Wall clock time and date at job start Tue Mar 31 2020 17:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.49925 * 2 1 4 4 C 1.53192 * 109.49864 * 120.09900 * 2 1 3 5 5 N 1.46925 * 108.77562 * 174.58487 * 4 2 1 6 6 C 1.34781 * 120.63054 * 126.40891 * 5 4 2 7 7 O 1.21283 * 119.99829 * 355.01954 * 6 5 4 8 8 C 1.50697 * 119.99834 * 175.00895 * 6 5 4 9 9 C 1.52993 * 112.85544 * 288.31206 * 8 6 5 10 10 F 1.39900 * 109.46993 * 64.90250 * 9 8 6 11 11 F 1.39899 * 109.47692 * 184.89850 * 9 8 6 12 12 C 1.53786 * 113.61091 * 157.00662 * 8 6 5 13 13 C 1.53782 * 87.08296 * 220.02107 * 12 8 6 14 14 C 1.53782 * 113.61174 * 59.51479 * 8 6 5 15 15 C 1.46925 * 118.74241 * 306.39233 * 5 4 2 16 16 C 1.53192 * 108.77280 * 53.60616 * 15 5 4 17 17 C 1.53038 * 109.31223 * 305.36574 * 16 15 5 18 18 H 1.08995 * 109.45113 * 301.35023 * 17 16 15 19 19 C 1.53010 * 109.45763 * 181.38775 * 17 16 15 20 20 N 1.46496 * 109.47057 * 64.93311 * 19 17 16 21 21 C 1.36934 * 120.00079 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99905 * 359.97438 * 21 20 19 23 23 C 1.38809 * 120.00378 * 180.02562 * 21 20 19 24 24 N 1.31622 * 120.00509 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99917 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.46797 * 90.00525 * 25 23 21 27 27 H 1.48492 * 109.47441 * 210.00302 * 25 23 21 28 28 H 1.48494 * 109.47089 * 330.00824 * 25 23 21 29 29 H 1.08996 * 109.47264 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46988 * 300.06700 * 1 2 3 31 31 H 1.09003 * 109.46819 * 60.06222 * 1 2 3 32 32 H 1.08997 * 109.58263 * 294.36950 * 4 2 1 33 33 H 1.09003 * 109.58710 * 54.65557 * 4 2 1 34 34 H 1.08999 * 109.47672 * 304.90745 * 9 8 6 35 35 H 1.09002 * 113.61678 * 334.57010 * 12 8 6 36 36 H 1.08998 * 113.61399 * 105.47288 * 12 8 6 37 37 H 1.08996 * 113.61232 * 270.88812 * 13 12 8 38 38 H 1.08998 * 113.69043 * 139.98948 * 13 12 8 39 39 H 1.08996 * 113.61504 * 254.51999 * 14 8 6 40 40 H 1.08995 * 113.61942 * 25.42971 * 14 8 6 41 41 H 1.08997 * 109.58818 * 173.39713 * 15 5 4 42 42 H 1.08998 * 109.58144 * 293.67908 * 15 5 4 43 43 H 1.09006 * 109.49439 * 185.41756 * 16 15 5 44 44 H 1.08995 * 109.49812 * 65.32169 * 16 15 5 45 45 H 1.09004 * 109.46637 * 304.93576 * 19 17 16 46 46 H 1.09003 * 109.46950 * 184.93524 * 19 17 16 47 47 H 0.96997 * 120.00344 * 0.02562 * 20 19 17 48 48 H 0.96994 * 120.00123 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7242 1.2493 5 7 3.5046 -0.8295 1.1693 6 6 4.2812 -0.3870 2.1781 7 8 3.7802 0.1850 3.1230 8 6 5.7718 -0.6032 2.1321 9 6 6.1674 -2.0645 2.3529 10 9 5.6838 -2.8434 1.2962 11 9 7.5616 -2.1672 2.4077 12 6 6.5652 0.3894 2.9983 13 6 7.5952 0.4404 1.8575 14 6 6.4503 0.0410 0.9116 15 6 4.1053 -1.4267 -0.0312 16 6 3.5708 -0.6946 -1.2662 17 6 2.0408 -0.7228 -1.2485 18 1 1.6969 -1.7570 -1.2357 19 6 1.5036 -0.0225 -2.4985 20 7 1.8930 -0.7820 -3.6891 21 6 1.5225 -0.3437 -4.9323 22 1 0.9428 0.5617 -5.0351 23 6 1.8910 -1.0636 -6.0605 24 7 1.5344 -0.6426 -7.2555 25 14 2.8930 -2.6301 -5.8828 26 1 1.9768 -3.7909 -5.7459 27 1 3.7455 -2.8115 -7.0850 28 1 3.7530 -2.5334 -4.6761 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5149 0.8894 31 1 -0.3633 0.5129 -0.8906 32 1 1.7638 -0.1585 2.1388 33 1 1.6033 -1.7211 1.2988 34 1 5.7399 -2.4190 3.2908 35 1 6.0488 1.3351 3.1629 36 1 6.9538 -0.0475 3.9181 37 1 8.3765 -0.3150 1.9405 38 1 7.9898 1.4386 1.6681 39 1 6.7462 -0.6771 0.1469 40 1 5.9025 0.8914 0.5057 41 1 5.1896 -1.3246 0.0133 42 1 3.8396 -2.4824 -0.0861 43 1 3.9334 -1.1891 -2.1675 44 1 3.9159 0.3392 -1.2540 45 1 1.9185 0.9838 -2.5576 46 1 0.4165 0.0352 -2.4437 47 1 2.4134 -1.5954 -3.5968 48 1 1.7922 -1.1455 -8.0438 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184992387.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:13 Heat of formation + Delta-G solvation = -98.907922 kcal Electronic energy + Delta-G solvation = -30660.725907 eV Core-core repulsion = 26387.468731 eV Total energy + Delta-G solvation = -4273.257176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.52210 -47.45557 -41.04228 -38.89706 -37.56096 -35.20242 -33.66986 -32.07321 -30.73378 -29.46080 -27.32122 -27.02305 -26.00299 -24.49573 -23.57393 -22.56614 -21.34323 -20.61389 -19.99643 -19.14169 -18.23989 -17.69625 -17.59768 -17.39281 -16.36780 -16.08401 -15.31667 -15.00800 -14.86232 -14.50949 -14.34670 -14.25095 -14.12698 -13.73793 -13.58674 -13.40578 -13.17623 -12.93978 -12.87542 -12.83074 -12.57365 -12.44131 -12.22961 -11.97462 -11.85591 -11.66841 -11.54402 -11.34123 -11.00589 -10.90521 -10.84465 -10.69271 -10.52568 -10.29824 -10.16425 -10.08329 -9.82744 -9.58679 -8.89975 -8.72354 -7.22342 -5.77539 -3.12683 2.16201 2.69841 3.33276 3.34758 3.37803 3.43894 3.59276 3.74680 3.79506 4.18176 4.32634 4.53420 4.57787 4.63747 4.71060 4.78830 4.86615 4.93329 5.03011 5.19974 5.27580 5.30456 5.38514 5.45922 5.48086 5.52554 5.56360 5.58735 5.60559 5.67427 5.72215 5.76521 5.84462 5.88519 5.94800 6.10979 6.15879 6.19802 6.32654 6.37115 6.44584 6.72510 6.80440 7.18306 7.86683 7.99228 8.41677 9.21023 9.93354 10.13399 11.41103 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.014368 B = 0.003674 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.364089 B = 7620.292399 C = 8700.199007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 H 0.074 0.926 4 C 0.116 3.884 5 N -0.597 5.597 6 C 0.534 3.466 7 O -0.536 6.536 8 C -0.171 4.171 9 C 0.294 3.706 10 F -0.192 7.192 11 F -0.192 7.192 12 C -0.098 4.098 13 C -0.148 4.148 14 C -0.121 4.121 15 C 0.092 3.908 16 C -0.129 4.129 17 C -0.093 4.093 18 H 0.072 0.928 19 C 0.161 3.839 20 N -0.755 5.755 21 C -0.243 4.243 22 H 0.089 0.911 23 C 0.004 3.996 24 N -0.935 5.935 25 Si 0.884 3.116 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.277 1.277 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.117 0.883 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.024 0.976 46 H 0.033 0.967 47 H 0.360 0.640 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.993 -1.398 23.563 25.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 H 0.093 0.907 4 C -0.006 4.006 5 N -0.329 5.329 6 C 0.320 3.680 7 O -0.413 6.413 8 C -0.175 4.175 9 C 0.240 3.760 10 F -0.173 7.173 11 F -0.174 7.174 12 C -0.136 4.136 13 C -0.185 4.185 14 C -0.159 4.159 15 C -0.030 4.030 16 C -0.167 4.167 17 C -0.112 4.112 18 H 0.090 0.910 19 C 0.034 3.966 20 N -0.401 5.401 21 C -0.373 4.373 22 H 0.107 0.893 23 C -0.192 4.192 24 N -0.583 5.583 25 Si 0.714 3.286 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.203 1.203 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.134 0.866 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.050 0.950 47 H 0.193 0.807 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.632 -0.985 23.850 25.740 hybrid contribution 0.682 -1.313 -0.338 1.518 sum 10.314 -2.298 23.512 25.778 Atomic orbital electron populations 1.21841 0.94183 1.02245 1.02277 1.21431 0.96258 0.99938 0.93873 0.90733 1.21760 0.78431 1.01024 0.99396 1.48104 1.07041 1.59571 1.18136 1.19758 0.87085 0.78768 0.82366 1.90697 1.74568 1.41899 1.34159 1.23269 0.94393 0.95688 1.04115 1.21238 0.76047 0.88594 0.90115 1.93024 1.87502 1.76566 1.60213 1.92964 1.30886 1.96511 1.96991 1.22731 0.95288 0.98398 0.97149 1.23116 0.96962 1.03185 0.95264 1.23057 0.96885 1.01064 0.94868 1.22423 0.99364 0.97441 0.83768 1.21994 0.96143 1.01324 0.97267 1.21402 0.94721 1.00236 0.94877 0.91006 1.20734 0.97202 0.94072 0.84581 1.42727 1.66092 1.28675 1.02601 1.19062 1.28339 1.07932 0.81945 0.89309 1.24667 1.00714 0.98686 0.95106 1.69700 1.50966 1.40610 0.97050 0.86561 0.80445 0.84727 0.76837 1.21110 1.21750 1.20348 0.92490 0.92879 0.91125 0.89110 0.91298 0.86570 0.88124 0.90245 0.88428 0.90422 0.89532 0.88341 0.88514 0.90868 0.89871 0.91487 0.95783 0.94962 0.80736 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.82 37.16 0.33 -1.34 16 2 C -0.10 -1.16 2.41 -90.50 -0.22 -1.38 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.12 1.32 5.72 -3.71 -0.02 1.30 16 5 N -0.60 -6.88 2.97 -172.77 -0.51 -7.40 16 6 C 0.53 6.30 6.64 -10.98 -0.07 6.23 16 7 O -0.54 -7.80 15.72 5.55 0.09 -7.71 16 8 C -0.17 -1.56 0.70 -154.85 -0.11 -1.67 16 9 C 0.29 2.48 4.75 37.15 0.18 2.65 16 10 F -0.19 -1.90 13.45 2.25 0.03 -1.87 16 11 F -0.19 -1.67 14.56 2.25 0.03 -1.64 16 12 C -0.10 -0.79 6.69 -25.92 -0.17 -0.96 16 13 C -0.15 -1.08 7.56 -25.91 -0.20 -1.28 16 14 C -0.12 -1.04 5.27 -25.91 -0.14 -1.18 16 15 C 0.09 1.04 4.27 -3.71 -0.02 1.03 16 16 C -0.13 -1.75 5.25 -26.61 -0.14 -1.89 16 17 C -0.09 -1.34 1.73 -90.57 -0.16 -1.49 16 18 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 19 C 0.16 2.99 5.41 -4.04 -0.02 2.97 16 20 N -0.76 -17.47 5.12 -59.91 -0.31 -17.77 16 21 C -0.24 -6.82 10.47 -15.06 -0.16 -6.98 16 22 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 23 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 24 N -0.94 -29.32 13.97 55.49 0.78 -28.54 16 25 Si 0.88 21.84 27.74 -169.99 -4.71 17.13 16 26 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.88 6.30 -51.93 -0.33 0.55 16 32 H 0.09 1.09 7.00 -51.93 -0.36 0.73 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.12 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.90 7.84 -51.93 -0.41 0.49 16 36 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 37 H 0.10 0.71 6.38 -51.93 -0.33 0.38 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.74 6.87 -51.93 -0.36 0.39 16 40 H 0.10 0.89 8.09 -51.93 -0.42 0.47 16 41 H 0.10 1.00 2.59 -51.93 -0.13 0.87 16 42 H 0.07 0.83 7.70 -51.93 -0.40 0.43 16 43 H 0.08 1.27 7.15 -51.93 -0.37 0.90 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.03 0.61 6.14 -51.93 -0.32 0.29 16 47 H 0.36 8.07 4.71 -40.82 -0.19 7.88 16 48 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 363.97 15.07 5.48 5.48 Total: -1.00 -32.29 363.97 -7.57 -39.86 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -7.44 Total: 6.45 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -1.01 Total: -3.98 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.05 Total: -53.71 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.09 Total: -7.71 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.06 Total: -3.51 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.13 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.29 -7.57 -39.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184992387.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.044 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds