Wall clock time and date at job start Tue Mar 31 2020 17:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.50157 * 2 1 4 4 C 1.52760 * 109.59213 * 240.04392 * 2 1 3 5 5 N 1.46926 * 109.01153 * 185.53694 * 4 2 1 6 6 C 1.34776 * 120.62974 * 233.58391 * 5 4 2 7 7 O 1.21282 * 119.99940 * 5.29610 * 6 5 4 8 8 C 1.50704 * 120.00018 * 185.29054 * 6 5 4 9 9 C 1.52997 * 112.84384 * 57.24619 * 8 6 5 10 10 F 1.39905 * 109.47399 * 76.44946 * 9 8 6 11 11 F 1.39901 * 109.46856 * 196.44367 * 9 8 6 12 12 C 1.53782 * 113.61519 * 188.44005 * 8 6 5 13 13 C 1.53783 * 87.07752 * 89.11954 * 12 8 6 14 14 C 1.53781 * 87.17518 * 25.38792 * 13 12 8 15 15 C 1.46928 * 118.73775 * 53.30792 * 5 4 2 16 16 C 1.53186 * 108.77622 * 306.64386 * 15 5 4 17 17 C 1.53038 * 109.49961 * 120.06360 * 2 1 3 18 18 H 1.08997 * 109.46490 * 61.32804 * 17 2 1 19 19 C 1.53001 * 109.46284 * 301.36617 * 17 2 1 20 20 N 1.46495 * 109.47651 * 174.92890 * 19 17 2 21 21 C 1.36939 * 120.00468 * 180.02562 * 20 19 17 22 22 H 1.08000 * 119.99723 * 359.97438 * 21 20 19 23 23 C 1.38807 * 120.00428 * 180.02562 * 21 20 19 24 24 N 1.31620 * 119.99865 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00246 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47430 * 59.99680 * 25 23 21 27 27 H 1.48501 * 109.47376 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46966 * 299.99919 * 25 23 21 29 29 H 1.09004 * 109.46480 * 299.93697 * 1 2 3 30 30 H 1.08993 * 109.47100 * 59.93422 * 1 2 3 31 31 H 1.08997 * 109.47064 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.51063 * 65.65176 * 4 2 1 33 33 H 1.09006 * 109.43343 * 305.37300 * 4 2 1 34 34 H 1.08996 * 109.47521 * 316.44400 * 9 8 6 35 35 H 1.09002 * 113.61290 * 334.57280 * 12 8 6 36 36 H 1.08996 * 113.68923 * 203.67540 * 12 8 6 37 37 H 1.08995 * 113.61496 * 139.97879 * 13 12 8 38 38 H 1.09005 * 113.61660 * 270.79747 * 13 12 8 39 39 H 1.09007 * 113.61364 * 89.15672 * 14 13 12 40 40 H 1.08996 * 113.61833 * 220.06214 * 14 13 12 41 41 H 1.09000 * 109.58780 * 66.43516 * 15 5 4 42 42 H 1.08998 * 109.58354 * 186.71036 * 15 5 4 43 43 H 1.09003 * 109.49658 * 174.58286 * 16 15 5 44 44 H 1.09001 * 109.50139 * 294.68676 * 16 15 5 45 45 H 1.09004 * 109.47486 * 294.93723 * 19 17 2 46 46 H 1.09002 * 109.46764 * 54.92960 * 19 17 2 47 47 H 0.97003 * 120.00116 * 0.02562 * 20 19 17 48 48 H 0.96994 * 120.00132 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0422 -0.7186 -1.2469 5 7 3.5053 -0.8284 -1.1690 6 6 4.2819 -0.3847 -2.1772 7 8 3.7821 0.1971 -3.1167 8 6 5.7713 -0.6112 -2.1370 9 6 6.1440 -2.0900 -2.0146 10 9 5.9771 -2.7172 -3.2540 11 9 7.4789 -2.2026 -1.6112 12 6 6.5369 0.1273 -3.2475 13 6 6.6380 1.3169 -2.2782 14 6 6.5046 0.2980 -1.1341 15 6 4.1060 -1.4255 0.0316 16 6 3.5709 -0.6939 1.2666 17 6 2.0408 -0.7227 1.2485 18 1 1.6973 -1.7570 1.2356 19 6 1.5032 -0.0229 2.4984 20 7 1.8912 -0.7833 3.6889 21 6 1.5190 -0.3461 4.9321 22 1 0.9398 0.5596 5.0350 23 6 1.8871 -1.0663 6.0602 24 7 2.5935 -2.1699 5.9349 25 14 1.3788 -0.4703 7.7559 26 1 -0.1028 -0.4105 7.8362 27 1 1.8923 -1.4094 8.7853 28 1 1.9424 0.8828 7.9945 29 1 -0.3632 0.5129 0.8906 30 1 -0.3633 0.5148 -0.8893 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7653 -0.1498 -2.1345 33 1 1.6032 -1.7151 -1.2973 34 1 5.4998 -2.5673 -1.2762 35 1 5.9329 0.3341 -4.1310 36 1 7.5000 -0.3223 -3.4889 37 1 7.6045 1.8202 -2.3041 38 1 5.7985 2.0087 -2.3469 39 1 7.4588 -0.1058 -0.7955 40 1 5.8746 0.6423 -0.3140 41 1 3.8387 -2.4808 0.0877 42 1 5.1904 -1.3252 -0.0139 43 1 3.9335 -1.1884 2.1678 44 1 3.9155 0.3401 1.2546 45 1 1.9183 0.9832 2.5586 46 1 0.4162 0.0354 2.4429 47 1 2.4118 -1.5966 3.5967 48 1 2.8510 -2.6730 6.7232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184992386.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:09 Heat of formation + Delta-G solvation = -127.150410 kcal Electronic energy + Delta-G solvation = -30351.477631 eV Core-core repulsion = 26076.995769 eV Total energy + Delta-G solvation = -4274.481862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.12494 -48.09037 -42.10707 -39.91108 -38.29633 -36.63744 -35.11431 -33.48108 -32.03835 -30.41960 -28.45434 -27.70302 -26.74471 -25.79184 -24.74237 -23.67541 -22.89591 -22.10193 -20.89691 -19.69197 -19.10134 -18.72592 -18.36500 -18.24444 -17.35954 -16.96980 -16.73419 -16.23111 -16.00203 -15.68912 -15.46422 -15.23510 -15.01227 -14.92335 -14.56977 -14.47779 -14.44825 -14.03896 -13.99307 -13.81609 -13.43681 -13.34774 -13.17508 -13.02702 -12.91538 -12.86300 -12.74470 -12.66558 -12.22014 -12.05307 -11.94709 -11.87647 -11.64925 -11.55044 -11.52878 -11.28138 -11.18642 -10.94708 -10.83347 -9.77403 -8.93760 -7.92653 -5.19725 1.24655 1.49268 1.50820 1.57030 1.72501 2.54987 2.58064 2.97906 3.04011 3.10761 3.35170 3.41091 3.67722 3.68242 3.73177 3.77707 3.85369 3.94826 3.99178 4.19415 4.23421 4.31333 4.35101 4.50616 4.58919 4.62127 4.66057 4.68752 4.72689 4.77259 4.82986 4.88607 4.94346 4.98096 4.99444 5.09728 5.13046 5.18839 5.25679 5.30419 5.35657 5.46783 5.52477 5.59087 6.19223 6.30466 6.90385 7.37625 8.14190 8.38287 9.30321 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015758 B = 0.003143 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.451679 B = 8906.689579 C = 9740.750374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 H 0.065 0.935 4 C 0.120 3.880 5 N -0.602 5.602 6 C 0.545 3.455 7 O -0.560 6.560 8 C -0.171 4.171 9 C 0.274 3.726 10 F -0.209 7.209 11 F -0.194 7.194 12 C -0.110 4.110 13 C -0.132 4.132 14 C -0.114 4.114 15 C 0.097 3.903 16 C -0.118 4.118 17 C -0.079 4.079 18 H 0.072 0.928 19 C 0.157 3.843 20 N -0.741 5.741 21 C -0.246 4.246 22 H 0.070 0.930 23 C -0.069 4.069 24 N -0.965 5.965 25 Si 0.967 3.033 26 H -0.280 1.280 27 H -0.295 1.295 28 H -0.280 1.280 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.135 0.865 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.121 0.879 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.010 0.990 46 H 0.025 0.975 47 H 0.376 0.624 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.174 2.243 -18.593 20.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 H 0.084 0.916 4 C -0.002 4.002 5 N -0.333 5.333 6 C 0.332 3.668 7 O -0.438 6.438 8 C -0.176 4.176 9 C 0.220 3.780 10 F -0.190 7.190 11 F -0.175 7.175 12 C -0.147 4.147 13 C -0.169 4.169 14 C -0.151 4.151 15 C -0.025 4.025 16 C -0.156 4.156 17 C -0.098 4.098 18 H 0.090 0.910 19 C 0.031 3.969 20 N -0.384 5.384 21 C -0.378 4.378 22 H 0.088 0.912 23 C -0.262 4.262 24 N -0.616 5.616 25 Si 0.796 3.204 26 H -0.207 1.207 27 H -0.221 1.221 28 H -0.206 1.206 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.151 0.849 35 H 0.091 0.909 36 H 0.124 0.876 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.139 0.861 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.119 0.881 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.028 0.972 46 H 0.043 0.957 47 H 0.209 0.791 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.839 2.638 -18.994 20.360 hybrid contribution -0.158 -0.172 1.148 1.172 sum 6.681 2.467 -17.846 19.215 Atomic orbital electron populations 1.21800 0.93442 1.02659 1.02308 1.21262 0.96852 0.99275 0.93224 0.91612 1.21669 0.78182 1.01773 0.98595 1.48154 1.07352 1.59938 1.17878 1.19682 0.87420 0.77873 0.81776 1.90672 1.75061 1.42557 1.35532 1.23257 0.93694 0.94989 1.05616 1.21973 0.80993 0.92201 0.82829 1.92989 1.95415 1.84006 1.46576 1.92982 1.37477 1.96629 1.90417 1.22804 0.99814 0.95945 0.96169 1.22763 1.03522 0.96081 0.94527 1.23150 1.01304 0.94639 0.96044 1.22184 0.98931 0.98259 0.83093 1.21802 0.95399 1.01078 0.97341 1.21231 0.95249 0.99827 0.93506 0.91009 1.20874 0.96745 0.93580 0.85737 1.42523 1.65251 1.29131 1.01470 1.19549 1.26922 1.06021 0.85318 0.91199 1.25438 1.01622 0.97979 1.01140 1.69772 1.44198 1.18435 1.29170 0.85312 0.77836 0.77155 0.80059 1.20679 1.22101 1.20623 0.92530 0.91310 0.91942 0.89515 0.89745 0.84852 0.90854 0.87616 0.88434 0.90969 0.86080 0.89962 0.88999 0.88127 0.91003 0.91950 0.97194 0.95715 0.79094 0.94010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.82 71.98 0.64 -2.45 16 2 C -0.09 -2.00 2.40 -10.86 -0.03 -2.02 16 3 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 4 C 0.12 2.56 5.70 86.22 0.49 3.05 16 5 N -0.60 -12.84 2.98 -819.73 -2.44 -15.28 16 6 C 0.55 12.96 6.45 87.66 0.57 13.52 16 7 O -0.56 -16.98 15.30 -3.03 -0.05 -17.02 16 8 C -0.17 -3.25 0.45 -52.34 -0.02 -3.27 16 9 C 0.27 4.92 4.24 71.98 0.31 5.22 16 10 F -0.21 -4.63 17.09 44.97 0.77 -3.86 16 11 F -0.19 -3.51 15.86 44.97 0.71 -2.79 16 12 C -0.11 -2.01 6.77 31.12 0.21 -1.80 16 13 C -0.13 -2.13 7.80 31.12 0.24 -1.89 16 14 C -0.11 -1.79 5.88 31.18 0.18 -1.61 16 15 C 0.10 1.86 4.36 86.36 0.38 2.24 16 16 C -0.12 -3.01 5.25 30.67 0.16 -2.85 16 17 C -0.08 -2.20 1.73 -10.76 -0.02 -2.22 16 18 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 19 C 0.16 5.83 5.41 86.38 0.47 6.30 16 20 N -0.74 -35.48 5.32 -343.46 -1.83 -37.30 16 21 C -0.25 -13.35 9.99 84.03 0.84 -12.51 16 22 H 0.07 3.69 7.83 -2.91 -0.02 3.66 16 23 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 24 N -0.97 -56.78 13.06 21.65 0.28 -56.50 16 25 Si 0.97 45.03 29.55 68.60 2.03 47.06 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 27 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 28 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 29 H 0.06 1.36 6.29 -2.39 -0.02 1.34 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 2.01 7.00 -2.39 -0.02 1.99 16 33 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.13 1.95 5.33 -2.39 -0.01 1.93 16 35 H 0.07 1.61 7.36 -2.39 -0.02 1.59 16 36 H 0.11 1.66 8.07 -2.39 -0.02 1.64 16 37 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.12 1.59 7.02 -2.38 -0.02 1.57 16 40 H 0.08 1.37 7.45 -2.39 -0.02 1.35 16 41 H 0.09 1.53 8.02 -2.39 -0.02 1.51 16 42 H 0.10 1.59 4.02 -2.39 -0.01 1.58 16 43 H 0.07 2.18 7.15 -2.39 -0.02 2.16 16 44 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.03 0.94 6.14 -2.39 -0.01 0.92 16 47 H 0.38 18.81 6.85 -92.71 -0.63 18.18 16 48 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -65.73 371.34 4.70 -61.03 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 0.34 Total: 28.36 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 4.88 Total: -3.69 kcal Atomic # 7 Polarization: -105.10 SS G_CDS: -3.98 Total: -109.09 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.05 Total: -17.02 kcal Atomic # 9 Polarization: -8.13 SS G_CDS: 1.48 Total: -6.65 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -65.73 4.70 -61.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184992386.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.117 kcal (2) G-P(sol) polarization free energy of solvation -65.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds