Wall clock time and date at job start Tue Mar 31 2020 17:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.49639 * 2 1 4 4 C 1.53195 * 109.49763 * 239.93676 * 2 1 3 5 5 N 1.46929 * 108.88752 * 294.60971 * 4 2 1 6 6 C 1.34779 * 120.62498 * 126.47143 * 5 4 2 7 7 O 1.21276 * 120.00315 * 354.95855 * 6 5 4 8 8 C 1.50698 * 119.99698 * 174.96700 * 6 5 4 9 9 C 1.53010 * 112.84691 * 288.47718 * 8 6 5 10 10 F 1.39894 * 109.46940 * 65.12861 * 9 8 6 11 11 F 1.39893 * 109.47072 * 185.12785 * 9 8 6 12 12 C 1.53778 * 113.61554 * 157.17614 * 8 6 5 13 13 C 1.53785 * 87.08044 * 220.01490 * 12 8 6 14 14 C 1.53777 * 113.61972 * 59.67231 * 8 6 5 15 15 C 1.46957 * 118.71597 * 306.64102 * 5 4 2 16 16 C 1.53188 * 108.88841 * 53.35861 * 15 5 4 17 17 C 1.53035 * 109.31325 * 305.44035 * 16 15 5 18 18 H 1.09001 * 109.46300 * 301.34454 * 17 16 15 19 19 C 1.53001 * 109.44581 * 181.38019 * 17 16 15 20 20 N 1.46492 * 109.47336 * 64.94215 * 19 17 16 21 21 C 1.36942 * 120.00181 * 179.97438 * 20 19 17 22 22 H 1.08005 * 119.99824 * 0.02562 * 21 20 19 23 23 C 1.38812 * 119.99887 * 179.97438 * 21 20 19 24 24 N 1.31622 * 119.99551 * 180.02562 * 23 21 20 25 25 Si 1.86793 * 120.00443 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.46876 * 89.99591 * 25 23 21 27 27 H 1.48496 * 109.47163 * 209.99883 * 25 23 21 28 28 H 1.48507 * 109.46969 * 330.00016 * 25 23 21 29 29 H 1.08992 * 109.46643 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46730 * 300.06158 * 1 2 3 31 31 H 1.08995 * 109.47107 * 60.06277 * 1 2 3 32 32 H 1.08998 * 109.58239 * 54.46835 * 4 2 1 33 33 H 1.08999 * 109.58206 * 174.75529 * 4 2 1 34 34 H 1.08996 * 109.47023 * 305.12771 * 9 8 6 35 35 H 1.08994 * 113.61188 * 334.56062 * 12 8 6 36 36 H 1.09002 * 113.61642 * 105.46945 * 12 8 6 37 37 H 1.09006 * 113.61132 * 270.88414 * 13 12 8 38 38 H 1.08994 * 113.69050 * 139.99017 * 13 12 8 39 39 H 1.09003 * 113.61870 * 254.53402 * 14 8 6 40 40 H 1.08999 * 113.61240 * 25.35033 * 14 8 6 41 41 H 1.09008 * 109.46869 * 293.57103 * 15 5 4 42 42 H 1.09003 * 109.59588 * 173.21932 * 15 5 4 43 43 H 1.09008 * 109.49835 * 185.48681 * 16 15 5 44 44 H 1.09004 * 109.49586 * 65.39711 * 16 15 5 45 45 H 1.09005 * 109.46997 * 184.93885 * 19 17 16 46 46 H 1.09002 * 109.47034 * 304.93500 * 19 17 16 47 47 H 0.96999 * 120.00608 * 359.97438 * 20 19 17 48 48 H 0.97006 * 120.00135 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 1.6544 -2.1387 -1.1719 6 6 0.9795 -2.7226 -2.1820 7 8 0.6061 -2.0585 -3.1256 8 6 0.6889 -4.2006 -2.1388 9 6 1.9371 -5.0582 -2.3569 10 9 2.8267 -4.8655 -1.2946 11 9 1.5711 -6.4070 -2.4197 12 6 -0.5079 -4.6188 -3.0092 13 6 -0.9011 -5.5750 -1.8708 14 6 -0.1475 -4.6287 -0.9214 15 6 2.0141 -2.9039 0.0300 16 6 1.5031 -2.1560 1.2654 17 6 2.0409 -0.7234 1.2481 18 1 3.1306 -0.7446 1.2351 19 6 1.5605 0.0162 2.4984 20 7 2.1466 -0.6050 3.6886 21 6 1.8582 -0.1093 4.9322 22 1 1.1983 0.7395 5.0354 23 6 2.4132 -0.6982 6.0600 24 7 2.1355 -0.2220 7.2552 25 14 3.5538 -2.1666 5.8815 26 1 4.9542 -1.6918 5.7450 27 1 3.4393 -3.0314 7.0833 28 1 3.1748 -2.9440 4.6743 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5148 0.8895 31 1 -0.3633 0.5128 -0.8905 32 1 1.6007 -0.2724 -2.1389 33 1 3.1273 -0.6437 -1.2995 34 1 2.4183 -4.7684 -3.2910 35 1 -1.2282 -3.8178 -3.1750 36 1 -0.2217 -5.1292 -3.9289 37 1 -0.4473 -6.5627 -1.9538 38 1 -1.9743 -5.6166 -1.6848 39 1 0.4295 -5.1470 -0.1555 40 1 -0.7683 -3.8299 -0.5155 41 1 3.0981 -3.0043 0.0859 42 1 1.5555 -3.8918 -0.0147 43 1 1.8481 -2.6633 2.1664 44 1 0.4133 -2.1358 1.2535 45 1 1.8692 1.0602 2.4441 46 1 0.4735 -0.0386 2.5578 47 1 2.7389 -1.3675 3.5960 48 1 2.5236 -0.6333 8.0434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184992389.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:19 Heat of formation + Delta-G solvation = -115.012858 kcal Electronic energy + Delta-G solvation = -30918.897486 eV Core-core repulsion = 26644.941948 eV Total energy + Delta-G solvation = -4273.955539 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -50.18217 -48.12102 -41.96817 -39.95443 -38.46372 -36.71390 -34.85375 -33.43024 -32.26683 -30.15095 -28.75568 -27.97872 -26.78856 -25.54846 -24.88097 -24.19285 -22.91531 -21.59362 -20.53274 -19.91580 -19.36904 -18.84595 -18.33529 -18.15205 -17.24165 -16.86340 -16.72373 -16.34790 -15.96782 -15.73667 -15.57129 -15.19021 -15.05634 -14.89268 -14.67103 -14.62123 -14.39983 -14.03076 -13.99300 -13.64883 -13.56824 -13.48279 -13.32667 -13.18279 -12.89935 -12.77627 -12.70363 -12.37161 -12.27786 -12.16342 -12.01304 -11.85294 -11.62943 -11.52321 -11.34193 -11.30462 -11.19068 -10.94236 -10.69918 -9.66593 -9.27175 -8.02085 -5.35320 1.31652 1.37882 1.42307 1.49661 1.85135 2.49338 2.66617 2.92323 3.05881 3.14838 3.29533 3.45433 3.54496 3.70779 3.75880 3.77706 3.92431 4.01648 4.03016 4.10236 4.21244 4.27443 4.42222 4.43750 4.61775 4.63748 4.67444 4.72082 4.75110 4.80805 4.84314 4.88081 4.95067 4.97592 5.03869 5.05384 5.13664 5.16702 5.21973 5.27369 5.34957 5.48449 5.58510 5.76564 6.21914 6.29894 6.99114 7.09338 7.85513 8.05535 9.19770 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015467 B = 0.003678 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.819320 B = 7611.637068 C = 8522.707722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 H 0.093 0.907 4 C 0.118 3.882 5 N -0.593 5.593 6 C 0.534 3.466 7 O -0.564 6.564 8 C -0.170 4.170 9 C 0.294 3.706 10 F -0.200 7.200 11 F -0.193 7.193 12 C -0.096 4.096 13 C -0.138 4.138 14 C -0.125 4.125 15 C 0.101 3.899 16 C -0.128 4.128 17 C -0.083 4.083 18 H 0.076 0.924 19 C 0.161 3.839 20 N -0.755 5.755 21 C -0.235 4.235 22 H 0.052 0.948 23 C -0.064 4.064 24 N -0.986 5.986 25 Si 0.955 3.045 26 H -0.278 1.278 27 H -0.297 1.297 28 H -0.245 1.245 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.138 0.862 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.108 0.892 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.020 0.980 46 H 0.023 0.977 47 H 0.367 0.633 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.571 -12.282 -25.812 28.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 H 0.111 0.889 4 C -0.004 4.004 5 N -0.324 5.324 6 C 0.322 3.678 7 O -0.444 6.444 8 C -0.174 4.174 9 C 0.240 3.760 10 F -0.181 7.181 11 F -0.174 7.174 12 C -0.134 4.134 13 C -0.175 4.175 14 C -0.162 4.162 15 C -0.021 4.021 16 C -0.166 4.166 17 C -0.102 4.102 18 H 0.095 0.905 19 C 0.036 3.964 20 N -0.401 5.401 21 C -0.366 4.366 22 H 0.070 0.930 23 C -0.256 4.256 24 N -0.637 5.637 25 Si 0.782 3.218 26 H -0.205 1.205 27 H -0.224 1.224 28 H -0.169 1.169 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.155 0.845 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.126 0.874 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.038 0.962 46 H 0.041 0.959 47 H 0.200 0.800 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.847 -11.802 -26.149 28.748 hybrid contribution 0.634 -0.316 1.017 1.239 sum -1.213 -12.118 -25.132 27.927 Atomic orbital electron populations 1.21804 0.95076 1.01482 1.01397 1.21395 0.96393 0.99938 0.93222 0.88909 1.21722 1.00352 0.79904 0.98459 1.48105 1.54702 1.11694 1.17946 1.20091 0.76935 0.88949 0.81816 1.90683 1.52790 1.65520 1.35370 1.23309 0.97272 0.92052 1.04784 1.21389 0.86524 0.77585 0.90466 1.93001 1.69959 1.94783 1.60367 1.92962 1.92124 1.35388 1.96936 1.22720 0.93558 0.99325 0.97810 1.23068 1.01826 0.98451 0.94182 1.23069 0.97838 1.00334 0.94967 1.22365 1.01350 0.95785 0.82570 1.21971 1.01428 0.95483 0.97748 1.21258 1.00497 0.94977 0.93436 0.90515 1.20828 0.95708 0.94917 0.84991 1.42702 1.57807 1.37441 1.02157 1.19035 1.22690 1.10709 0.84182 0.92988 1.25530 1.02688 1.02800 0.94554 1.69899 1.50343 1.45363 0.98081 0.85413 0.79036 0.79667 0.77724 1.20468 1.22364 1.16932 0.93210 0.92965 0.92535 0.89391 0.89834 0.84506 0.89184 0.89097 0.87984 0.89616 0.89414 0.89093 0.90245 0.87421 0.91484 0.91464 0.96206 0.95938 0.79951 0.93364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.38 71.98 0.60 -2.68 16 2 C -0.09 -1.99 2.72 -10.71 -0.03 -2.02 16 3 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 4 C 0.12 2.36 5.83 86.36 0.50 2.86 16 5 N -0.59 -12.02 2.43 -818.81 -1.99 -14.00 16 6 C 0.53 11.32 6.64 87.66 0.58 11.90 16 7 O -0.56 -15.29 15.72 -3.02 -0.05 -15.34 16 8 C -0.17 -2.71 0.70 -52.40 -0.04 -2.74 16 9 C 0.29 4.11 4.75 71.99 0.34 4.46 16 10 F -0.20 -3.37 13.45 44.97 0.60 -2.76 16 11 F -0.19 -2.81 14.56 44.97 0.65 -2.16 16 12 C -0.10 -1.35 6.68 31.12 0.21 -1.14 16 13 C -0.14 -1.70 7.56 31.12 0.24 -1.47 16 14 C -0.12 -1.87 5.28 31.12 0.16 -1.71 16 15 C 0.10 2.01 4.27 86.36 0.37 2.38 16 16 C -0.13 -3.19 4.90 30.67 0.15 -3.04 16 17 C -0.08 -2.20 1.96 -10.77 -0.02 -2.23 16 18 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 19 C 0.16 5.90 5.19 86.38 0.45 6.34 16 20 N -0.75 -34.39 5.12 -343.45 -1.76 -36.15 16 21 C -0.24 -13.42 10.47 84.03 0.88 -12.54 16 22 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 23 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 24 N -0.99 -63.41 13.97 21.65 0.30 -63.11 16 25 Si 0.95 44.67 27.74 68.60 1.90 46.57 16 26 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 27 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 28 H -0.25 -10.05 6.52 99.48 0.65 -9.40 16 29 H 0.05 1.20 5.97 -2.39 -0.01 1.19 16 30 H 0.05 1.33 6.59 -2.39 -0.02 1.32 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.09 1.90 7.00 -2.39 -0.02 1.88 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.09 1.48 7.83 -2.39 -0.02 1.46 16 36 H 0.09 1.06 8.10 -2.39 -0.02 1.04 16 37 H 0.10 1.20 6.38 -2.38 -0.02 1.19 16 38 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.09 1.30 6.87 -2.39 -0.02 1.28 16 40 H 0.09 1.50 8.09 -2.39 -0.02 1.48 16 41 H 0.08 1.53 7.71 -2.38 -0.02 1.52 16 42 H 0.11 1.94 2.59 -2.39 -0.01 1.93 16 43 H 0.07 1.89 7.15 -2.38 -0.02 1.88 16 44 H 0.07 1.72 6.33 -2.38 -0.02 1.71 16 45 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 46 H 0.02 0.86 6.74 -2.39 -0.02 0.85 16 47 H 0.37 15.68 4.70 -92.71 -0.44 15.24 16 48 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16 Total: -1.00 -70.00 359.97 5.02 -64.98 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.49 Total: 26.93 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 4.86 Total: -4.95 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -3.44 Total: -113.26 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.05 Total: -15.34 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 1.26 Total: -4.92 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.90 Total: 46.57 kcal Total: -70.00 5.02 -64.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184992389.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.036 kcal (2) G-P(sol) polarization free energy of solvation -69.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds