Wall clock time and date at job start Tue Mar 31 2020 17:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.52508 * 2 1 4 4 C 1.53192 * 109.49787 * 120.08696 * 2 1 3 5 5 N 1.46918 * 108.77655 * 65.31540 * 4 2 1 6 6 C 1.34780 * 120.62913 * 233.62781 * 5 4 2 7 7 O 1.21281 * 120.00373 * 355.84444 * 6 5 4 8 8 C 1.50706 * 119.99854 * 175.84109 * 6 5 4 9 9 C 1.52999 * 112.84957 * 65.67377 * 8 6 5 10 10 F 1.39897 * 109.46866 * 65.42363 * 9 8 6 11 11 F 1.39898 * 109.47059 * 185.42150 * 9 8 6 12 12 C 1.53783 * 113.61273 * 294.36886 * 8 6 5 13 13 C 1.53781 * 87.07976 * 220.01604 * 12 8 6 14 14 C 1.53779 * 87.08202 * 25.43520 * 13 12 8 15 15 C 1.46926 * 118.74235 * 53.61227 * 5 4 2 16 16 C 1.53194 * 108.76429 * 306.38216 * 15 5 4 17 17 C 1.53042 * 109.31055 * 54.65131 * 16 15 5 18 18 H 1.09000 * 109.46279 * 58.63034 * 17 16 15 19 19 C 1.53000 * 109.46186 * 178.60179 * 17 16 15 20 20 N 1.46500 * 109.47333 * 295.03061 * 19 17 16 21 21 C 1.36938 * 120.00268 * 179.97438 * 20 19 17 22 22 H 1.07997 * 119.99468 * 0.02562 * 21 20 19 23 23 C 1.38810 * 119.99888 * 179.97438 * 21 20 19 24 24 N 1.31621 * 120.00335 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99833 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46799 * 90.00476 * 25 23 21 27 27 H 1.48501 * 109.47183 * 210.00373 * 25 23 21 28 28 H 1.48499 * 109.47342 * 330.00630 * 25 23 21 29 29 H 1.08998 * 109.46739 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46797 * 300.07623 * 1 2 3 31 31 H 1.09002 * 109.47226 * 60.07807 * 1 2 3 32 32 H 1.09008 * 109.58713 * 185.10582 * 4 2 1 33 33 H 1.09005 * 109.58439 * 305.38317 * 4 2 1 34 34 H 1.08999 * 109.47378 * 305.42801 * 9 8 6 35 35 H 1.08993 * 113.61961 * 334.56608 * 12 8 6 36 36 H 1.09001 * 113.61319 * 105.47073 * 12 8 6 37 37 H 1.08990 * 113.62061 * 270.88620 * 13 12 8 38 38 H 1.09004 * 113.68990 * 139.98861 * 13 12 8 39 39 H 1.08999 * 113.61831 * 220.01961 * 14 13 12 40 40 H 1.09001 * 113.69411 * 89.11951 * 14 13 12 41 41 H 1.09000 * 109.58966 * 66.17156 * 15 5 4 42 42 H 1.08995 * 109.59257 * 186.46151 * 15 5 4 43 43 H 1.09000 * 109.51191 * 294.70021 * 16 15 5 44 44 H 1.08996 * 109.49336 * 174.59872 * 16 15 5 45 45 H 1.08998 * 109.47490 * 175.02741 * 19 17 16 46 46 H 1.09004 * 109.47046 * 55.02738 * 19 17 16 47 47 H 0.97004 * 119.99688 * 0.02562 * 20 19 17 48 48 H 0.96992 * 120.00071 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 1.2495 5 7 1.6515 -2.1382 1.1694 6 6 0.9740 -2.7219 2.1777 7 8 0.7462 -2.1014 3.1945 8 6 0.4996 -4.1459 2.0418 9 6 1.6507 -5.1503 1.9584 10 9 2.3527 -5.1564 3.1685 11 9 1.1377 -6.4280 1.7105 12 6 -0.5682 -4.3379 0.9518 13 6 -1.2705 -5.3039 1.9206 14 6 -0.5842 -4.5341 3.0614 15 6 2.0140 -2.9040 -0.0310 16 6 1.5028 -2.1557 -1.2660 17 6 2.0408 -0.7231 -1.2484 18 1 3.1305 -0.7445 -1.2352 19 6 1.5607 0.0172 -2.4984 20 7 2.1473 -0.6033 -3.6889 21 6 1.8585 -0.1074 -4.9322 22 1 1.1986 0.7413 -5.0351 23 6 2.4147 -0.6951 -6.0601 24 7 3.2193 -1.7291 -5.9346 25 14 2.0201 -0.0191 -7.7563 26 1 3.0124 1.0256 -8.1158 27 1 2.0760 -1.1188 -8.7527 28 1 0.6584 0.5732 -7.7486 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5150 0.8893 31 1 -0.3634 0.5126 -0.8907 32 1 3.1275 -0.6464 1.2980 33 1 1.6027 -0.2716 2.1390 34 1 2.3235 -4.8656 1.1496 35 1 -1.1434 -3.4366 0.7404 36 1 -0.1904 -4.8213 0.0508 37 1 -0.9351 -6.3367 1.8272 38 1 -2.3565 -5.2100 1.9221 39 1 -0.2193 -5.1757 3.8634 40 1 -1.1628 -3.6861 3.4277 41 1 3.0979 -3.0043 -0.0870 42 1 1.5575 -3.8927 0.0146 43 1 0.4130 -2.1351 -1.2540 44 1 1.8476 -2.6627 -2.1671 45 1 1.8692 1.0612 -2.4434 46 1 0.4737 -0.0379 -2.5582 47 1 2.7397 -1.3658 -3.5964 48 1 3.6077 -2.1399 -6.7228 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184992388.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:17 Heat of formation + Delta-G solvation = -104.829318 kcal Electronic energy + Delta-G solvation = -30629.818973 eV Core-core repulsion = 26356.305026 eV Total energy + Delta-G solvation = -4273.513947 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.37368 -47.30700 -41.09461 -38.94762 -37.47530 -35.08751 -33.51928 -31.90307 -30.40376 -29.36471 -27.16576 -26.77085 -26.05849 -24.59371 -23.53471 -23.09500 -21.68223 -20.65650 -19.68438 -18.60622 -18.03708 -17.59156 -17.32055 -17.04331 -16.24314 -16.04068 -15.44391 -15.03828 -14.87265 -14.45251 -14.23962 -14.05473 -14.01368 -13.82971 -13.66503 -13.49758 -13.14549 -12.95971 -12.84672 -12.64834 -12.52747 -12.35995 -12.27151 -12.07859 -11.69067 -11.52546 -11.35763 -11.10988 -10.98498 -10.82516 -10.80421 -10.59551 -10.40441 -10.28896 -10.22798 -10.02463 -9.78909 -9.68421 -8.90095 -8.72000 -6.95121 -5.80981 -3.08993 2.26755 2.72983 3.31422 3.40605 3.46279 3.47431 3.69951 3.82176 3.90463 4.22580 4.40618 4.54725 4.58078 4.67221 4.71867 4.85716 4.93976 5.00126 5.01304 5.14449 5.30330 5.34258 5.41177 5.46866 5.55536 5.56410 5.64660 5.65492 5.68311 5.71525 5.76520 5.79258 5.96716 6.01748 6.02332 6.12691 6.21625 6.30251 6.38169 6.39360 6.58606 6.75233 6.87816 7.20243 7.66667 7.93232 8.38507 9.49830 10.07541 10.42005 11.41974 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.016966 B = 0.003153 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.935619 B = 8879.143803 C = 9563.465512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.083 0.917 4 C 0.117 3.883 5 N -0.600 5.600 6 C 0.537 3.463 7 O -0.530 6.530 8 C -0.171 4.171 9 C 0.285 3.715 10 F -0.196 7.196 11 F -0.193 7.193 12 C -0.113 4.113 13 C -0.148 4.148 14 C -0.103 4.103 15 C 0.093 3.907 16 C -0.126 4.126 17 C -0.089 4.089 18 H 0.072 0.928 19 C 0.159 3.841 20 N -0.732 5.732 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.934 5.934 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.017 0.983 46 H 0.022 0.978 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.487 -6.354 17.642 19.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 H 0.101 0.899 4 C -0.005 4.005 5 N -0.333 5.333 6 C 0.324 3.676 7 O -0.406 6.406 8 C -0.175 4.175 9 C 0.231 3.769 10 F -0.177 7.177 11 F -0.174 7.174 12 C -0.150 4.150 13 C -0.185 4.185 14 C -0.141 4.141 15 C -0.029 4.029 16 C -0.164 4.164 17 C -0.108 4.108 18 H 0.090 0.910 19 C 0.031 3.969 20 N -0.376 5.376 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.583 5.583 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.139 0.861 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.035 0.965 46 H 0.039 0.961 47 H 0.217 0.783 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.668 -5.945 18.075 19.854 hybrid contribution 0.211 0.050 -1.053 1.075 sum -5.457 -5.896 17.022 18.823 Atomic orbital electron populations 1.21865 0.94918 1.01858 1.01568 1.21480 0.96651 0.99572 0.94105 0.89883 1.21723 0.99666 0.79794 0.99314 1.48086 1.55266 1.11910 1.18022 1.19728 0.77613 0.87325 0.82982 1.90688 1.56450 1.64895 1.28604 1.23259 0.96401 0.93382 1.04447 1.21663 0.90290 0.79720 0.85185 1.93018 1.79694 1.96516 1.48439 1.92963 1.88087 1.41978 1.94342 1.22942 0.94881 1.01157 0.96027 1.23100 1.00658 0.99568 0.95151 1.22767 0.94535 1.00791 0.95975 1.22155 1.00739 0.95048 0.84992 1.21961 1.01521 0.96111 0.96797 1.21309 1.00335 0.94527 0.94583 0.90951 1.20707 0.95915 0.94667 0.85597 1.42375 1.56867 1.37540 1.00846 1.19222 1.23077 1.10855 0.83837 0.91301 1.24708 1.00042 0.98350 0.97786 1.69643 1.35696 1.24369 1.28593 0.86213 0.77822 0.77818 0.84481 1.21752 1.21770 1.20795 0.92700 0.93333 0.91841 0.91307 0.89096 0.86138 0.88381 0.89563 0.88441 0.90487 0.90440 0.88184 0.90673 0.90127 0.91103 0.89197 0.96479 0.96071 0.78329 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.38 37.16 0.31 -1.42 16 2 C -0.10 -1.17 2.72 -90.50 -0.25 -1.42 16 3 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 4 C 0.12 1.34 5.81 -3.72 -0.02 1.31 16 5 N -0.60 -6.77 2.41 -172.77 -0.42 -7.19 16 6 C 0.54 6.66 6.62 -10.98 -0.07 6.59 16 7 O -0.53 -8.27 15.58 5.56 0.09 -8.18 16 8 C -0.17 -1.72 0.47 -154.84 -0.07 -1.80 16 9 C 0.29 2.79 4.30 37.16 0.16 2.95 16 10 F -0.20 -2.34 17.20 2.25 0.04 -2.30 16 11 F -0.19 -1.90 14.56 2.25 0.03 -1.87 16 12 C -0.11 -0.97 5.88 -25.92 -0.15 -1.12 16 13 C -0.15 -1.19 7.56 -25.92 -0.20 -1.38 16 14 C -0.10 -1.00 6.79 -25.92 -0.18 -1.18 16 15 C 0.09 0.96 4.95 -3.71 -0.02 0.94 16 16 C -0.13 -1.62 4.91 -26.61 -0.13 -1.75 16 17 C -0.09 -1.25 1.96 -90.58 -0.18 -1.43 16 18 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 19 C 0.16 2.94 5.19 -4.04 -0.02 2.92 16 20 N -0.73 -17.41 5.32 -59.91 -0.32 -17.73 16 21 C -0.24 -6.46 9.99 -15.06 -0.15 -6.61 16 22 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -27.27 13.06 55.49 0.72 -26.54 16 25 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 29 H 0.05 0.67 5.97 -51.93 -0.31 0.36 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.80 6.58 -51.93 -0.34 0.46 16 32 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.09 1.11 7.04 -51.93 -0.37 0.75 16 34 H 0.12 0.97 5.47 -51.93 -0.28 0.68 16 35 H 0.10 0.87 8.09 -51.93 -0.42 0.45 16 36 H 0.09 0.67 7.30 -51.93 -0.38 0.30 16 37 H 0.10 0.78 6.39 -51.93 -0.33 0.45 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.76 8.08 -51.93 -0.42 0.35 16 40 H 0.10 1.04 7.71 -51.93 -0.40 0.64 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.70 3.30 -51.93 -0.17 0.53 16 43 H 0.07 0.92 6.33 -51.93 -0.33 0.59 16 44 H 0.09 1.35 7.15 -51.93 -0.37 0.98 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.02 0.40 6.74 -51.93 -0.35 0.06 16 47 H 0.38 9.45 6.85 -40.82 -0.28 9.17 16 48 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 366.16 15.07 5.52 5.52 Total: -1.00 -31.15 366.16 -7.68 -38.83 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -7.26 Total: 6.43 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -1.06 Total: -3.86 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: -0.01 Total: -51.46 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.09 Total: -8.18 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.07 Total: -4.17 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.15 -7.68 -38.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184992388.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.001 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds