 Atomic orbital electron populations 1.21784 0.94876 1.01714 1.01175 1.21388 0.96526 0.99598 0.93495 0.89805 1.21569 0.99829 0.80942 0.97917 1.48179 1.55723 1.11390 1.18501 1.21176 0.76341 0.90675 0.81647 1.90677 1.56305 1.66648 1.32578 1.21736 1.03836 0.91498 0.99405 1.22043 0.93981 0.94920 0.99351 1.24262 0.97649 0.94759 1.03119 1.22587 0.86377 0.95560 0.75551 1.92984 1.96844 1.96847 1.30994 1.92986 1.58467 1.80116 1.86808 1.24170 0.91531 0.97631 1.04728 1.21903 1.01357 0.95586 0.82224 1.21869 1.01190 0.95084 0.97958 1.21192 0.99813 0.95517 0.93261 0.91612 1.20770 0.95348 0.94423 0.85682 1.42544 1.57408 1.37534 1.02274 1.20355 1.26270 1.13255 0.86837 0.92174 1.27105 0.98126 0.98003 1.06021 1.70995 1.39712 1.26726 1.24681 0.82658 0.76032 0.74921 0.71407 1.21734 1.20682 1.20500 0.93238 0.92626 0.92737 0.90688 0.89839 0.85259 0.86220 0.88597 0.85828 0.90154 0.87512 0.84456 0.90210 0.86594 0.91998 0.91582 0.96394 0.97386 0.80394 0.94345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.38 71.98 0.60 -2.71 16 2 C -0.09 -2.12 2.72 -10.71 -0.03 -2.15 16 3 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 4 C 0.12 2.53 5.83 86.36 0.50 3.04 16 5 N -0.61 -11.49 2.41 -818.89 -1.97 -13.46 16 6 C 0.51 9.95 7.70 87.66 0.67 10.63 16 7 O -0.58 -15.79 15.20 -3.03 -0.05 -15.84 16 8 C -0.13 -1.37 3.87 29.85 0.12 -1.25 16 9 C -0.08 -1.08 3.09 -10.27 -0.03 -1.11 16 10 C -0.16 -2.40 7.44 31.18 0.23 -2.17 16 11 C 0.24 3.84 3.28 31.18 0.10 3.95 16 12 F -0.20 -4.07 17.38 44.97 0.78 -3.29 16 13 F -0.20 -3.93 17.41 44.97 0.78 -3.14 16 14 C -0.14 -1.36 7.43 31.12 0.23 -1.13 16 15 C 0.11 1.86 6.34 86.36 0.55 2.41 16 16 C -0.12 -3.02 4.90 30.67 0.15 -2.87 16 17 C -0.08 -2.22 1.96 -10.76 -0.02 -2.24 16 18 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 19 C 0.16 6.31 5.19 86.38 0.45 6.76 16 20 N -0.75 -36.70 5.31 -343.47 -1.83 -38.53 16 21 C -0.34 -18.70 9.99 84.03 0.84 -17.86 16 22 H 0.06 3.32 7.83 -2.91 -0.02 3.30 16 23 C -0.10 -5.76 5.50 84.86 0.47 -5.29 16 24 N -0.97 -59.20 13.70 21.65 0.30 -58.90 16 25 Si 1.12 51.16 29.92 68.60 2.05 53.21 16 26 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 27 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 28 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 29 H 0.05 1.29 6.58 -2.39 -0.02 1.28 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 1.30 5.97 -2.39 -0.01 1.29 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 33 H 0.08 1.94 7.00 -2.39 -0.02 1.92 16 34 H 0.13 0.76 7.94 -2.39 -0.02 0.74 16 35 H 0.12 0.90 7.43 -2.39 -0.02 0.88 16 36 H 0.10 1.61 7.73 -2.39 -0.02 1.59 16 37 H 0.12 1.50 7.92 -2.39 -0.02 1.48 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.14 0.72 8.10 -2.39 -0.02 0.70 16 41 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.12 1.21 5.94 -2.39 -0.01 1.20 16 43 H 0.06 1.82 7.15 -2.39 -0.02 1.81 16 44 H 0.07 1.67 6.33 -2.39 -0.02 1.66 16 45 H 0.02 0.72 6.74 -2.39 -0.02 0.70 16 46 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 47 H 0.36 17.93 5.68 -92.71 -0.53 17.41 16 48 H 0.25 14.72 6.77 -92.71 -0.63 14.09 16 Total: -1.00 -72.29 376.52 5.49 -66.80 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.59 Total: 25.19 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 4.83 Total: -12.02 kcal Atomic # 7 Polarization: -107.39 SS G_CDS: -3.50 Total: -110.90 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.05 Total: -15.84 kcal Atomic # 9 Polarization: -8.00 SS G_CDS: 1.56 Total: -6.44 kcal Atomic # 14 Polarization: 51.16 SS G_CDS: 2.05 Total: 53.21 kcal Total: -72.29 5.49 -66.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184682310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.919 kcal (2) G-P(sol) polarization free energy of solvation -72.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds