Wall clock time and date at job start Tue Mar 31 2020 16:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 115.55079 * 2 1 4 4 C 1.53007 * 117.50022 * 145.70753 * 2 1 3 5 5 C 1.53002 * 59.99933 * 107.48902 * 4 2 1 6 6 H 1.09000 * 117.51496 * 252.51729 * 5 4 2 7 7 C 1.50696 * 117.50027 * 107.49352 * 5 4 2 8 8 N 1.31868 * 118.95270 * 171.37309 * 7 5 4 9 9 C 1.32153 * 120.96432 * 179.97438 * 8 7 5 10 10 C 1.39943 * 118.92573 * 0.02562 * 9 8 7 11 11 C 1.47832 * 120.94239 * 179.97438 * 10 9 8 12 12 O 1.21559 * 119.99256 * 329.10147 * 11 10 9 13 13 N 1.34771 * 120.00158 * 148.82721 * 11 10 9 14 14 C 1.47086 * 120.87819 * 174.11055 * 13 11 10 15 15 C 1.53688 * 108.27748 * 128.75512 * 14 13 11 16 16 N 1.46898 * 109.25721 * 54.07753 * 15 14 13 17 17 C 1.46909 * 110.99843 * 172.60899 * 16 15 14 18 18 C 1.50693 * 109.47152 * 59.81917 * 17 16 15 19 19 H 1.08006 * 119.99978 * 355.44946 * 18 17 16 20 20 C 1.37873 * 120.00245 * 175.45060 * 18 17 16 21 21 N 1.31509 * 120.00440 * 180.02562 * 20 18 17 22 22 Si 1.86807 * 119.99701 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47341 * 89.99694 * 22 20 18 24 24 H 1.48499 * 109.46843 * 209.99890 * 22 20 18 25 25 H 1.48503 * 109.46990 * 329.99654 * 22 20 18 26 26 C 1.46900 * 111.27258 * 296.75568 * 16 15 14 27 27 C 1.47070 * 120.88231 * 354.38578 * 13 11 10 28 28 C 1.39951 * 118.11942 * 0.24492 * 10 9 8 29 29 N 1.31875 * 118.94810 * 351.35466 * 7 5 4 30 30 H 1.08996 * 109.47020 * 205.67665 * 1 2 3 31 31 H 1.09007 * 109.46850 * 325.67124 * 1 2 3 32 32 H 1.08996 * 109.47170 * 85.67299 * 1 2 3 33 33 H 1.09005 * 117.49245 * 359.97438 * 4 2 1 34 34 H 1.09002 * 117.50014 * 214.97880 * 4 2 1 35 35 H 1.08001 * 120.53516 * 179.97438 * 9 8 7 36 36 H 1.09002 * 109.62281 * 248.52280 * 14 13 11 37 37 H 1.08995 * 109.62766 * 9.09820 * 14 13 11 38 38 H 1.09006 * 109.64736 * 294.07541 * 15 14 13 39 39 H 1.09003 * 109.42360 * 173.94569 * 15 14 13 40 40 H 1.08996 * 109.46782 * 179.82116 * 17 16 15 41 41 H 1.08998 * 109.46858 * 299.81453 * 17 16 15 42 42 H 0.97009 * 120.00231 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.49050 * 303.14809 * 26 16 15 44 44 H 1.08998 * 109.49501 * 183.06178 * 26 16 15 45 45 H 1.08996 * 109.63309 * 350.89696 * 27 13 11 46 46 H 1.09002 * 109.62874 * 111.28735 * 27 13 11 47 47 H 1.08008 * 120.53380 * 179.75005 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1213 0.7647 5 6 2.2365 -1.1208 -0.7654 6 1 1.6113 -1.8579 -1.2691 7 6 3.5293 -0.7807 -1.4611 8 7 3.6114 -0.9377 -2.7679 9 6 4.7255 -0.6513 -3.4184 10 6 5.8269 -0.1759 -2.6978 11 6 7.0952 0.1577 -3.3802 12 8 7.4242 -0.4483 -4.3813 13 7 7.8838 1.1373 -2.8956 14 6 9.2075 1.3996 -3.4807 15 6 9.3041 2.8996 -3.8014 16 7 8.9954 3.6744 -2.5922 17 6 9.2459 5.1061 -2.8061 18 6 8.3826 5.6036 -3.9366 19 1 7.7696 4.9103 -4.4935 20 6 8.3754 6.9438 -4.2602 21 7 7.6216 7.3781 -5.2465 22 14 9.4363 8.1428 -3.2976 23 1 10.7707 8.2494 -3.9404 24 1 8.7858 9.4777 -3.2830 25 1 9.5956 7.6544 -1.9043 26 6 7.6144 3.4422 -2.1484 27 6 7.4461 1.9683 -1.7639 28 6 5.6957 -0.0306 -1.3120 29 7 4.5422 -0.3354 -0.7438 30 1 -0.3633 -0.9262 0.4453 31 1 -0.3633 0.8487 0.5796 32 1 -0.3633 0.0775 -1.0247 33 1 1.6112 -1.8587 1.2681 34 1 3.1716 -0.8756 1.2680 35 1 4.7852 -0.7828 -4.4887 36 1 9.9842 1.1238 -2.7674 37 1 9.3246 0.8198 -4.3962 38 1 8.5924 3.1529 -4.5873 39 1 10.3146 3.1344 -4.1359 40 1 9.0063 5.6567 -1.8965 41 1 10.2958 5.2577 -3.0566 42 1 7.6168 8.3211 -5.4744 43 1 6.9263 3.6879 -2.9573 44 1 7.3996 4.0704 -1.2840 45 1 6.3982 1.7648 -1.5438 46 1 8.0546 1.7438 -0.8879 47 1 6.5223 0.3293 -0.7173 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185126296.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:46 Heat of formation + Delta-G solvation = 42.704095 kcal Electronic energy + Delta-G solvation = -28103.334954 eV Core-core repulsion = 24286.907722 eV Total energy + Delta-G solvation = -3816.427232 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.63791 -41.05022 -39.15249 -38.54301 -36.31478 -35.02401 -34.41029 -33.59419 -31.95113 -30.49032 -29.48254 -27.61966 -26.50624 -25.92542 -24.52368 -23.98791 -22.74417 -22.05799 -21.51309 -20.57697 -19.28015 -19.01699 -18.18630 -18.09466 -17.30561 -16.69571 -16.47310 -16.12903 -16.03338 -15.84562 -15.70087 -15.23705 -15.06700 -14.89317 -14.76255 -14.43809 -14.04773 -13.95529 -13.82485 -13.61546 -13.07586 -13.03260 -12.87066 -12.67719 -12.58162 -12.34248 -12.30981 -12.24322 -12.09737 -11.89500 -11.74983 -11.65999 -11.62792 -11.09610 -11.05924 -10.82134 -10.49940 -10.34108 -9.87323 -9.09197 -8.33999 -6.40908 -0.75221 -0.17968 1.36630 1.37561 1.44280 1.49054 1.75227 2.32326 2.37347 2.57784 2.77810 3.01364 3.06388 3.15683 3.21461 3.30606 3.69359 3.80807 3.83042 3.87966 3.98527 4.01507 4.17111 4.24693 4.30976 4.41118 4.42068 4.52291 4.56124 4.66749 4.80793 4.81982 4.94068 4.95883 4.96658 5.04133 5.05536 5.09388 5.13459 5.21930 5.24087 5.32802 5.43257 5.45313 5.65174 5.97100 6.17171 6.26709 6.29273 6.66608 6.80574 6.84926 7.26774 8.82539 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013286 B = 0.002908 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.905349 B = 9624.730876 C =10771.697635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.125 4.125 3 H 0.093 0.907 4 C -0.131 4.131 5 C -0.123 4.123 6 H 0.138 0.862 7 C 0.359 3.641 8 N -0.532 5.532 9 C 0.203 3.797 10 C -0.255 4.255 11 C 0.571 3.429 12 O -0.570 6.570 13 N -0.600 5.600 14 C 0.127 3.873 15 C 0.050 3.950 16 N -0.519 5.519 17 C 0.159 3.841 18 C -0.553 4.553 19 H 0.026 0.974 20 C 0.008 3.992 21 N -0.951 5.951 22 Si 0.954 3.046 23 H -0.268 1.268 24 H -0.288 1.288 25 H -0.236 1.236 26 C 0.046 3.954 27 C 0.106 3.894 28 C 0.191 3.809 29 N -0.520 5.520 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.181 0.819 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.004 0.996 39 H 0.086 0.914 40 H 0.041 0.959 41 H 0.035 0.965 42 H 0.266 0.734 43 H 0.004 0.996 44 H 0.094 0.906 45 H 0.099 0.901 46 H 0.120 0.880 47 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.447 -17.178 15.747 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.145 4.145 3 H 0.112 0.888 4 C -0.168 4.168 5 C -0.142 4.142 6 H 0.156 0.844 7 C 0.094 3.906 8 N -0.245 5.245 9 C 0.036 3.964 10 C -0.263 4.263 11 C 0.359 3.641 12 O -0.451 6.451 13 N -0.332 5.332 14 C 0.005 3.995 15 C -0.079 4.079 16 N -0.242 5.242 17 C 0.031 3.969 18 C -0.592 4.592 19 H 0.044 0.956 20 C -0.190 4.190 21 N -0.591 5.591 22 Si 0.776 3.224 23 H -0.193 1.193 24 H -0.214 1.214 25 H -0.159 1.159 26 C -0.083 4.083 27 C -0.016 4.016 28 C 0.024 3.976 29 N -0.234 5.234 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.143 0.857 34 H 0.123 0.877 35 H 0.198 0.802 36 H 0.123 0.877 37 H 0.104 0.896 38 H 0.022 0.978 39 H 0.105 0.895 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.023 0.977 44 H 0.112 0.888 45 H 0.116 0.884 46 H 0.137 0.863 47 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -7.858 -17.737 15.963 25.123 hybrid contribution 0.554 1.658 -2.066 2.707 sum -7.304 -16.079 13.897 22.472 Atomic orbital electron populations 1.21421 0.90645 1.03420 1.02374 1.22485 0.96441 0.93820 1.01725 0.88834 1.23294 1.03186 1.00492 0.89855 1.20991 0.92422 1.05346 0.95486 0.84431 1.22979 0.94195 0.87132 0.86266 1.68325 1.26329 1.19218 1.10620 1.23564 0.85844 0.85436 1.01547 1.21603 0.97276 1.09597 0.97830 1.18018 0.83074 0.79831 0.83206 1.90761 1.74280 1.53915 1.26106 1.48146 1.18120 1.32517 1.34402 1.21909 0.83242 0.94264 1.00122 1.22361 1.01006 0.92948 0.91570 1.62483 1.22307 1.08462 1.30951 1.20116 0.95967 0.85847 0.94929 1.21920 1.26335 0.93723 1.17179 0.95578 1.26009 0.96520 1.00693 0.95784 1.70103 1.41818 1.15958 1.31266 0.85619 0.78578 0.77377 0.80777 1.19280 1.21442 1.15941 1.22342 0.89748 0.96358 0.99885 1.22581 1.01517 0.88409 0.89092 1.24259 0.95660 0.86908 0.90748 1.68318 1.00479 1.14280 1.40319 0.90694 0.91004 0.92284 0.85706 0.87654 0.80183 0.87661 0.89597 0.97770 0.89544 0.94046 0.94728 0.92564 0.97737 0.88755 0.88361 0.86262 0.77356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 10.19 71.98 0.73 -0.58 16 2 C -0.13 -1.84 6.11 -10.79 -0.07 -1.91 16 3 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 4 C -0.13 -1.67 9.65 30.60 0.30 -1.38 16 5 C -0.12 -2.11 5.95 -11.54 -0.07 -2.18 16 6 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 7 C 0.36 8.29 7.31 138.70 1.01 9.31 16 8 N -0.53 -13.78 10.32 -186.80 -1.93 -15.71 16 9 C 0.20 5.32 10.90 85.06 0.93 6.25 16 10 C -0.26 -6.53 5.42 -19.91 -0.11 -6.64 16 11 C 0.57 17.12 7.47 86.78 0.65 17.77 16 12 O -0.57 -20.75 16.27 -3.90 -0.06 -20.81 16 13 N -0.60 -16.76 3.00 -820.49 -2.46 -19.22 16 14 C 0.13 3.63 6.64 86.50 0.57 4.20 16 15 C 0.05 1.83 5.18 86.54 0.45 2.28 16 16 N -0.52 -19.01 4.83 -898.88 -4.34 -23.35 16 17 C 0.16 6.96 4.20 85.55 0.36 7.32 16 18 C -0.55 -30.44 8.32 25.60 0.21 -30.23 16 19 H 0.03 1.65 6.12 -2.91 -0.02 1.63 16 20 C 0.01 0.44 5.47 84.65 0.46 0.90 16 21 N -0.95 -59.07 13.96 21.45 0.30 -58.77 16 22 Si 0.95 42.26 27.56 68.60 1.89 44.15 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 24 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.24 -9.39 6.41 99.48 0.64 -8.75 16 26 C 0.05 1.53 5.24 86.38 0.45 1.98 16 27 C 0.11 2.49 4.90 86.35 0.42 2.91 16 28 C 0.19 3.97 8.71 85.06 0.74 4.71 16 29 N -0.52 -11.37 9.32 -186.79 -1.74 -13.11 16 30 H 0.07 0.59 7.90 -2.39 -0.02 0.57 16 31 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.12 1.01 8.05 -2.38 -0.02 0.99 16 34 H 0.11 1.52 7.53 -2.39 -0.02 1.50 16 35 H 0.18 4.48 8.01 -2.91 -0.02 4.45 16 36 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.09 2.60 7.04 -2.39 -0.02 2.59 16 38 H 0.00 0.18 6.64 -2.38 -0.02 0.16 16 39 H 0.09 3.00 8.11 -2.39 -0.02 2.98 16 40 H 0.04 1.76 6.81 -2.39 -0.02 1.75 16 41 H 0.03 1.49 7.80 -2.39 -0.02 1.47 16 42 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 43 H 0.00 0.18 7.08 -2.39 -0.02 0.16 16 44 H 0.09 2.89 8.06 -2.39 -0.02 2.87 16 45 H 0.10 2.05 4.43 -2.39 -0.01 2.04 16 46 H 0.12 2.00 7.97 -2.39 -0.02 1.98 16 47 H 0.21 3.05 5.70 -2.91 -0.02 3.04 16 Total: -1.00 -72.98 373.79 -0.38 -73.36 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.92 Total: 18.72 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 7.05 Total: 14.73 kcal Atomic # 7 Polarization: -119.98 SS G_CDS: -10.17 Total: -130.15 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.06 Total: -20.81 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.89 Total: 44.15 kcal Total: -72.98 -0.38 -73.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185126296.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.066 kcal (2) G-P(sol) polarization free energy of solvation -72.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds