Wall clock time and date at job start Tue Mar 31 2020 17:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.52508 * 2 1 4 4 C 1.53192 * 109.49787 * 120.08696 * 2 1 3 5 5 N 1.46918 * 108.77655 * 65.31540 * 4 2 1 6 6 C 1.34780 * 120.62913 * 233.62781 * 5 4 2 7 7 O 1.21281 * 120.00373 * 355.84444 * 6 5 4 8 8 C 1.50706 * 119.99854 * 175.84109 * 6 5 4 9 9 C 1.52999 * 112.84957 * 65.67377 * 8 6 5 10 10 F 1.39897 * 109.46866 * 65.42363 * 9 8 6 11 11 F 1.39898 * 109.47059 * 185.42150 * 9 8 6 12 12 C 1.53783 * 113.61273 * 294.36886 * 8 6 5 13 13 C 1.53781 * 87.07976 * 220.01604 * 12 8 6 14 14 C 1.53779 * 87.08202 * 25.43520 * 13 12 8 15 15 C 1.46926 * 118.74235 * 53.61227 * 5 4 2 16 16 C 1.53194 * 108.76429 * 306.38216 * 15 5 4 17 17 C 1.53042 * 109.31055 * 54.65131 * 16 15 5 18 18 H 1.09000 * 109.46279 * 58.63034 * 17 16 15 19 19 C 1.53000 * 109.46186 * 178.60179 * 17 16 15 20 20 N 1.46500 * 109.47333 * 295.03061 * 19 17 16 21 21 C 1.36938 * 120.00268 * 179.97438 * 20 19 17 22 22 H 1.07997 * 119.99468 * 0.02562 * 21 20 19 23 23 C 1.38810 * 119.99888 * 179.97438 * 21 20 19 24 24 N 1.31621 * 120.00335 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99833 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46799 * 90.00476 * 25 23 21 27 27 H 1.48501 * 109.47183 * 210.00373 * 25 23 21 28 28 H 1.48499 * 109.47342 * 330.00630 * 25 23 21 29 29 H 1.08998 * 109.46739 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46797 * 300.07623 * 1 2 3 31 31 H 1.09002 * 109.47226 * 60.07807 * 1 2 3 32 32 H 1.09008 * 109.58713 * 185.10582 * 4 2 1 33 33 H 1.09005 * 109.58439 * 305.38317 * 4 2 1 34 34 H 1.08999 * 109.47378 * 305.42801 * 9 8 6 35 35 H 1.08993 * 113.61961 * 334.56608 * 12 8 6 36 36 H 1.09001 * 113.61319 * 105.47073 * 12 8 6 37 37 H 1.08990 * 113.62061 * 270.88620 * 13 12 8 38 38 H 1.09004 * 113.68990 * 139.98861 * 13 12 8 39 39 H 1.08999 * 113.61831 * 220.01961 * 14 13 12 40 40 H 1.09001 * 113.69411 * 89.11951 * 14 13 12 41 41 H 1.09000 * 109.58966 * 66.17156 * 15 5 4 42 42 H 1.08995 * 109.59257 * 186.46151 * 15 5 4 43 43 H 1.09000 * 109.51191 * 294.70021 * 16 15 5 44 44 H 1.08996 * 109.49336 * 174.59872 * 16 15 5 45 45 H 1.08998 * 109.47490 * 175.02741 * 19 17 16 46 46 H 1.09004 * 109.47046 * 55.02738 * 19 17 16 47 47 H 0.97004 * 119.99688 * 0.02562 * 20 19 17 48 48 H 0.96992 * 120.00071 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 1.2495 5 7 1.6515 -2.1382 1.1694 6 6 0.9740 -2.7219 2.1777 7 8 0.7462 -2.1014 3.1945 8 6 0.4996 -4.1459 2.0418 9 6 1.6507 -5.1503 1.9584 10 9 2.3527 -5.1564 3.1685 11 9 1.1377 -6.4280 1.7105 12 6 -0.5682 -4.3379 0.9518 13 6 -1.2705 -5.3039 1.9206 14 6 -0.5842 -4.5341 3.0614 15 6 2.0140 -2.9040 -0.0310 16 6 1.5028 -2.1557 -1.2660 17 6 2.0408 -0.7231 -1.2484 18 1 3.1305 -0.7445 -1.2352 19 6 1.5607 0.0172 -2.4984 20 7 2.1473 -0.6033 -3.6889 21 6 1.8585 -0.1074 -4.9322 22 1 1.1986 0.7413 -5.0351 23 6 2.4147 -0.6951 -6.0601 24 7 3.2193 -1.7291 -5.9346 25 14 2.0201 -0.0191 -7.7563 26 1 3.0124 1.0256 -8.1158 27 1 2.0760 -1.1188 -8.7527 28 1 0.6584 0.5732 -7.7486 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5150 0.8893 31 1 -0.3634 0.5126 -0.8907 32 1 3.1275 -0.6464 1.2980 33 1 1.6027 -0.2716 2.1390 34 1 2.3235 -4.8656 1.1496 35 1 -1.1434 -3.4366 0.7404 36 1 -0.1904 -4.8213 0.0508 37 1 -0.9351 -6.3367 1.8272 38 1 -2.3565 -5.2100 1.9221 39 1 -0.2193 -5.1757 3.8634 40 1 -1.1628 -3.6861 3.4277 41 1 3.0979 -3.0043 -0.0870 42 1 1.5575 -3.8927 0.0146 43 1 0.4130 -2.1351 -1.2540 44 1 1.8476 -2.6627 -2.1671 45 1 1.8692 1.0612 -2.4434 46 1 0.4737 -0.0379 -2.5582 47 1 2.7397 -1.3658 -3.5964 48 1 3.6077 -2.1399 -6.7228 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184992388.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:15 Heat of formation + Delta-G solvation = -122.032295 kcal Electronic energy + Delta-G solvation = -30630.564950 eV Core-core repulsion = 26356.305026 eV Total energy + Delta-G solvation = -4274.259924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -50.17919 -48.12779 -42.02162 -39.92108 -38.44836 -36.59355 -34.90728 -33.26759 -31.97319 -30.18350 -28.52856 -27.77943 -26.80788 -25.81392 -24.95411 -24.11303 -22.98064 -21.64367 -20.49883 -19.75233 -19.13886 -18.69347 -18.41909 -18.11214 -17.21253 -16.88847 -16.75733 -16.36247 -15.82658 -15.62578 -15.47935 -15.33925 -15.11181 -14.90053 -14.73685 -14.44891 -14.39142 -14.07535 -13.85263 -13.75522 -13.57189 -13.44984 -13.15273 -12.98907 -12.89129 -12.78365 -12.66669 -12.43373 -12.23661 -12.16531 -12.03197 -11.89019 -11.59864 -11.51228 -11.39437 -11.23485 -11.19763 -10.87869 -10.74738 -9.70681 -8.93369 -7.92394 -5.19246 1.32655 1.49581 1.50002 1.58284 1.81289 2.52821 2.58321 2.95771 3.01636 3.11545 3.41556 3.44020 3.68120 3.72065 3.75874 3.80575 3.88304 3.94328 4.04650 4.19036 4.24546 4.35617 4.39758 4.46539 4.62367 4.66091 4.68617 4.72564 4.73955 4.80231 4.84220 4.89089 4.95252 4.99656 5.03618 5.09133 5.19272 5.20294 5.25469 5.31438 5.35634 5.49791 5.54814 5.62796 6.26069 6.31033 6.97533 7.38176 8.15070 8.38867 9.30812 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.016966 B = 0.003153 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.935619 B = 8879.143803 C = 9563.465512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 H 0.090 0.910 4 C 0.119 3.881 5 N -0.596 5.596 6 C 0.537 3.463 7 O -0.566 6.566 8 C -0.173 4.173 9 C 0.284 3.716 10 F -0.209 7.209 11 F -0.191 7.191 12 C -0.109 4.109 13 C -0.137 4.137 14 C -0.108 4.108 15 C 0.098 3.902 16 C -0.119 4.119 17 C -0.079 4.079 18 H 0.068 0.932 19 C 0.159 3.841 20 N -0.741 5.741 21 C -0.244 4.244 22 H 0.070 0.930 23 C -0.070 4.070 24 N -0.965 5.965 25 Si 0.966 3.034 26 H -0.290 1.290 27 H -0.295 1.295 28 H -0.272 1.272 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.142 0.858 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.012 0.988 46 H 0.021 0.979 47 H 0.376 0.624 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.974 -6.633 17.752 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 H 0.108 0.892 4 C -0.003 4.003 5 N -0.328 5.328 6 C 0.324 3.676 7 O -0.445 6.445 8 C -0.177 4.177 9 C 0.230 3.770 10 F -0.191 7.191 11 F -0.173 7.173 12 C -0.146 4.146 13 C -0.174 4.174 14 C -0.146 4.146 15 C -0.024 4.024 16 C -0.157 4.157 17 C -0.098 4.098 18 H 0.087 0.913 19 C 0.033 3.967 20 N -0.384 5.384 21 C -0.376 4.376 22 H 0.088 0.912 23 C -0.262 4.262 24 N -0.616 5.616 25 Si 0.796 3.204 26 H -0.217 1.217 27 H -0.222 1.222 28 H -0.197 1.197 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.159 0.841 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.119 0.881 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.030 0.970 46 H 0.039 0.961 47 H 0.209 0.791 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.172 -6.205 18.196 20.192 hybrid contribution 0.332 0.192 -1.036 1.105 sum -5.840 -6.013 17.160 19.098 Atomic orbital electron populations 1.21818 0.94824 1.01730 1.01438 1.21400 0.96592 0.99769 0.93139 0.89184 1.21701 1.00325 0.79812 0.98485 1.48118 1.54710 1.11936 1.18013 1.20073 0.76981 0.88029 0.82491 1.90673 1.57827 1.65961 1.29999 1.23309 0.96817 0.92046 1.05495 1.21858 0.90352 0.79617 0.85149 1.92993 1.80005 1.96576 1.49482 1.92966 1.88119 1.41900 1.94268 1.22971 0.94214 1.01326 0.96134 1.23053 1.01314 0.99318 0.93678 1.22774 0.94714 1.00697 0.96379 1.22187 1.01672 0.95336 0.83224 1.21834 1.01444 0.95275 0.97168 1.21187 1.00058 0.95128 0.93409 0.91328 1.20834 0.95550 0.94587 0.85754 1.42545 1.56905 1.37485 1.01484 1.19583 1.22236 1.10451 0.85304 0.91174 1.25431 1.00635 0.99055 1.01115 1.69777 1.37052 1.25715 1.29071 0.85249 0.77919 0.76930 0.80325 1.21692 1.22159 1.19708 0.92838 0.92666 0.92713 0.90118 0.89662 0.84083 0.88573 0.88343 0.88091 0.89259 0.90913 0.89149 0.89338 0.88128 0.91105 0.91301 0.96973 0.96091 0.79089 0.94040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.38 71.98 0.60 -2.58 16 2 C -0.09 -2.00 2.72 -10.72 -0.03 -2.03 16 3 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 4 C 0.12 2.52 5.81 86.36 0.50 3.02 16 5 N -0.60 -12.40 2.41 -818.90 -1.97 -14.37 16 6 C 0.54 12.61 6.62 87.66 0.58 13.19 16 7 O -0.57 -17.32 15.58 -3.03 -0.05 -17.36 16 8 C -0.17 -3.21 0.47 -52.40 -0.02 -3.24 16 9 C 0.28 5.00 4.30 71.98 0.31 5.31 16 10 F -0.21 -4.75 17.20 44.97 0.77 -3.97 16 11 F -0.19 -3.37 14.56 44.97 0.65 -2.72 16 12 C -0.11 -1.64 5.88 31.12 0.18 -1.45 16 13 C -0.14 -1.93 7.56 31.12 0.24 -1.69 16 14 C -0.11 -1.99 6.79 31.12 0.21 -1.78 16 15 C 0.10 1.80 4.95 86.36 0.43 2.23 16 16 C -0.12 -2.91 4.91 30.67 0.15 -2.76 16 17 C -0.08 -2.14 1.96 -10.76 -0.02 -2.16 16 18 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 19 C 0.16 5.81 5.19 86.38 0.45 6.26 16 20 N -0.74 -35.19 5.32 -343.45 -1.83 -37.01 16 21 C -0.24 -13.13 9.99 84.03 0.84 -12.29 16 22 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 23 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 24 N -0.97 -56.62 13.06 21.65 0.28 -56.34 16 25 Si 0.97 44.89 29.55 68.60 2.03 46.92 16 26 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 27 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 28 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 29 H 0.05 1.22 5.97 -2.39 -0.01 1.20 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.33 6.58 -2.39 -0.02 1.31 16 32 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.08 1.97 7.04 -2.38 -0.02 1.96 16 34 H 0.14 1.88 5.47 -2.39 -0.01 1.86 16 35 H 0.10 1.52 8.09 -2.39 -0.02 1.50 16 36 H 0.10 1.26 7.30 -2.39 -0.02 1.24 16 37 H 0.10 1.39 6.39 -2.39 -0.02 1.38 16 38 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.07 1.39 8.08 -2.39 -0.02 1.37 16 40 H 0.09 1.84 7.71 -2.39 -0.02 1.83 16 41 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.10 1.47 3.30 -2.39 -0.01 1.46 16 43 H 0.07 1.73 6.33 -2.39 -0.02 1.72 16 44 H 0.07 2.03 7.15 -2.39 -0.02 2.01 16 45 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.02 0.78 6.74 -2.38 -0.02 0.77 16 47 H 0.38 18.68 6.85 -92.71 -0.63 18.04 16 48 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -66.07 366.16 5.13 -60.95 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.35 Total: 27.30 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 4.88 Total: -3.39 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -3.52 Total: -107.73 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.05 Total: -17.36 kcal Atomic # 9 Polarization: -8.12 SS G_CDS: 1.43 Total: -6.69 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -66.07 5.13 -60.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184992388.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.087 kcal (2) G-P(sol) polarization free energy of solvation -66.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds