Wall clock time and date at job start Tue Mar 31 2020 17:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.50157 * 2 1 4 4 C 1.52760 * 109.59213 * 240.04392 * 2 1 3 5 5 N 1.46926 * 109.01153 * 185.53694 * 4 2 1 6 6 C 1.34776 * 120.62974 * 233.58391 * 5 4 2 7 7 O 1.21282 * 119.99940 * 5.29610 * 6 5 4 8 8 C 1.50704 * 120.00018 * 185.29054 * 6 5 4 9 9 C 1.52997 * 112.84384 * 57.24619 * 8 6 5 10 10 F 1.39905 * 109.47399 * 76.44946 * 9 8 6 11 11 F 1.39901 * 109.46856 * 196.44367 * 9 8 6 12 12 C 1.53782 * 113.61519 * 188.44005 * 8 6 5 13 13 C 1.53783 * 87.07752 * 89.11954 * 12 8 6 14 14 C 1.53781 * 87.17518 * 25.38792 * 13 12 8 15 15 C 1.46928 * 118.73775 * 53.30792 * 5 4 2 16 16 C 1.53186 * 108.77622 * 306.64386 * 15 5 4 17 17 C 1.53038 * 109.49961 * 120.06360 * 2 1 3 18 18 H 1.08997 * 109.46490 * 61.32804 * 17 2 1 19 19 C 1.53001 * 109.46284 * 301.36617 * 17 2 1 20 20 N 1.46495 * 109.47651 * 174.92890 * 19 17 2 21 21 C 1.36939 * 120.00468 * 180.02562 * 20 19 17 22 22 H 1.08000 * 119.99723 * 359.97438 * 21 20 19 23 23 C 1.38807 * 120.00428 * 180.02562 * 21 20 19 24 24 N 1.31620 * 119.99865 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00246 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47430 * 59.99680 * 25 23 21 27 27 H 1.48501 * 109.47376 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46966 * 299.99919 * 25 23 21 29 29 H 1.09004 * 109.46480 * 299.93697 * 1 2 3 30 30 H 1.08993 * 109.47100 * 59.93422 * 1 2 3 31 31 H 1.08997 * 109.47064 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.51063 * 65.65176 * 4 2 1 33 33 H 1.09006 * 109.43343 * 305.37300 * 4 2 1 34 34 H 1.08996 * 109.47521 * 316.44400 * 9 8 6 35 35 H 1.09002 * 113.61290 * 334.57280 * 12 8 6 36 36 H 1.08996 * 113.68923 * 203.67540 * 12 8 6 37 37 H 1.08995 * 113.61496 * 139.97879 * 13 12 8 38 38 H 1.09005 * 113.61660 * 270.79747 * 13 12 8 39 39 H 1.09007 * 113.61364 * 89.15672 * 14 13 12 40 40 H 1.08996 * 113.61833 * 220.06214 * 14 13 12 41 41 H 1.09000 * 109.58780 * 66.43516 * 15 5 4 42 42 H 1.08998 * 109.58354 * 186.71036 * 15 5 4 43 43 H 1.09003 * 109.49658 * 174.58286 * 16 15 5 44 44 H 1.09001 * 109.50139 * 294.68676 * 16 15 5 45 45 H 1.09004 * 109.47486 * 294.93723 * 19 17 2 46 46 H 1.09002 * 109.46764 * 54.92960 * 19 17 2 47 47 H 0.97003 * 120.00116 * 0.02562 * 20 19 17 48 48 H 0.96994 * 120.00132 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0422 -0.7186 -1.2469 5 7 3.5053 -0.8284 -1.1690 6 6 4.2819 -0.3847 -2.1772 7 8 3.7821 0.1971 -3.1167 8 6 5.7713 -0.6112 -2.1370 9 6 6.1440 -2.0900 -2.0146 10 9 5.9771 -2.7172 -3.2540 11 9 7.4789 -2.2026 -1.6112 12 6 6.5369 0.1273 -3.2475 13 6 6.6380 1.3169 -2.2782 14 6 6.5046 0.2980 -1.1341 15 6 4.1060 -1.4255 0.0316 16 6 3.5709 -0.6939 1.2666 17 6 2.0408 -0.7227 1.2485 18 1 1.6973 -1.7570 1.2356 19 6 1.5032 -0.0229 2.4984 20 7 1.8912 -0.7833 3.6889 21 6 1.5190 -0.3461 4.9321 22 1 0.9398 0.5596 5.0350 23 6 1.8871 -1.0663 6.0602 24 7 2.5935 -2.1699 5.9349 25 14 1.3788 -0.4703 7.7559 26 1 -0.1028 -0.4105 7.8362 27 1 1.8923 -1.4094 8.7853 28 1 1.9424 0.8828 7.9945 29 1 -0.3632 0.5129 0.8906 30 1 -0.3633 0.5148 -0.8893 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7653 -0.1498 -2.1345 33 1 1.6032 -1.7151 -1.2973 34 1 5.4998 -2.5673 -1.2762 35 1 5.9329 0.3341 -4.1310 36 1 7.5000 -0.3223 -3.4889 37 1 7.6045 1.8202 -2.3041 38 1 5.7985 2.0087 -2.3469 39 1 7.4588 -0.1058 -0.7955 40 1 5.8746 0.6423 -0.3140 41 1 3.8387 -2.4808 0.0877 42 1 5.1904 -1.3252 -0.0139 43 1 3.9335 -1.1884 2.1678 44 1 3.9155 0.3401 1.2546 45 1 1.9183 0.9832 2.5586 46 1 0.4162 0.0354 2.4429 47 1 2.4118 -1.5966 3.5967 48 1 2.8510 -2.6730 6.7232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184992386.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:10 Heat of formation + Delta-G solvation = -109.897603 kcal Electronic energy + Delta-G solvation = -30350.729493 eV Core-core repulsion = 26076.995769 eV Total energy + Delta-G solvation = -4273.733724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.30562 -47.26051 -41.17996 -38.89907 -37.31220 -35.17996 -33.72138 -32.08668 -30.41331 -29.58075 -27.05319 -26.76886 -25.97582 -24.39332 -23.45947 -22.58846 -21.77595 -20.99654 -19.79444 -18.77466 -17.91445 -17.52591 -17.43089 -17.13489 -16.35815 -16.12219 -15.26112 -15.19738 -14.81662 -14.45710 -14.14008 -14.07635 -13.99242 -13.70193 -13.63024 -13.37771 -13.36932 -12.91114 -12.73029 -12.66042 -12.56332 -12.43831 -12.29291 -11.96079 -11.85221 -11.68777 -11.25892 -11.04701 -10.94768 -10.84445 -10.79159 -10.59350 -10.45982 -10.35067 -10.25743 -10.04888 -9.91170 -9.67398 -8.90008 -8.76607 -6.94678 -5.80495 -3.08581 2.19709 2.65071 3.35729 3.41447 3.46296 3.46879 3.73373 3.89134 3.90135 4.14947 4.43453 4.54996 4.57952 4.66004 4.75060 4.83957 4.87893 4.97728 5.03069 5.18246 5.28054 5.32966 5.39385 5.41028 5.53543 5.58367 5.61723 5.67287 5.69232 5.75267 5.76547 5.82132 5.89553 5.98500 6.02263 6.14600 6.20860 6.25420 6.34596 6.42922 6.54011 6.77507 6.86838 7.14575 7.66488 7.86918 8.38967 9.50160 10.07807 10.42297 11.42387 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015758 B = 0.003143 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.451679 B = 8906.689579 C = 9740.750374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.073 0.927 4 C 0.118 3.882 5 N -0.604 5.604 6 C 0.546 3.454 7 O -0.527 6.527 8 C -0.169 4.169 9 C 0.273 3.727 10 F -0.197 7.197 11 F -0.195 7.195 12 C -0.109 4.109 13 C -0.136 4.136 14 C -0.121 4.121 15 C 0.092 3.908 16 C -0.124 4.124 17 C -0.089 4.089 18 H 0.073 0.927 19 C 0.157 3.843 20 N -0.732 5.732 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.066 0.934 45 H 0.016 0.984 46 H 0.025 0.975 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.779 2.157 -18.254 19.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.004 4.004 5 N -0.337 5.337 6 C 0.332 3.668 7 O -0.403 6.403 8 C -0.173 4.173 9 C 0.220 3.780 10 F -0.179 7.179 11 F -0.176 7.176 12 C -0.147 4.147 13 C -0.173 4.173 14 C -0.158 4.158 15 C -0.030 4.030 16 C -0.162 4.162 17 C -0.108 4.108 18 H 0.092 0.908 19 C 0.029 3.971 20 N -0.376 5.376 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.583 5.583 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.135 0.865 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.124 0.876 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.111 0.889 44 H 0.085 0.915 45 H 0.034 0.966 46 H 0.042 0.958 47 H 0.217 0.783 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.458 2.531 -18.642 19.890 hybrid contribution 0.001 -0.199 1.090 1.108 sum 6.459 2.332 -17.552 18.847 Atomic orbital electron populations 1.21828 0.94214 1.02260 1.02151 1.21380 0.96266 0.99989 0.94050 0.90851 1.21684 0.78037 1.01192 0.99509 1.48111 1.07315 1.60376 1.17873 1.19352 0.86565 0.78610 0.82228 1.90685 1.74286 1.41058 1.34261 1.23258 0.95063 0.94369 1.04592 1.21847 0.80752 0.92469 0.82971 1.93008 1.95343 1.83815 1.45690 1.92980 1.37447 1.96661 1.90503 1.22782 0.99674 0.95404 0.96817 1.22801 1.03063 0.96448 0.94972 1.23124 1.00994 0.95215 0.96516 1.22162 0.98020 0.97963 0.84889 1.21925 0.96277 1.01148 0.96830 1.21348 0.94488 1.00314 0.94657 0.90849 1.20746 0.96729 0.94034 0.85555 1.42360 1.65429 1.28973 1.00840 1.19177 1.27799 1.06266 0.83850 0.91348 1.24707 1.00862 0.97497 0.97783 1.69632 1.42702 1.17266 1.28709 0.86284 0.78083 0.77664 0.84257 1.21304 1.21682 1.21299 0.91223 0.92952 0.92451 0.89038 0.91187 0.86476 0.89138 0.88854 0.90356 0.89509 0.87561 0.89672 0.90634 0.89906 0.88942 0.91544 0.96576 0.95753 0.78337 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.82 37.16 0.33 -1.34 16 2 C -0.10 -1.18 2.40 -90.72 -0.22 -1.40 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.12 1.35 5.70 -3.93 -0.02 1.33 16 5 N -0.60 -6.93 2.98 -173.03 -0.52 -7.44 16 6 C 0.55 6.81 6.45 -10.98 -0.07 6.74 16 7 O -0.53 -8.10 15.30 5.56 0.09 -8.02 16 8 C -0.17 -1.73 0.45 -154.76 -0.07 -1.80 16 9 C 0.27 2.74 4.24 37.16 0.16 2.89 16 10 F -0.20 -2.34 17.09 2.25 0.04 -2.30 16 11 F -0.19 -2.00 15.86 2.25 0.04 -1.96 16 12 C -0.11 -1.07 6.77 -25.92 -0.18 -1.24 16 13 C -0.14 -1.20 7.80 -25.92 -0.20 -1.40 16 14 C -0.12 -1.07 5.88 -25.83 -0.15 -1.23 16 15 C 0.09 0.97 4.36 -3.71 -0.02 0.95 16 16 C -0.12 -1.63 5.25 -26.61 -0.14 -1.77 16 17 C -0.09 -1.28 1.73 -90.58 -0.16 -1.43 16 18 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 19 C 0.16 2.93 5.41 -4.04 -0.02 2.91 16 20 N -0.73 -17.46 5.32 -59.91 -0.32 -17.78 16 21 C -0.24 -6.50 9.99 -15.06 -0.15 -6.66 16 22 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -27.31 13.06 55.49 0.72 -26.59 16 25 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H 0.07 0.87 6.29 -51.93 -0.33 0.54 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 1.12 7.00 -51.93 -0.36 0.76 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.12 1.01 5.33 -51.93 -0.28 0.73 16 35 H 0.09 1.00 7.36 -51.93 -0.38 0.62 16 36 H 0.09 0.82 8.07 -51.93 -0.42 0.40 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.11 0.85 7.02 -51.93 -0.36 0.48 16 40 H 0.08 0.79 7.45 -51.93 -0.39 0.40 16 41 H 0.08 0.73 8.02 -51.93 -0.42 0.31 16 42 H 0.08 0.75 4.02 -51.93 -0.21 0.54 16 43 H 0.09 1.41 7.15 -51.93 -0.37 1.04 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.02 0.47 6.14 -51.93 -0.32 0.15 16 47 H 0.38 9.48 6.85 -40.82 -0.28 9.20 16 48 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 371.34 15.07 5.60 5.60 Total: -1.00 -30.91 371.34 -7.85 -38.76 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.46 Total: 6.71 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -1.01 Total: -3.90 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -0.11 Total: -51.81 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.09 Total: -8.02 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.07 Total: -4.26 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.91 -7.85 -38.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184992386.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.142 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds