Wall clock time and date at job start Tue Mar 31 2020 16:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 115.56250 * 2 1 4 4 C 1.53077 * 117.51235 * 214.30041 * 2 1 3 5 5 C 1.53000 * 59.98583 * 252.52358 * 4 2 1 6 6 H 1.09004 * 117.49974 * 252.50550 * 5 4 2 7 7 C 1.50691 * 117.49996 * 107.49990 * 5 4 2 8 8 N 1.31869 * 118.95141 * 171.25711 * 7 5 4 9 9 C 1.32152 * 120.96967 * 180.02562 * 8 7 5 10 10 C 1.39952 * 118.91988 * 0.02562 * 9 8 7 11 11 C 1.47835 * 120.93712 * 180.02562 * 10 9 8 12 12 O 1.21553 * 119.99970 * 217.98731 * 11 10 9 13 13 N 1.34782 * 119.99883 * 38.25908 * 11 10 9 14 14 C 1.47080 * 120.88244 * 5.29453 * 13 11 10 15 15 C 1.53699 * 108.27557 * 128.74944 * 14 13 11 16 16 N 1.46900 * 109.25443 * 54.08416 * 15 14 13 17 17 C 1.46902 * 110.99555 * 172.60643 * 16 15 14 18 18 C 1.50703 * 109.46980 * 294.29516 * 17 16 15 19 19 H 1.08001 * 120.00052 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99745 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00483 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99724 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47308 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46936 * 120.00687 * 22 20 18 25 25 H 1.48503 * 109.47089 * 240.00358 * 22 20 18 26 26 C 1.46894 * 111.26691 * 296.75186 * 16 15 14 27 27 C 1.47079 * 120.87993 * 185.56460 * 13 11 10 28 28 C 1.39942 * 118.12123 * 0.26834 * 10 9 8 29 29 N 1.31870 * 118.95707 * 351.23523 * 7 5 4 30 30 H 1.08995 * 109.47094 * 274.31043 * 1 2 3 31 31 H 1.09003 * 109.47104 * 34.31361 * 1 2 3 32 32 H 1.09006 * 109.46760 * 154.30566 * 1 2 3 33 33 H 1.08999 * 117.49694 * 145.03701 * 4 2 1 34 34 H 1.08998 * 117.51516 * 359.97438 * 4 2 1 35 35 H 1.07995 * 120.53889 * 180.02562 * 9 8 7 36 36 H 1.08998 * 109.62863 * 248.51868 * 14 13 11 37 37 H 1.09001 * 109.62972 * 9.09634 * 14 13 11 38 38 H 1.08996 * 109.64765 * 294.07317 * 15 14 13 39 39 H 1.09000 * 109.43680 * 173.95671 * 15 14 13 40 40 H 1.08998 * 109.47688 * 54.29739 * 17 16 15 41 41 H 1.08998 * 109.46875 * 174.30491 * 17 16 15 42 42 H 0.96993 * 120.00067 * 179.97438 * 21 20 18 43 43 H 1.09004 * 109.49668 * 303.14412 * 26 16 15 44 44 H 1.09001 * 109.49303 * 183.07143 * 26 16 15 45 45 H 1.09000 * 109.63003 * 350.90352 * 27 13 11 46 46 H 1.09003 * 109.62754 * 111.28584 * 27 13 11 47 47 H 1.08003 * 120.53472 * 179.70603 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2371 -1.1216 -0.7651 5 6 2.2365 -1.1211 0.7649 6 1 3.1713 -0.8751 1.2686 7 6 1.3720 -2.1407 1.4607 8 7 1.4797 -2.2839 2.7671 9 6 0.7416 -3.1662 3.4176 10 6 -0.1633 -3.9541 2.6971 11 6 -1.0113 -4.9543 3.3797 12 8 -1.2406 -6.0222 2.8462 13 7 -1.5346 -4.6800 4.5911 14 6 -1.3714 -3.3515 5.2007 15 6 -2.7567 -2.8473 5.6356 16 7 -3.3890 -3.8531 6.4996 17 6 -4.6372 -3.3393 7.0792 18 6 -4.3250 -2.1987 8.0135 19 1 -3.3018 -1.8865 8.1615 20 6 -5.3459 -1.5531 8.6784 21 7 -6.5920 -1.9330 8.4978 22 14 -4.9590 -0.1389 9.8358 23 1 -3.4923 0.0913 9.8633 24 1 -5.6438 1.0905 9.3615 25 1 -5.4336 -0.4738 11.2025 26 6 -3.6234 -5.1081 5.7731 27 6 -2.2790 -5.7031 5.3411 28 6 -0.2390 -3.7719 1.3117 29 7 0.5317 -2.8610 0.7438 30 1 -0.3633 0.0772 1.0247 31 1 -0.3633 0.8488 -0.5793 32 1 -0.3633 -0.9261 -0.4456 33 1 3.1723 -0.8757 -1.2680 34 1 1.6124 -1.8596 -1.2680 35 1 0.8351 -3.2774 4.4877 36 1 -0.7160 -3.4249 6.0685 37 1 -0.9425 -2.6642 4.4715 38 1 -3.3786 -2.6803 4.7562 39 1 -2.6462 -1.9129 6.1858 40 1 -5.2904 -2.9868 6.2810 41 1 -5.1358 -4.1355 7.6319 42 1 -7.3100 -1.4790 8.9658 43 1 -4.2334 -4.9097 4.8918 44 1 -4.1413 -5.8134 6.4230 45 1 -2.4504 -6.5713 4.7047 46 1 -1.7075 -6.0007 6.2203 47 1 -0.9204 -4.3623 0.7170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185126298.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:49 Heat of formation + Delta-G solvation = 39.085359 kcal Electronic energy + Delta-G solvation = -28146.121735 eV Core-core repulsion = 24329.537583 eV Total energy + Delta-G solvation = -3816.584152 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.61414 -41.05963 -39.08336 -38.53581 -36.17297 -34.97778 -34.49314 -33.46313 -31.94186 -30.10889 -29.54866 -27.67949 -26.44906 -25.99769 -24.64136 -23.97404 -22.83057 -22.21229 -21.35435 -20.49254 -19.17394 -18.51811 -18.26293 -17.81476 -17.24161 -16.77797 -16.55146 -16.49573 -16.04058 -15.73926 -15.44311 -15.34272 -15.21498 -14.99421 -14.74089 -14.35427 -14.12595 -14.01362 -13.57834 -13.31330 -13.27081 -13.06349 -12.78069 -12.67078 -12.64317 -12.50636 -12.35234 -12.29157 -12.15500 -12.00750 -11.78343 -11.55420 -11.28477 -11.08832 -11.02966 -10.63491 -10.47249 -10.32389 -9.88892 -9.11407 -8.21248 -6.31423 -0.69976 -0.13850 1.42423 1.42956 1.43823 1.56610 1.73375 2.36577 2.40488 2.61483 2.83399 3.08092 3.10957 3.15820 3.20888 3.33631 3.74502 3.75466 3.82501 3.92302 3.97636 3.98227 4.16249 4.18160 4.29123 4.35470 4.45449 4.47676 4.55082 4.67382 4.79424 4.81642 4.85810 4.88446 4.92567 4.95790 5.09339 5.12096 5.15803 5.19505 5.22216 5.33026 5.43626 5.63073 5.69322 6.00578 6.11592 6.26263 6.52523 6.83304 6.84771 6.85715 7.38853 8.90334 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012813 B = 0.002944 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.729976 B = 9507.064511 C =11014.112515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.121 4.121 3 H 0.135 0.865 4 C -0.137 4.137 5 C -0.124 4.124 6 H 0.142 0.858 7 C 0.362 3.638 8 N -0.527 5.527 9 C 0.191 3.809 10 C -0.253 4.253 11 C 0.575 3.425 12 O -0.566 6.566 13 N -0.600 5.600 14 C 0.114 3.886 15 C 0.051 3.949 16 N -0.535 5.535 17 C 0.208 3.792 18 C -0.520 4.520 19 H 0.071 0.929 20 C 0.000 4.000 21 N -0.937 5.937 22 Si 0.969 3.031 23 H -0.257 1.257 24 H -0.282 1.282 25 H -0.281 1.281 26 C 0.041 3.959 27 C 0.128 3.872 28 C 0.203 3.797 29 N -0.520 5.520 30 H 0.035 0.965 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.198 0.802 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.010 0.990 39 H 0.088 0.912 40 H -0.042 1.042 41 H 0.008 0.992 42 H 0.264 0.736 43 H 0.014 0.986 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.816 1.157 -15.766 24.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.140 4.140 3 H 0.153 0.847 4 C -0.175 4.175 5 C -0.144 4.144 6 H 0.160 0.840 7 C 0.098 3.902 8 N -0.240 5.240 9 C 0.024 3.976 10 C -0.261 4.261 11 C 0.363 3.637 12 O -0.446 6.446 13 N -0.332 5.332 14 C -0.008 4.008 15 C -0.078 4.078 16 N -0.260 5.260 17 C 0.082 3.918 18 C -0.558 4.558 19 H 0.089 0.911 20 C -0.198 4.198 21 N -0.577 5.577 22 Si 0.794 3.206 23 H -0.181 1.181 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.088 4.088 27 C 0.006 3.994 28 C 0.037 3.963 29 N -0.233 5.233 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.143 0.857 34 H 0.118 0.882 35 H 0.214 0.786 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.029 0.971 39 H 0.106 0.894 40 H -0.025 1.025 41 H 0.026 0.974 42 H 0.072 0.928 43 H 0.032 0.968 44 H 0.104 0.896 45 H 0.114 0.886 46 H 0.112 0.888 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 19.411 1.199 -16.052 25.217 hybrid contribution -1.958 -0.052 0.703 2.081 sum 17.452 1.147 -15.349 23.270 Atomic orbital electron populations 1.21423 0.93492 1.02870 1.00810 1.22540 0.95134 0.94763 1.01570 0.84746 1.23293 1.03511 1.00454 0.90233 1.21039 1.00046 0.97977 0.95304 0.84011 1.22854 0.89563 0.91340 0.86450 1.68313 1.25178 1.20174 1.10323 1.23983 0.86276 0.85615 1.01692 1.21577 1.03951 1.02930 0.97596 1.17985 0.79276 0.86044 0.80426 1.90767 1.61960 1.26402 1.65473 1.48170 1.53162 1.14287 1.17551 1.22400 0.97071 0.82411 0.98932 1.22425 0.94464 0.96568 0.94355 1.62033 1.27020 1.04003 1.32928 1.19386 0.85584 0.94397 0.92476 1.21491 0.93789 1.15445 1.25062 0.91076 1.25930 0.94685 1.00379 0.98772 1.70096 1.00155 1.43192 1.44295 0.85335 0.78975 0.78240 0.78093 1.18091 1.20813 1.20701 1.22467 0.96736 0.93274 0.96306 1.21742 0.91087 0.90326 0.96225 1.23584 0.92103 0.89968 0.90677 1.68325 1.07318 1.07199 1.40450 0.94571 0.90521 0.92306 0.85696 0.88163 0.78557 0.87735 0.88386 0.97141 0.89414 1.02474 0.97436 0.92761 0.96771 0.89561 0.88610 0.88758 0.79749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 9.07 71.98 0.65 -1.46 16 2 C -0.12 -1.59 6.41 -10.77 -0.07 -1.66 16 3 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.14 -1.68 9.66 30.62 0.30 -1.39 16 5 C -0.12 -1.95 6.23 -11.54 -0.07 -2.02 16 6 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 7 C 0.36 7.71 6.59 138.70 0.91 8.62 16 8 N -0.53 -11.64 10.31 -186.80 -1.93 -13.56 16 9 C 0.19 3.94 8.70 85.06 0.74 4.68 16 10 C -0.25 -5.86 5.21 -19.91 -0.10 -5.96 16 11 C 0.57 15.67 7.40 86.78 0.64 16.31 16 12 O -0.57 -18.61 16.38 -3.88 -0.06 -18.67 16 13 N -0.60 -15.98 3.00 -820.46 -2.46 -18.45 16 14 C 0.11 2.85 5.04 86.50 0.44 3.28 16 15 C 0.05 1.77 5.47 86.54 0.47 2.25 16 16 N -0.54 -21.43 4.62 -898.89 -4.15 -25.58 16 17 C 0.21 10.64 4.72 85.56 0.40 11.04 16 18 C -0.52 -27.95 8.41 25.60 0.22 -27.73 16 19 H 0.07 3.66 7.13 -2.91 -0.02 3.64 16 20 C 0.00 0.01 5.46 84.65 0.46 0.48 16 21 N -0.94 -55.37 13.29 21.45 0.28 -55.09 16 22 Si 0.97 42.68 29.54 68.60 2.03 44.70 16 23 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 26 C 0.04 1.41 5.62 86.38 0.49 1.89 16 27 C 0.13 3.53 6.61 86.35 0.57 4.10 16 28 C 0.20 4.54 10.95 85.06 0.93 5.48 16 29 N -0.52 -11.33 7.94 -186.81 -1.48 -12.82 16 30 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 1.09 6.86 -2.38 -0.02 1.08 16 33 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.10 1.49 7.44 -2.39 -0.02 1.48 16 35 H 0.20 3.15 6.43 -2.91 -0.02 3.13 16 36 H 0.10 2.25 8.06 -2.39 -0.02 2.24 16 37 H 0.10 2.11 4.80 -2.39 -0.01 2.10 16 38 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.09 3.26 6.67 -2.39 -0.02 3.25 16 40 H -0.04 -2.42 8.12 -2.39 -0.02 -2.44 16 41 H 0.01 0.42 7.97 -2.39 -0.02 0.40 16 42 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 43 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.09 2.88 7.99 -2.39 -0.02 2.86 16 45 H 0.10 2.61 7.04 -2.39 -0.02 2.59 16 46 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.19 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -68.00 377.96 0.18 -67.82 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.98 Total: 13.73 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: 6.98 Total: 17.92 kcal Atomic # 7 Polarization: -115.75 SS G_CDS: -9.74 Total: -125.50 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.06 Total: -18.67 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -68.00 0.18 -67.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185126298.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.908 kcal (2) G-P(sol) polarization free energy of solvation -68.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds