Wall clock time and date at job start Tue Mar 31 2020 16:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 115.55079 * 2 1 4 4 C 1.53007 * 117.50022 * 145.70753 * 2 1 3 5 5 C 1.53002 * 59.99933 * 107.48902 * 4 2 1 6 6 H 1.09000 * 117.51496 * 252.51729 * 5 4 2 7 7 C 1.50696 * 117.50027 * 107.49352 * 5 4 2 8 8 N 1.31868 * 118.95270 * 171.37309 * 7 5 4 9 9 C 1.32153 * 120.96432 * 179.97438 * 8 7 5 10 10 C 1.39943 * 118.92573 * 0.02562 * 9 8 7 11 11 C 1.47832 * 120.94239 * 179.97438 * 10 9 8 12 12 O 1.21559 * 119.99256 * 329.10147 * 11 10 9 13 13 N 1.34771 * 120.00158 * 148.82721 * 11 10 9 14 14 C 1.47086 * 120.87819 * 174.11055 * 13 11 10 15 15 C 1.53688 * 108.27748 * 128.75512 * 14 13 11 16 16 N 1.46898 * 109.25721 * 54.07753 * 15 14 13 17 17 C 1.46909 * 110.99843 * 172.60899 * 16 15 14 18 18 C 1.50693 * 109.47152 * 59.81917 * 17 16 15 19 19 H 1.08006 * 119.99978 * 355.44946 * 18 17 16 20 20 C 1.37873 * 120.00245 * 175.45060 * 18 17 16 21 21 N 1.31509 * 120.00440 * 180.02562 * 20 18 17 22 22 Si 1.86807 * 119.99701 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47341 * 89.99694 * 22 20 18 24 24 H 1.48499 * 109.46843 * 209.99890 * 22 20 18 25 25 H 1.48503 * 109.46990 * 329.99654 * 22 20 18 26 26 C 1.46900 * 111.27258 * 296.75568 * 16 15 14 27 27 C 1.47070 * 120.88231 * 354.38578 * 13 11 10 28 28 C 1.39951 * 118.11942 * 0.24492 * 10 9 8 29 29 N 1.31875 * 118.94810 * 351.35466 * 7 5 4 30 30 H 1.08996 * 109.47020 * 205.67665 * 1 2 3 31 31 H 1.09007 * 109.46850 * 325.67124 * 1 2 3 32 32 H 1.08996 * 109.47170 * 85.67299 * 1 2 3 33 33 H 1.09005 * 117.49245 * 359.97438 * 4 2 1 34 34 H 1.09002 * 117.50014 * 214.97880 * 4 2 1 35 35 H 1.08001 * 120.53516 * 179.97438 * 9 8 7 36 36 H 1.09002 * 109.62281 * 248.52280 * 14 13 11 37 37 H 1.08995 * 109.62766 * 9.09820 * 14 13 11 38 38 H 1.09006 * 109.64736 * 294.07541 * 15 14 13 39 39 H 1.09003 * 109.42360 * 173.94569 * 15 14 13 40 40 H 1.08996 * 109.46782 * 179.82116 * 17 16 15 41 41 H 1.08998 * 109.46858 * 299.81453 * 17 16 15 42 42 H 0.97009 * 120.00231 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.49050 * 303.14809 * 26 16 15 44 44 H 1.08998 * 109.49501 * 183.06178 * 26 16 15 45 45 H 1.08996 * 109.63309 * 350.89696 * 27 13 11 46 46 H 1.09002 * 109.62874 * 111.28735 * 27 13 11 47 47 H 1.08008 * 120.53380 * 179.75005 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1213 0.7647 5 6 2.2365 -1.1208 -0.7654 6 1 1.6113 -1.8579 -1.2691 7 6 3.5293 -0.7807 -1.4611 8 7 3.6114 -0.9377 -2.7679 9 6 4.7255 -0.6513 -3.4184 10 6 5.8269 -0.1759 -2.6978 11 6 7.0952 0.1577 -3.3802 12 8 7.4242 -0.4483 -4.3813 13 7 7.8838 1.1373 -2.8956 14 6 9.2075 1.3996 -3.4807 15 6 9.3041 2.8996 -3.8014 16 7 8.9954 3.6744 -2.5922 17 6 9.2459 5.1061 -2.8061 18 6 8.3826 5.6036 -3.9366 19 1 7.7696 4.9103 -4.4935 20 6 8.3754 6.9438 -4.2602 21 7 7.6216 7.3781 -5.2465 22 14 9.4363 8.1428 -3.2976 23 1 10.7707 8.2494 -3.9404 24 1 8.7858 9.4777 -3.2830 25 1 9.5956 7.6544 -1.9043 26 6 7.6144 3.4422 -2.1484 27 6 7.4461 1.9683 -1.7639 28 6 5.6957 -0.0306 -1.3120 29 7 4.5422 -0.3354 -0.7438 30 1 -0.3633 -0.9262 0.4453 31 1 -0.3633 0.8487 0.5796 32 1 -0.3633 0.0775 -1.0247 33 1 1.6112 -1.8587 1.2681 34 1 3.1716 -0.8756 1.2680 35 1 4.7852 -0.7828 -4.4887 36 1 9.9842 1.1238 -2.7674 37 1 9.3246 0.8198 -4.3962 38 1 8.5924 3.1529 -4.5873 39 1 10.3146 3.1344 -4.1359 40 1 9.0063 5.6567 -1.8965 41 1 10.2958 5.2577 -3.0566 42 1 7.6168 8.3211 -5.4744 43 1 6.9263 3.6879 -2.9573 44 1 7.3996 4.0704 -1.2840 45 1 6.3982 1.7648 -1.5438 46 1 8.0546 1.7438 -0.8879 47 1 6.5223 0.3293 -0.7173 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185126296.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:46 Heat of formation + Delta-G solvation = 64.210919 kcal Electronic energy + Delta-G solvation = -28102.402348 eV Core-core repulsion = 24286.907722 eV Total energy + Delta-G solvation = -3815.494626 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.65387 -39.86890 -37.98362 -37.58801 -34.91375 -33.95118 -32.75694 -32.23980 -30.70576 -29.09634 -28.58298 -26.22292 -25.38964 -24.85015 -23.25044 -22.51543 -21.74187 -20.93773 -20.65805 -19.20568 -18.25786 -17.39302 -17.08702 -16.82765 -16.07891 -15.52754 -15.13535 -14.80677 -14.67189 -14.61241 -14.37271 -14.20648 -14.01009 -13.76849 -13.48572 -13.41290 -12.99456 -12.54901 -12.49895 -12.35557 -12.15540 -11.87644 -11.67046 -11.43853 -11.38070 -11.23960 -11.00548 -10.86923 -10.73693 -10.54859 -10.44089 -10.40581 -10.02872 -9.92418 -9.61758 -9.53866 -9.42539 -8.69662 -8.62155 -7.41452 -6.19505 -4.21226 0.22696 0.77773 2.59349 2.88299 3.20790 3.25424 3.29019 3.30593 3.42006 3.63202 3.87200 4.19632 4.30536 4.30594 4.50436 4.51793 4.64500 4.67040 4.71754 4.96253 5.00617 5.10268 5.12581 5.29361 5.35934 5.41438 5.45014 5.48581 5.49934 5.54434 5.71852 5.72961 5.82015 5.86698 5.92401 5.98377 6.01042 6.21563 6.48134 6.52224 6.60956 6.62007 6.79566 6.93442 7.31536 7.43275 7.75537 7.84245 7.87084 8.04239 8.32976 8.81493 9.42094 10.93202 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013286 B = 0.002908 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.905349 B = 9624.730876 C =10771.697635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.127 4.127 3 H 0.108 0.892 4 C -0.147 4.147 5 C -0.105 4.105 6 H 0.131 0.869 7 C 0.364 3.636 8 N -0.516 5.516 9 C 0.210 3.790 10 C -0.242 4.242 11 C 0.569 3.431 12 O -0.536 6.536 13 N -0.597 5.597 14 C 0.117 3.883 15 C 0.047 3.953 16 N -0.533 5.533 17 C 0.154 3.846 18 C -0.556 4.556 19 H 0.074 0.926 20 C 0.073 3.927 21 N -0.896 5.896 22 Si 0.879 3.121 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.263 1.263 26 C 0.048 3.952 27 C 0.096 3.904 28 C 0.181 3.819 29 N -0.519 5.519 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.180 0.820 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.081 0.919 40 H 0.032 0.968 41 H 0.027 0.973 42 H 0.265 0.735 43 H 0.050 0.950 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.131 -16.455 12.109 21.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.146 4.146 3 H 0.126 0.874 4 C -0.185 4.185 5 C -0.125 4.125 6 H 0.148 0.852 7 C 0.099 3.901 8 N -0.229 5.229 9 C 0.043 3.957 10 C -0.250 4.250 11 C 0.355 3.645 12 O -0.414 6.414 13 N -0.330 5.330 14 C -0.005 4.005 15 C -0.082 4.082 16 N -0.257 5.257 17 C 0.027 3.973 18 C -0.595 4.595 19 H 0.092 0.908 20 C -0.130 4.130 21 N -0.534 5.534 22 Si 0.706 3.294 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.188 1.188 26 C -0.082 4.082 27 C -0.027 4.027 28 C 0.014 3.986 29 N -0.233 5.233 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.119 0.881 34 H 0.130 0.870 35 H 0.197 0.803 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.050 0.950 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.098 0.902 47 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.538 -16.990 12.295 22.644 hybrid contribution 0.871 1.482 -0.875 1.929 sum -7.667 -15.508 11.420 20.729 Atomic orbital electron populations 1.21412 0.92073 1.02295 1.02347 1.22444 0.95406 0.94617 1.02142 0.87398 1.23216 1.03296 1.00657 0.91341 1.20816 0.93134 1.04222 0.94309 0.85167 1.22384 0.93181 0.88125 0.86396 1.68262 1.26375 1.18379 1.09913 1.23442 0.85544 0.85559 1.01156 1.21763 0.98212 1.08010 0.96990 1.17775 0.82768 0.80176 0.83734 1.90783 1.73496 1.52562 1.24579 1.48054 1.18277 1.32558 1.34085 1.22010 0.82083 0.97194 0.99245 1.22383 1.02141 0.90628 0.93066 1.62436 1.21346 1.10563 1.31317 1.20221 0.96753 0.83670 0.96643 1.21664 1.26865 0.94368 1.16603 0.90847 1.24982 0.94950 0.98388 0.94672 1.69927 1.39257 1.15444 1.28787 0.86790 0.80784 0.80555 0.81222 1.20117 1.21266 1.18757 1.22257 0.91912 0.92920 1.01081 1.22493 0.99652 0.91825 0.88740 1.23872 0.95114 0.88151 0.91437 1.68198 1.00429 1.14010 1.40647 0.92222 0.91635 0.91829 0.88060 0.87047 0.80313 0.90857 0.89009 0.93057 0.90074 0.94977 0.95457 0.92562 0.93178 0.90085 0.89885 0.90213 0.80029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 10.19 37.16 0.38 -0.41 16 2 C -0.13 -1.03 6.11 -90.61 -0.55 -1.59 16 3 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.15 -1.12 9.65 -26.73 -0.26 -1.38 16 5 C -0.10 -0.98 5.95 -91.77 -0.55 -1.52 16 6 H 0.13 1.10 8.14 -51.93 -0.42 0.67 16 7 C 0.36 4.38 7.31 -157.06 -1.15 3.24 16 8 N -0.52 -6.72 10.32 -10.39 -0.11 -6.83 16 9 C 0.21 2.71 10.90 -16.78 -0.18 2.53 16 10 C -0.24 -3.16 5.42 -104.69 -0.57 -3.73 16 11 C 0.57 8.60 7.47 -12.34 -0.09 8.51 16 12 O -0.54 -9.58 16.27 5.31 0.09 -9.49 16 13 N -0.60 -8.68 3.00 -173.31 -0.52 -9.20 16 14 C 0.12 1.73 6.64 -3.37 -0.02 1.71 16 15 C 0.05 0.84 5.18 -3.47 -0.02 0.82 16 16 N -0.53 -10.03 4.83 -235.47 -1.14 -11.17 16 17 C 0.15 3.44 4.20 -4.97 -0.02 3.42 16 18 C -0.56 -14.85 8.32 -34.44 -0.29 -15.13 16 19 H 0.07 2.17 6.12 -52.48 -0.32 1.84 16 20 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 21 N -0.90 -26.77 13.96 55.43 0.77 -26.00 16 22 Si 0.88 20.64 27.56 -169.99 -4.69 15.96 16 23 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.26 -5.87 6.41 56.52 0.36 -5.51 16 26 C 0.05 0.81 5.24 -3.70 -0.02 0.79 16 27 C 0.10 1.24 4.90 -3.60 -0.02 1.22 16 28 C 0.18 2.06 8.71 -16.78 -0.15 1.91 16 29 N -0.52 -6.12 9.32 -10.39 -0.10 -6.22 16 30 H 0.06 0.31 7.90 -51.93 -0.41 -0.10 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.58 8.05 -51.93 -0.42 0.16 16 34 H 0.11 0.93 7.53 -51.93 -0.39 0.54 16 35 H 0.18 2.10 8.01 -52.49 -0.42 1.68 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.39 7.04 -51.93 -0.37 1.03 16 38 H 0.05 1.09 6.64 -51.93 -0.34 0.75 16 39 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 40 H 0.03 0.73 6.81 -51.93 -0.35 0.37 16 41 H 0.03 0.62 7.80 -51.93 -0.40 0.21 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.05 1.02 7.08 -51.93 -0.37 0.65 16 44 H 0.08 1.32 8.06 -51.93 -0.42 0.90 16 45 H 0.08 0.97 4.43 -51.93 -0.23 0.74 16 46 H 0.08 0.87 7.97 -51.93 -0.41 0.46 16 47 H 0.18 1.67 5.70 -52.48 -0.30 1.37 16 LS Contribution 373.79 15.07 5.63 5.63 Total: -1.00 -31.87 373.79 -10.52 -42.39 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.87 Total: 2.56 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -3.60 Total: 2.35 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: -1.09 Total: -59.40 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.69 Total: 15.96 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.87 -10.52 -42.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185126296.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.604 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds