Wall clock time and date at job start Tue Mar 31 2020 16:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 115.56250 * 2 1 4 4 C 1.53077 * 117.51235 * 214.30041 * 2 1 3 5 5 C 1.53000 * 59.98583 * 252.52358 * 4 2 1 6 6 H 1.09004 * 117.49974 * 252.50550 * 5 4 2 7 7 C 1.50691 * 117.49996 * 107.49990 * 5 4 2 8 8 N 1.31869 * 118.95141 * 171.25711 * 7 5 4 9 9 C 1.32152 * 120.96967 * 180.02562 * 8 7 5 10 10 C 1.39952 * 118.91988 * 0.02562 * 9 8 7 11 11 C 1.47835 * 120.93712 * 180.02562 * 10 9 8 12 12 O 1.21553 * 119.99970 * 217.98731 * 11 10 9 13 13 N 1.34782 * 119.99883 * 38.25908 * 11 10 9 14 14 C 1.47080 * 120.88244 * 5.29453 * 13 11 10 15 15 C 1.53699 * 108.27557 * 128.74944 * 14 13 11 16 16 N 1.46900 * 109.25443 * 54.08416 * 15 14 13 17 17 C 1.46902 * 110.99555 * 172.60643 * 16 15 14 18 18 C 1.50703 * 109.46980 * 294.29516 * 17 16 15 19 19 H 1.08001 * 120.00052 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99745 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00483 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99724 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47308 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46936 * 120.00687 * 22 20 18 25 25 H 1.48503 * 109.47089 * 240.00358 * 22 20 18 26 26 C 1.46894 * 111.26691 * 296.75186 * 16 15 14 27 27 C 1.47079 * 120.87993 * 185.56460 * 13 11 10 28 28 C 1.39942 * 118.12123 * 0.26834 * 10 9 8 29 29 N 1.31870 * 118.95707 * 351.23523 * 7 5 4 30 30 H 1.08995 * 109.47094 * 274.31043 * 1 2 3 31 31 H 1.09003 * 109.47104 * 34.31361 * 1 2 3 32 32 H 1.09006 * 109.46760 * 154.30566 * 1 2 3 33 33 H 1.08999 * 117.49694 * 145.03701 * 4 2 1 34 34 H 1.08998 * 117.51516 * 359.97438 * 4 2 1 35 35 H 1.07995 * 120.53889 * 180.02562 * 9 8 7 36 36 H 1.08998 * 109.62863 * 248.51868 * 14 13 11 37 37 H 1.09001 * 109.62972 * 9.09634 * 14 13 11 38 38 H 1.08996 * 109.64765 * 294.07317 * 15 14 13 39 39 H 1.09000 * 109.43680 * 173.95671 * 15 14 13 40 40 H 1.08998 * 109.47688 * 54.29739 * 17 16 15 41 41 H 1.08998 * 109.46875 * 174.30491 * 17 16 15 42 42 H 0.96993 * 120.00067 * 179.97438 * 21 20 18 43 43 H 1.09004 * 109.49668 * 303.14412 * 26 16 15 44 44 H 1.09001 * 109.49303 * 183.07143 * 26 16 15 45 45 H 1.09000 * 109.63003 * 350.90352 * 27 13 11 46 46 H 1.09003 * 109.62754 * 111.28584 * 27 13 11 47 47 H 1.08003 * 120.53472 * 179.70603 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2371 -1.1216 -0.7651 5 6 2.2365 -1.1211 0.7649 6 1 3.1713 -0.8751 1.2686 7 6 1.3720 -2.1407 1.4607 8 7 1.4797 -2.2839 2.7671 9 6 0.7416 -3.1662 3.4176 10 6 -0.1633 -3.9541 2.6971 11 6 -1.0113 -4.9543 3.3797 12 8 -1.2406 -6.0222 2.8462 13 7 -1.5346 -4.6800 4.5911 14 6 -1.3714 -3.3515 5.2007 15 6 -2.7567 -2.8473 5.6356 16 7 -3.3890 -3.8531 6.4996 17 6 -4.6372 -3.3393 7.0792 18 6 -4.3250 -2.1987 8.0135 19 1 -3.3018 -1.8865 8.1615 20 6 -5.3459 -1.5531 8.6784 21 7 -6.5920 -1.9330 8.4978 22 14 -4.9590 -0.1389 9.8358 23 1 -3.4923 0.0913 9.8633 24 1 -5.6438 1.0905 9.3615 25 1 -5.4336 -0.4738 11.2025 26 6 -3.6234 -5.1081 5.7731 27 6 -2.2790 -5.7031 5.3411 28 6 -0.2390 -3.7719 1.3117 29 7 0.5317 -2.8610 0.7438 30 1 -0.3633 0.0772 1.0247 31 1 -0.3633 0.8488 -0.5793 32 1 -0.3633 -0.9261 -0.4456 33 1 3.1723 -0.8757 -1.2680 34 1 1.6124 -1.8596 -1.2680 35 1 0.8351 -3.2774 4.4877 36 1 -0.7160 -3.4249 6.0685 37 1 -0.9425 -2.6642 4.4715 38 1 -3.3786 -2.6803 4.7562 39 1 -2.6462 -1.9129 6.1858 40 1 -5.2904 -2.9868 6.2810 41 1 -5.1358 -4.1355 7.6319 42 1 -7.3100 -1.4790 8.9658 43 1 -4.2334 -4.9097 4.8918 44 1 -4.1413 -5.8134 6.4230 45 1 -2.4504 -6.5713 4.7047 46 1 -1.7075 -6.0007 6.2203 47 1 -0.9204 -4.3623 0.7170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185126298.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:50 Heat of formation + Delta-G solvation = 58.350485 kcal Electronic energy + Delta-G solvation = -28145.286336 eV Core-core repulsion = 24329.537583 eV Total energy + Delta-G solvation = -3815.748753 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.70144 -39.92383 -37.98186 -37.55324 -34.74262 -33.99770 -32.81849 -32.21277 -30.70979 -28.93719 -28.36552 -26.30901 -25.25667 -25.01148 -23.33673 -22.49864 -21.83546 -20.98414 -20.62580 -19.26361 -18.22316 -17.20266 -16.96576 -16.45629 -16.11795 -15.87087 -15.46739 -14.86807 -14.71010 -14.55130 -14.27250 -14.05406 -13.96427 -13.84661 -13.62864 -13.38600 -12.93263 -12.65761 -12.52736 -12.30725 -11.99927 -11.91075 -11.58616 -11.40835 -11.25126 -11.18059 -11.01168 -10.85323 -10.83637 -10.65921 -10.58865 -10.39953 -10.02148 -9.91903 -9.58173 -9.47592 -9.32842 -8.65867 -8.52014 -7.43078 -6.11724 -4.14120 0.20752 0.74449 2.51788 2.83473 3.17812 3.25152 3.33178 3.36769 3.39674 3.63658 3.84073 4.15903 4.27128 4.33996 4.38786 4.58509 4.61054 4.65136 4.70046 4.98837 5.06032 5.10978 5.22791 5.27102 5.35654 5.39220 5.46558 5.50229 5.51071 5.56883 5.61248 5.72446 5.73803 5.85000 5.88247 5.93425 6.09316 6.18178 6.32398 6.35224 6.50481 6.57789 7.13238 7.19894 7.30553 7.67490 7.72298 7.92908 7.97522 8.03970 8.39618 8.93175 9.50888 10.99095 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012813 B = 0.002944 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.729976 B = 9507.064511 C =11014.112515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.125 4.125 3 H 0.113 0.887 4 C -0.150 4.150 5 C -0.107 4.107 6 H 0.131 0.869 7 C 0.368 3.632 8 N -0.515 5.515 9 C 0.186 3.814 10 C -0.241 4.241 11 C 0.568 3.432 12 O -0.538 6.538 13 N -0.598 5.598 14 C 0.100 3.900 15 C 0.051 3.949 16 N -0.535 5.535 17 C 0.193 3.807 18 C -0.511 4.511 19 H 0.065 0.935 20 C 0.056 3.944 21 N -0.897 5.897 22 Si 0.898 3.102 23 H -0.271 1.271 24 H -0.285 1.285 25 H -0.283 1.283 26 C 0.040 3.960 27 C 0.119 3.881 28 C 0.206 3.794 29 N -0.516 5.516 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.179 0.821 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.026 0.974 39 H 0.099 0.901 40 H -0.009 1.009 41 H 0.033 0.967 42 H 0.262 0.738 43 H 0.028 0.972 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.077 0.923 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.166 -0.025 -15.532 22.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.144 4.144 3 H 0.131 0.869 4 C -0.187 4.187 5 C -0.127 4.127 6 H 0.149 0.851 7 C 0.103 3.897 8 N -0.228 5.228 9 C 0.019 3.981 10 C -0.249 4.249 11 C 0.355 3.645 12 O -0.416 6.416 13 N -0.331 5.331 14 C -0.023 4.023 15 C -0.078 4.078 16 N -0.260 5.260 17 C 0.069 3.931 18 C -0.549 4.549 19 H 0.083 0.917 20 C -0.146 4.146 21 N -0.536 5.536 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.209 1.209 26 C -0.089 4.089 27 C -0.003 4.003 28 C 0.039 3.961 29 N -0.229 5.229 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.130 0.870 35 H 0.196 0.804 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.044 0.956 39 H 0.117 0.883 40 H 0.009 0.991 41 H 0.051 0.949 42 H 0.071 0.929 43 H 0.046 0.954 44 H 0.102 0.898 45 H 0.109 0.891 46 H 0.096 0.904 47 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 16.730 0.017 -15.804 23.014 hybrid contribution -1.114 0.331 0.721 1.367 sum 15.617 0.347 -15.082 21.714 Atomic orbital electron populations 1.21443 0.92395 1.02898 1.01891 1.22437 0.95957 0.93904 1.02126 0.86865 1.23239 1.02815 1.01281 0.91394 1.20836 0.99744 0.97777 0.94318 0.85143 1.22294 0.89786 0.91329 0.86322 1.68222 1.24790 1.19819 1.09980 1.23700 0.87079 0.86379 1.00896 1.21744 1.03270 1.02495 0.97382 1.17811 0.79637 0.86183 0.80894 1.90781 1.60795 1.25101 1.64954 1.48143 1.53251 1.14224 1.17437 1.22457 0.99678 0.82478 0.97678 1.22399 0.92493 0.97268 0.95623 1.62102 1.29711 1.02720 1.31484 1.19739 0.84164 0.95527 0.93702 1.21160 0.93496 1.15136 1.25121 0.91728 1.24998 0.94936 0.97602 0.97028 1.69961 0.99037 1.41624 1.42992 0.86444 0.78514 0.81864 0.80621 1.19589 1.21099 1.20950 1.22411 0.94915 0.94446 0.97139 1.21843 0.92554 0.90422 0.95491 1.23370 0.92122 0.90005 0.90624 1.68232 1.07084 1.07069 1.40523 0.92794 0.91832 0.91120 0.88108 0.87023 0.80433 0.89849 0.90334 0.95620 0.88251 0.99073 0.94904 0.92864 0.95391 0.89783 0.89097 0.90436 0.80552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 9.07 37.16 0.34 -0.80 16 2 C -0.12 -0.96 6.41 -90.58 -0.58 -1.54 16 3 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.15 -1.09 9.66 -26.69 -0.26 -1.35 16 5 C -0.11 -0.95 6.23 -91.77 -0.57 -1.52 16 6 H 0.13 1.03 8.14 -51.93 -0.42 0.60 16 7 C 0.37 4.18 6.59 -157.07 -1.04 3.14 16 8 N -0.52 -6.15 10.31 -10.40 -0.11 -6.26 16 9 C 0.19 2.10 8.70 -16.77 -0.15 1.96 16 10 C -0.24 -2.95 5.21 -104.69 -0.54 -3.50 16 11 C 0.57 8.08 7.40 -12.33 -0.09 7.99 16 12 O -0.54 -9.05 16.38 5.32 0.09 -8.96 16 13 N -0.60 -8.40 3.00 -173.30 -0.52 -8.92 16 14 C 0.10 1.34 5.04 -3.36 -0.02 1.32 16 15 C 0.05 0.90 5.47 -3.46 -0.02 0.88 16 16 N -0.53 -10.61 4.62 -235.47 -1.09 -11.70 16 17 C 0.19 4.78 4.72 -4.97 -0.02 4.75 16 18 C -0.51 -13.58 8.41 -34.44 -0.29 -13.87 16 19 H 0.06 1.68 7.13 -52.49 -0.37 1.31 16 20 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 21 N -0.90 -25.91 13.29 55.43 0.74 -25.18 16 22 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.04 0.68 5.62 -3.71 -0.02 0.66 16 27 C 0.12 1.71 6.61 -3.61 -0.02 1.68 16 28 C 0.21 2.38 10.95 -16.78 -0.18 2.19 16 29 N -0.52 -5.87 7.94 -10.40 -0.08 -5.96 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.68 6.86 -51.93 -0.36 0.32 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.11 0.92 7.44 -51.93 -0.39 0.53 16 35 H 0.18 1.68 6.43 -52.49 -0.34 1.34 16 36 H 0.08 1.03 8.06 -51.93 -0.42 0.61 16 37 H 0.08 0.93 4.80 -51.93 -0.25 0.68 16 38 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 1.86 6.67 -51.93 -0.35 1.51 16 40 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 41 H 0.03 0.87 7.97 -51.93 -0.41 0.46 16 42 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.08 1.38 7.99 -51.93 -0.41 0.96 16 45 H 0.09 1.28 7.04 -51.93 -0.37 0.92 16 46 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.18 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 377.96 15.07 5.70 5.70 Total: -1.00 -31.13 377.96 -10.89 -42.02 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -7.02 Total: -0.01 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -3.57 Total: 3.43 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -1.06 Total: -58.01 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.13 -10.89 -42.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185126298.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.366 kcal (2) G-P(sol) polarization free energy of solvation -31.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds