Wall clock time and date at job start Tue Mar 31 2020 17:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.49639 * 2 1 4 4 C 1.53195 * 109.49763 * 239.93676 * 2 1 3 5 5 N 1.46929 * 108.88752 * 294.60971 * 4 2 1 6 6 C 1.34779 * 120.62498 * 126.47143 * 5 4 2 7 7 O 1.21276 * 120.00315 * 354.95855 * 6 5 4 8 8 C 1.50698 * 119.99698 * 174.96700 * 6 5 4 9 9 C 1.53010 * 112.84691 * 288.47718 * 8 6 5 10 10 F 1.39894 * 109.46940 * 65.12861 * 9 8 6 11 11 F 1.39893 * 109.47072 * 185.12785 * 9 8 6 12 12 C 1.53778 * 113.61554 * 157.17614 * 8 6 5 13 13 C 1.53785 * 87.08044 * 220.01490 * 12 8 6 14 14 C 1.53777 * 113.61972 * 59.67231 * 8 6 5 15 15 C 1.46957 * 118.71597 * 306.64102 * 5 4 2 16 16 C 1.53188 * 108.88841 * 53.35861 * 15 5 4 17 17 C 1.53035 * 109.31325 * 305.44035 * 16 15 5 18 18 H 1.09001 * 109.46300 * 301.34454 * 17 16 15 19 19 C 1.53001 * 109.44581 * 181.38019 * 17 16 15 20 20 N 1.46492 * 109.47336 * 64.94215 * 19 17 16 21 21 C 1.36942 * 120.00181 * 179.97438 * 20 19 17 22 22 H 1.08005 * 119.99824 * 0.02562 * 21 20 19 23 23 C 1.38812 * 119.99887 * 179.97438 * 21 20 19 24 24 N 1.31622 * 119.99551 * 180.02562 * 23 21 20 25 25 Si 1.86793 * 120.00443 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.46876 * 89.99591 * 25 23 21 27 27 H 1.48496 * 109.47163 * 209.99883 * 25 23 21 28 28 H 1.48507 * 109.46969 * 330.00016 * 25 23 21 29 29 H 1.08992 * 109.46643 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46730 * 300.06158 * 1 2 3 31 31 H 1.08995 * 109.47107 * 60.06277 * 1 2 3 32 32 H 1.08998 * 109.58239 * 54.46835 * 4 2 1 33 33 H 1.08999 * 109.58206 * 174.75529 * 4 2 1 34 34 H 1.08996 * 109.47023 * 305.12771 * 9 8 6 35 35 H 1.08994 * 113.61188 * 334.56062 * 12 8 6 36 36 H 1.09002 * 113.61642 * 105.46945 * 12 8 6 37 37 H 1.09006 * 113.61132 * 270.88414 * 13 12 8 38 38 H 1.08994 * 113.69050 * 139.99017 * 13 12 8 39 39 H 1.09003 * 113.61870 * 254.53402 * 14 8 6 40 40 H 1.08999 * 113.61240 * 25.35033 * 14 8 6 41 41 H 1.09008 * 109.46869 * 293.57103 * 15 5 4 42 42 H 1.09003 * 109.59588 * 173.21932 * 15 5 4 43 43 H 1.09008 * 109.49835 * 185.48681 * 16 15 5 44 44 H 1.09004 * 109.49586 * 65.39711 * 16 15 5 45 45 H 1.09005 * 109.46997 * 184.93885 * 19 17 16 46 46 H 1.09002 * 109.47034 * 304.93500 * 19 17 16 47 47 H 0.96999 * 120.00608 * 359.97438 * 20 19 17 48 48 H 0.97006 * 120.00135 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 1.6544 -2.1387 -1.1719 6 6 0.9795 -2.7226 -2.1820 7 8 0.6061 -2.0585 -3.1256 8 6 0.6889 -4.2006 -2.1388 9 6 1.9371 -5.0582 -2.3569 10 9 2.8267 -4.8655 -1.2946 11 9 1.5711 -6.4070 -2.4197 12 6 -0.5079 -4.6188 -3.0092 13 6 -0.9011 -5.5750 -1.8708 14 6 -0.1475 -4.6287 -0.9214 15 6 2.0141 -2.9039 0.0300 16 6 1.5031 -2.1560 1.2654 17 6 2.0409 -0.7234 1.2481 18 1 3.1306 -0.7446 1.2351 19 6 1.5605 0.0162 2.4984 20 7 2.1466 -0.6050 3.6886 21 6 1.8582 -0.1093 4.9322 22 1 1.1983 0.7395 5.0354 23 6 2.4132 -0.6982 6.0600 24 7 2.1355 -0.2220 7.2552 25 14 3.5538 -2.1666 5.8815 26 1 4.9542 -1.6918 5.7450 27 1 3.4393 -3.0314 7.0833 28 1 3.1748 -2.9440 4.6743 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5148 0.8895 31 1 -0.3633 0.5128 -0.8905 32 1 1.6007 -0.2724 -2.1389 33 1 3.1273 -0.6437 -1.2995 34 1 2.4183 -4.7684 -3.2910 35 1 -1.2282 -3.8178 -3.1750 36 1 -0.2217 -5.1292 -3.9289 37 1 -0.4473 -6.5627 -1.9538 38 1 -1.9743 -5.6166 -1.6848 39 1 0.4295 -5.1470 -0.1555 40 1 -0.7683 -3.8299 -0.5155 41 1 3.0981 -3.0043 0.0859 42 1 1.5555 -3.8918 -0.0147 43 1 1.8481 -2.6633 2.1664 44 1 0.4133 -2.1358 1.2535 45 1 1.8692 1.0602 2.4441 46 1 0.4735 -0.0386 2.5578 47 1 2.7389 -1.3675 3.5960 48 1 2.5236 -0.6333 8.0434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184992389.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:21 Heat of formation + Delta-G solvation = -96.131186 kcal Electronic energy + Delta-G solvation = -30918.078716 eV Core-core repulsion = 26644.941948 eV Total energy + Delta-G solvation = -4273.136768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -49.51949 -47.45319 -41.09912 -39.00608 -37.55648 -35.16587 -33.47463 -31.88567 -30.72275 -29.41620 -27.42532 -26.97152 -26.09507 -24.53775 -23.58070 -23.00489 -21.50056 -20.65621 -19.69820 -18.63659 -18.29118 -17.68163 -17.50115 -17.34391 -16.33387 -16.07402 -15.45719 -15.09837 -14.93974 -14.41127 -14.29585 -14.19377 -14.08791 -13.86064 -13.68180 -13.52711 -13.19064 -12.93886 -12.84760 -12.74986 -12.62473 -12.42294 -12.28587 -12.07490 -11.72757 -11.55190 -11.43645 -11.36886 -11.05227 -10.87271 -10.82555 -10.67711 -10.46431 -10.26126 -10.18369 -10.07850 -9.79640 -9.58692 -8.89409 -8.71199 -7.22564 -5.77510 -3.12659 2.17711 2.71524 3.33811 3.34801 3.37886 3.43929 3.59732 3.75020 3.80127 4.18479 4.32788 4.53609 4.57853 4.64102 4.72738 4.79227 4.88905 4.93548 5.05797 5.16268 5.26577 5.30102 5.44097 5.46373 5.48733 5.52172 5.56922 5.59798 5.61333 5.65703 5.73493 5.79393 5.83017 5.93072 5.95479 6.09382 6.15764 6.26749 6.29803 6.36478 6.51101 6.69241 6.81774 7.20002 7.88486 7.99325 8.41691 9.21081 9.93419 10.13413 11.41123 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015467 B = 0.003678 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.819320 B = 7611.637068 C = 8522.707722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.084 0.916 4 C 0.115 3.885 5 N -0.594 5.594 6 C 0.534 3.466 7 O -0.536 6.536 8 C -0.170 4.170 9 C 0.294 3.706 10 F -0.192 7.192 11 F -0.193 7.193 12 C -0.098 4.098 13 C -0.148 4.148 14 C -0.121 4.121 15 C 0.092 3.908 16 C -0.131 4.131 17 C -0.093 4.093 18 H 0.071 0.929 19 C 0.163 3.837 20 N -0.755 5.755 21 C -0.243 4.243 22 H 0.089 0.911 23 C 0.004 3.996 24 N -0.935 5.935 25 Si 0.884 3.116 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.277 1.277 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.117 0.883 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.026 0.974 46 H 0.029 0.971 47 H 0.360 0.640 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.576 -10.306 -23.606 25.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.102 0.898 4 C -0.007 4.007 5 N -0.326 5.326 6 C 0.320 3.680 7 O -0.413 6.413 8 C -0.175 4.175 9 C 0.240 3.760 10 F -0.173 7.173 11 F -0.174 7.174 12 C -0.136 4.136 13 C -0.185 4.185 14 C -0.159 4.159 15 C -0.030 4.030 16 C -0.169 4.169 17 C -0.112 4.112 18 H 0.089 0.911 19 C 0.036 3.964 20 N -0.401 5.401 21 C -0.373 4.373 22 H 0.107 0.893 23 C -0.192 4.192 24 N -0.583 5.583 25 Si 0.715 3.285 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.203 1.203 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.134 0.866 35 H 0.119 0.881 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.116 0.884 41 H 0.091 0.909 42 H 0.115 0.885 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.044 0.956 46 H 0.047 0.953 47 H 0.193 0.807 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.847 -9.822 -23.891 25.988 hybrid contribution 1.047 -1.051 0.340 1.522 sum -1.800 -10.873 -23.551 26.002 Atomic orbital electron populations 1.21857 0.94767 1.01879 1.01675 1.21448 0.96768 0.99528 0.93896 0.89784 1.21738 0.99507 0.80024 0.99430 1.48065 1.54915 1.11643 1.17958 1.19728 0.77768 0.88055 0.82405 1.90694 1.51695 1.64580 1.34294 1.23270 0.96498 0.93616 1.04068 1.21239 0.86986 0.77829 0.89950 1.93023 1.69741 1.94741 1.59790 1.92962 1.92111 1.35366 1.96934 1.22727 0.94275 0.99444 0.97116 1.23114 1.01383 0.98756 0.95267 1.23050 0.97740 1.00170 0.94904 1.22419 1.01003 0.95748 0.83795 1.22035 1.01640 0.96053 0.97192 1.21365 1.00253 0.94731 0.94848 0.91069 1.20689 0.96259 0.94849 0.84609 1.42733 1.57579 1.37194 1.02612 1.19066 1.24205 1.12068 0.81941 0.89315 1.24670 1.00302 0.99115 0.95106 1.69705 1.48344 1.43225 0.97050 0.86556 0.81535 0.83611 0.76837 1.21121 1.21753 1.20339 0.92761 0.91770 0.93211 0.89053 0.91362 0.86598 0.88131 0.90268 0.88438 0.90440 0.89554 0.88386 0.90919 0.88547 0.90013 0.91082 0.95626 0.95317 0.80725 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.38 37.16 0.31 -1.45 16 2 C -0.10 -1.16 2.72 -90.50 -0.25 -1.40 16 3 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 4 C 0.12 1.29 5.83 -3.71 -0.02 1.27 16 5 N -0.59 -6.67 2.43 -172.74 -0.42 -7.09 16 6 C 0.53 6.17 6.64 -10.98 -0.07 6.10 16 7 O -0.54 -7.65 15.72 5.56 0.09 -7.57 16 8 C -0.17 -1.54 0.70 -154.85 -0.11 -1.65 16 9 C 0.29 2.46 4.75 37.16 0.18 2.64 16 10 F -0.19 -1.89 13.45 2.25 0.03 -1.86 16 11 F -0.19 -1.67 14.56 2.25 0.03 -1.64 16 12 C -0.10 -0.78 6.68 -25.92 -0.17 -0.96 16 13 C -0.15 -1.08 7.56 -25.92 -0.20 -1.27 16 14 C -0.12 -1.03 5.28 -25.92 -0.14 -1.17 16 15 C 0.09 1.03 4.27 -3.70 -0.02 1.02 16 16 C -0.13 -1.75 4.90 -26.62 -0.13 -1.88 16 17 C -0.09 -1.32 1.96 -90.58 -0.18 -1.50 16 18 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 19 C 0.16 3.01 5.19 -4.05 -0.02 2.99 16 20 N -0.76 -17.47 5.12 -59.91 -0.31 -17.77 16 21 C -0.24 -6.83 10.47 -15.06 -0.16 -6.98 16 22 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 23 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 24 N -0.94 -29.33 13.97 55.49 0.78 -28.56 16 25 Si 0.88 21.85 27.74 -169.99 -4.71 17.13 16 26 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 29 H 0.05 0.68 5.97 -51.93 -0.31 0.37 16 30 H 0.06 0.83 6.59 -51.93 -0.34 0.49 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.09 1.08 7.00 -51.93 -0.36 0.71 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.89 7.83 -51.93 -0.41 0.49 16 36 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 37 H 0.10 0.70 6.38 -51.93 -0.33 0.37 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.74 6.87 -51.93 -0.36 0.38 16 40 H 0.10 0.88 8.09 -51.93 -0.42 0.46 16 41 H 0.07 0.82 7.71 -51.92 -0.40 0.42 16 42 H 0.10 0.99 2.59 -51.93 -0.13 0.85 16 43 H 0.08 1.24 7.15 -51.92 -0.37 0.87 16 44 H 0.07 0.96 6.33 -51.93 -0.33 0.63 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.03 0.55 6.74 -51.93 -0.35 0.20 16 47 H 0.36 8.06 4.70 -40.82 -0.19 7.87 16 48 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 LS Contribution 359.97 15.07 5.42 5.42 Total: -1.00 -32.23 359.97 -7.44 -39.67 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -7.28 Total: 6.50 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -1.07 Total: -4.25 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 0.05 Total: -53.42 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: 0.09 Total: -7.57 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.06 Total: -3.50 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.13 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.23 -7.44 -39.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184992389.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.464 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds