Wall clock time and date at job start Tue Mar 31 2020 17:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.49925 * 2 1 4 4 C 1.53192 * 109.49864 * 120.09900 * 2 1 3 5 5 N 1.46925 * 108.77562 * 174.58487 * 4 2 1 6 6 C 1.34781 * 120.63054 * 126.40891 * 5 4 2 7 7 O 1.21283 * 119.99829 * 355.01954 * 6 5 4 8 8 C 1.50697 * 119.99834 * 175.00895 * 6 5 4 9 9 C 1.52993 * 112.85544 * 288.31206 * 8 6 5 10 10 F 1.39900 * 109.46993 * 64.90250 * 9 8 6 11 11 F 1.39899 * 109.47692 * 184.89850 * 9 8 6 12 12 C 1.53786 * 113.61091 * 157.00662 * 8 6 5 13 13 C 1.53782 * 87.08296 * 220.02107 * 12 8 6 14 14 C 1.53782 * 113.61174 * 59.51479 * 8 6 5 15 15 C 1.46925 * 118.74241 * 306.39233 * 5 4 2 16 16 C 1.53192 * 108.77280 * 53.60616 * 15 5 4 17 17 C 1.53038 * 109.31223 * 305.36574 * 16 15 5 18 18 H 1.08995 * 109.45113 * 301.35023 * 17 16 15 19 19 C 1.53010 * 109.45763 * 181.38775 * 17 16 15 20 20 N 1.46496 * 109.47057 * 64.93311 * 19 17 16 21 21 C 1.36934 * 120.00079 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99905 * 359.97438 * 21 20 19 23 23 C 1.38809 * 120.00378 * 180.02562 * 21 20 19 24 24 N 1.31622 * 120.00509 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99917 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.46797 * 90.00525 * 25 23 21 27 27 H 1.48492 * 109.47441 * 210.00302 * 25 23 21 28 28 H 1.48494 * 109.47089 * 330.00824 * 25 23 21 29 29 H 1.08996 * 109.47264 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46988 * 300.06700 * 1 2 3 31 31 H 1.09003 * 109.46819 * 60.06222 * 1 2 3 32 32 H 1.08997 * 109.58263 * 294.36950 * 4 2 1 33 33 H 1.09003 * 109.58710 * 54.65557 * 4 2 1 34 34 H 1.08999 * 109.47672 * 304.90745 * 9 8 6 35 35 H 1.09002 * 113.61678 * 334.57010 * 12 8 6 36 36 H 1.08998 * 113.61399 * 105.47288 * 12 8 6 37 37 H 1.08996 * 113.61232 * 270.88812 * 13 12 8 38 38 H 1.08998 * 113.69043 * 139.98948 * 13 12 8 39 39 H 1.08996 * 113.61504 * 254.51999 * 14 8 6 40 40 H 1.08995 * 113.61942 * 25.42971 * 14 8 6 41 41 H 1.08997 * 109.58818 * 173.39713 * 15 5 4 42 42 H 1.08998 * 109.58144 * 293.67908 * 15 5 4 43 43 H 1.09006 * 109.49439 * 185.41756 * 16 15 5 44 44 H 1.08995 * 109.49812 * 65.32169 * 16 15 5 45 45 H 1.09004 * 109.46637 * 304.93576 * 19 17 16 46 46 H 1.09003 * 109.46950 * 184.93524 * 19 17 16 47 47 H 0.96997 * 120.00344 * 0.02562 * 20 19 17 48 48 H 0.96994 * 120.00123 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7242 1.2493 5 7 3.5046 -0.8295 1.1693 6 6 4.2812 -0.3870 2.1781 7 8 3.7802 0.1850 3.1230 8 6 5.7718 -0.6032 2.1321 9 6 6.1674 -2.0645 2.3529 10 9 5.6838 -2.8434 1.2962 11 9 7.5616 -2.1672 2.4077 12 6 6.5652 0.3894 2.9983 13 6 7.5952 0.4404 1.8575 14 6 6.4503 0.0410 0.9116 15 6 4.1053 -1.4267 -0.0312 16 6 3.5708 -0.6946 -1.2662 17 6 2.0408 -0.7228 -1.2485 18 1 1.6969 -1.7570 -1.2357 19 6 1.5036 -0.0225 -2.4985 20 7 1.8930 -0.7820 -3.6891 21 6 1.5225 -0.3437 -4.9323 22 1 0.9428 0.5617 -5.0351 23 6 1.8910 -1.0636 -6.0605 24 7 1.5344 -0.6426 -7.2555 25 14 2.8930 -2.6301 -5.8828 26 1 1.9768 -3.7909 -5.7459 27 1 3.7455 -2.8115 -7.0850 28 1 3.7530 -2.5334 -4.6761 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5149 0.8894 31 1 -0.3633 0.5129 -0.8906 32 1 1.7638 -0.1585 2.1388 33 1 1.6033 -1.7211 1.2988 34 1 5.7399 -2.4190 3.2908 35 1 6.0488 1.3351 3.1629 36 1 6.9538 -0.0475 3.9181 37 1 8.3765 -0.3150 1.9405 38 1 7.9898 1.4386 1.6681 39 1 6.7462 -0.6771 0.1469 40 1 5.9025 0.8914 0.5057 41 1 5.1896 -1.3246 0.0133 42 1 3.8396 -2.4824 -0.0861 43 1 3.9334 -1.1891 -2.1675 44 1 3.9159 0.3392 -1.2540 45 1 1.9185 0.9838 -2.5576 46 1 0.4165 0.0352 -2.4437 47 1 2.4134 -1.5954 -3.5968 48 1 1.7922 -1.1455 -8.0438 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184992387.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:12 Heat of formation + Delta-G solvation = -118.129326 kcal Electronic energy + Delta-G solvation = -30661.559409 eV Core-core repulsion = 26387.468731 eV Total energy + Delta-G solvation = -4274.090679 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.18923 -48.12744 -41.91637 -39.86726 -38.48846 -36.72291 -35.02233 -33.60931 -32.37217 -30.20847 -28.63459 -27.98460 -26.70505 -25.57347 -24.83920 -23.82292 -22.71923 -21.53906 -21.00603 -19.97748 -19.64324 -18.96772 -18.36216 -18.15812 -17.30176 -16.84612 -16.67304 -16.27101 -15.91524 -15.75128 -15.56361 -15.33093 -14.96525 -14.90912 -14.54708 -14.52525 -14.38295 -14.23034 -13.87051 -13.79605 -13.50592 -13.35951 -13.22553 -13.11219 -12.96121 -12.89737 -12.73195 -12.51361 -12.30900 -12.15646 -11.97907 -11.85156 -11.66711 -11.63921 -11.36786 -11.25176 -11.21766 -10.95128 -10.73648 -9.71101 -9.27011 -8.02197 -5.35513 1.28205 1.37761 1.42178 1.49536 1.81684 2.49178 2.65288 2.90942 3.04212 3.13899 3.29335 3.44016 3.52695 3.69159 3.73952 3.78233 3.91442 3.98242 4.01233 4.05346 4.20371 4.30286 4.41926 4.48003 4.59853 4.63205 4.64257 4.66725 4.73821 4.77717 4.83718 4.86901 4.95346 4.98756 5.04080 5.05906 5.08591 5.17485 5.22993 5.32727 5.35422 5.45949 5.55903 5.76428 6.21726 6.26271 6.95243 7.09061 7.85033 8.05270 9.19654 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.014368 B = 0.003674 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.364089 B = 7620.292399 C = 8700.199007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.065 0.935 4 C 0.119 3.881 5 N -0.598 5.598 6 C 0.533 3.467 7 O -0.566 6.566 8 C -0.170 4.170 9 C 0.295 3.705 10 F -0.200 7.200 11 F -0.192 7.192 12 C -0.096 4.096 13 C -0.138 4.138 14 C -0.125 4.125 15 C 0.101 3.899 16 C -0.127 4.127 17 C -0.083 4.083 18 H 0.077 0.923 19 C 0.160 3.840 20 N -0.755 5.755 21 C -0.235 4.235 22 H 0.052 0.948 23 C -0.064 4.064 24 N -0.986 5.986 25 Si 0.954 3.046 26 H -0.278 1.278 27 H -0.297 1.297 28 H -0.245 1.245 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.138 0.862 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.014 0.986 46 H 0.031 0.969 47 H 0.367 0.633 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.504 -3.086 25.808 28.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 H 0.083 0.917 4 C -0.003 4.003 5 N -0.328 5.328 6 C 0.321 3.679 7 O -0.445 6.445 8 C -0.174 4.174 9 C 0.241 3.759 10 F -0.181 7.181 11 F -0.174 7.174 12 C -0.134 4.134 13 C -0.175 4.175 14 C -0.163 4.163 15 C -0.021 4.021 16 C -0.165 4.165 17 C -0.102 4.102 18 H 0.095 0.905 19 C 0.034 3.966 20 N -0.401 5.401 21 C -0.366 4.366 22 H 0.070 0.930 23 C -0.255 4.255 24 N -0.637 5.637 25 Si 0.781 3.219 26 H -0.204 1.204 27 H -0.223 1.223 28 H -0.170 1.170 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.156 0.844 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.121 0.879 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.127 0.873 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.032 0.968 46 H 0.049 0.951 47 H 0.200 0.800 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.148 -2.669 26.146 28.549 hybrid contribution 0.132 -0.654 -1.028 1.225 sum 11.280 -3.323 25.119 27.735 Atomic orbital electron populations 1.21812 0.93436 1.02755 1.02298 1.21330 0.96834 0.99210 0.93234 0.91685 1.21735 0.78563 1.01589 0.98430 1.48161 1.07146 1.59349 1.18178 1.20154 0.88058 0.77903 0.81761 1.90684 1.75367 1.43176 1.35258 1.23314 0.92536 0.96718 1.04866 1.21386 0.76058 0.87834 0.90654 1.93002 1.87625 1.76705 1.60791 1.92965 1.30946 1.96447 1.96993 1.22727 0.95140 0.97675 0.97880 1.23070 0.96471 1.03820 0.94134 1.23078 0.97376 1.00856 0.94946 1.22376 0.99951 0.97281 0.82489 1.21937 0.95380 1.01281 0.97887 1.21301 0.95331 1.00094 0.93500 0.90459 1.20873 0.97180 0.93637 0.84948 1.42690 1.66014 1.29216 1.02140 1.19030 1.26971 1.06466 0.84173 0.92982 1.25525 1.02649 1.02804 0.94546 1.69893 1.53083 1.42616 0.98079 0.85419 0.78994 0.79749 0.77718 1.20415 1.22348 1.16965 0.91732 0.91266 0.92704 0.89438 0.89835 0.84435 0.89204 0.89006 0.87920 0.89581 0.89345 0.89110 0.87331 0.90132 0.91234 0.91964 0.96805 0.95140 0.79960 0.93350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.82 71.98 0.63 -2.44 16 2 C -0.09 -1.97 2.41 -10.72 -0.03 -2.00 16 3 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 4 C 0.12 2.46 5.72 86.36 0.49 2.96 16 5 N -0.60 -12.54 2.97 -818.91 -2.43 -14.98 16 6 C 0.53 11.63 6.64 87.66 0.58 12.21 16 7 O -0.57 -15.70 15.72 -3.04 -0.05 -15.75 16 8 C -0.17 -2.76 0.70 -52.40 -0.04 -2.79 16 9 C 0.29 4.15 4.75 71.98 0.34 4.49 16 10 F -0.20 -3.39 13.45 44.97 0.61 -2.79 16 11 F -0.19 -2.80 14.56 44.97 0.65 -2.15 16 12 C -0.10 -1.37 6.69 31.12 0.21 -1.16 16 13 C -0.14 -1.71 7.56 31.12 0.24 -1.48 16 14 C -0.13 -1.91 5.27 31.12 0.16 -1.75 16 15 C 0.10 2.05 4.27 86.36 0.37 2.42 16 16 C -0.13 -3.21 5.25 30.67 0.16 -3.05 16 17 C -0.08 -2.26 1.73 -10.76 -0.02 -2.28 16 18 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 19 C 0.16 5.88 5.41 86.38 0.47 6.34 16 20 N -0.75 -34.47 5.12 -343.44 -1.76 -36.23 16 21 C -0.24 -13.45 10.47 84.03 0.88 -12.57 16 22 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 23 C -0.06 -3.76 5.50 84.86 0.47 -3.30 16 24 N -0.99 -63.40 13.97 21.65 0.30 -63.10 16 25 Si 0.95 44.66 27.74 68.60 1.90 46.56 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 27 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 28 H -0.25 -10.07 6.52 99.48 0.65 -9.43 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.05 1.33 6.30 -2.39 -0.02 1.32 16 32 H 0.09 1.94 7.00 -2.39 -0.02 1.92 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 1.50 7.84 -2.39 -0.02 1.48 16 36 H 0.09 1.07 8.10 -2.39 -0.02 1.05 16 37 H 0.10 1.21 6.38 -2.39 -0.02 1.20 16 38 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.09 1.32 6.87 -2.39 -0.02 1.30 16 40 H 0.09 1.53 8.09 -2.39 -0.02 1.51 16 41 H 0.11 1.98 2.59 -2.39 -0.01 1.98 16 42 H 0.08 1.58 7.70 -2.39 -0.02 1.56 16 43 H 0.07 1.98 7.15 -2.38 -0.02 1.96 16 44 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 46 H 0.03 1.15 6.14 -2.39 -0.01 1.14 16 47 H 0.37 15.72 4.71 -92.71 -0.44 15.28 16 48 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -70.27 363.97 4.63 -65.64 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.48 Total: 27.17 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 4.92 Total: -4.38 kcal Atomic # 7 Polarization: -110.42 SS G_CDS: -3.89 Total: -114.31 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.05 Total: -15.75 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 1.26 Total: -4.94 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.90 Total: 46.56 kcal Total: -70.27 4.63 -65.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184992387.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.486 kcal (2) G-P(sol) polarization free energy of solvation -70.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds