Wall clock time and date at job start Tue Mar 31 2020 17:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.49632 * 2 1 4 4 C 1.53195 * 109.49901 * 120.06617 * 2 1 3 5 5 N 1.46934 * 108.76857 * 174.55496 * 4 2 1 6 6 C 1.34779 * 120.59943 * 126.42290 * 5 4 2 7 7 O 1.21283 * 120.00225 * 354.37433 * 6 5 4 8 8 C 1.50698 * 119.99738 * 174.37056 * 6 5 4 9 9 C 1.53001 * 115.55286 * 289.62878 * 8 6 5 10 10 C 1.53000 * 109.47068 * 304.19438 * 9 8 6 11 11 F 1.39908 * 109.47150 * 64.19467 * 9 8 6 12 12 F 1.39899 * 109.47273 * 184.19184 * 9 8 6 13 13 C 1.53005 * 117.49892 * 143.95632 * 8 6 5 14 14 C 1.53005 * 117.49763 * 75.29757 * 8 6 5 15 15 C 1.46920 * 118.76784 * 306.44220 * 5 4 2 16 16 C 1.53194 * 108.77545 * 53.59135 * 15 5 4 17 17 C 1.53040 * 109.31184 * 305.36340 * 16 15 5 18 18 H 1.08999 * 109.46421 * 301.34581 * 17 16 15 19 19 C 1.53000 * 109.45117 * 181.37787 * 17 16 15 20 20 N 1.46502 * 109.46910 * 64.93870 * 19 17 16 21 21 C 1.36935 * 120.00021 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99619 * 359.97438 * 21 20 19 23 23 C 1.38809 * 119.99960 * 180.02562 * 21 20 19 24 24 N 1.31619 * 120.00144 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99907 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.46978 * 89.99679 * 25 23 21 27 27 H 1.48504 * 109.47065 * 209.99643 * 25 23 21 28 28 H 1.48497 * 109.47143 * 329.99732 * 25 23 21 29 29 H 1.09000 * 109.46778 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47297 * 300.00028 * 1 2 3 31 31 H 1.09002 * 109.46961 * 60.00260 * 1 2 3 32 32 H 1.08996 * 109.58159 * 294.37521 * 4 2 1 33 33 H 1.08993 * 109.58634 * 54.79592 * 4 2 1 34 34 H 1.08993 * 109.47082 * 65.39571 * 10 9 8 35 35 H 1.09004 * 109.47390 * 185.39886 * 10 9 8 36 36 H 1.09000 * 109.46789 * 305.39564 * 10 9 8 37 37 H 1.08998 * 117.49743 * 0.02562 * 13 8 6 38 38 H 1.09001 * 117.49550 * 145.02583 * 13 8 6 39 39 H 1.09002 * 117.50068 * 214.98067 * 14 8 6 40 40 H 1.08997 * 117.49629 * 359.97438 * 14 8 6 41 41 H 1.09001 * 109.58699 * 293.80663 * 15 5 4 42 42 H 1.08996 * 109.59110 * 173.38132 * 15 5 4 43 43 H 1.09000 * 109.49536 * 185.41465 * 16 15 5 44 44 H 1.08997 * 109.49556 * 65.31429 * 16 15 5 45 45 H 1.08995 * 109.47278 * 184.93985 * 19 17 16 46 46 H 1.08997 * 109.46699 * 304.94161 * 19 17 16 47 47 H 0.97006 * 119.99748 * 0.02562 * 20 19 17 48 48 H 0.96999 * 119.99915 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7235 1.2498 5 7 3.5047 -0.8294 1.1692 6 6 4.2811 -0.3865 2.1779 7 8 3.7816 0.1964 3.1169 8 6 5.7701 -0.6157 2.1391 9 6 6.2200 -2.0650 2.3334 10 6 5.6540 -2.6027 3.6493 11 9 5.7515 -2.8453 1.2708 12 9 7.6175 -2.1185 2.3704 13 6 6.6693 0.4852 2.7054 14 6 6.5951 0.2594 1.1932 15 6 4.1054 -1.4266 -0.0312 16 6 3.5709 -0.6945 -1.2663 17 6 2.0409 -0.7227 -1.2486 18 1 1.6968 -1.7569 -1.2359 19 6 1.5039 -0.0222 -2.4984 20 7 1.8934 -0.7817 -3.6891 21 6 1.5230 -0.3432 -4.9324 22 1 0.9434 0.5623 -5.0351 23 6 1.8916 -1.0631 -6.0605 24 7 2.5974 -2.1670 -5.9353 25 14 1.3869 -0.4646 -7.7566 26 1 2.4354 0.4388 -8.2949 27 1 1.2230 -1.6287 -8.6639 28 1 0.1012 0.2721 -7.6592 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.7638 -0.1574 2.1389 33 1 1.6053 -1.7212 1.2985 34 1 4.5671 -2.6508 3.5845 35 1 6.0515 -3.6005 3.8351 36 1 5.9403 -1.9397 4.4657 37 1 6.1839 1.3749 3.1064 38 1 7.5816 0.1768 3.2160 39 1 7.4586 -0.1974 0.7096 40 1 6.0608 1.0004 0.5987 41 1 3.8376 -2.4817 -0.0876 42 1 5.1896 -1.3245 0.0133 43 1 3.9335 -1.1889 -2.1675 44 1 3.9159 0.3393 -1.2540 45 1 0.4169 0.0356 -2.4438 46 1 1.9189 0.9839 -2.5575 47 1 2.4136 -1.5953 -3.5968 48 1 2.8553 -2.6698 -6.7237 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185159560.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:01 Heat of formation + Delta-G solvation = -102.946084 kcal Electronic energy + Delta-G solvation = -30429.955722 eV Core-core repulsion = 26156.523438 eV Total energy + Delta-G solvation = -4273.432284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.34363 -47.32363 -40.65467 -38.46057 -36.74776 -35.00733 -33.52318 -31.98359 -31.66783 -30.30432 -27.28506 -26.89546 -25.00007 -23.83973 -22.95207 -22.68017 -22.25810 -21.19362 -19.82205 -18.82809 -18.12602 -17.69357 -17.10024 -16.64143 -16.30439 -15.85125 -15.14589 -14.98565 -14.74014 -14.35326 -14.18722 -13.97901 -13.83484 -13.61107 -13.56971 -13.44330 -13.13774 -12.96743 -12.83068 -12.58558 -12.52390 -12.39180 -12.06188 -11.94550 -11.90753 -11.74464 -11.58029 -11.02310 -10.95473 -10.88136 -10.81487 -10.70207 -10.38829 -10.27696 -10.18088 -9.99354 -9.81859 -9.62797 -8.85932 -8.63830 -6.89931 -5.76310 -3.04255 2.21064 2.70437 3.08669 3.35822 3.43445 3.48822 3.50293 3.75467 3.90551 4.16684 4.20004 4.53587 4.58738 4.60214 4.83837 4.93304 4.95851 5.09231 5.17481 5.20257 5.25542 5.32905 5.33959 5.47516 5.49062 5.52276 5.57221 5.60856 5.67790 5.70498 5.77972 5.86972 5.94269 5.99296 6.08427 6.21566 6.28641 6.33178 6.45301 6.49221 6.64267 6.83744 6.93563 7.26909 7.70504 7.94915 8.43047 9.54184 10.12697 10.47286 11.46642 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.016230 B = 0.003189 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.745521 B = 8779.320781 C = 9697.972280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 H 0.072 0.928 4 C 0.117 3.883 5 N -0.596 5.596 6 C 0.558 3.442 7 O -0.536 6.536 8 C -0.220 4.220 9 C 0.333 3.667 10 C -0.189 4.189 11 F -0.187 7.187 12 F -0.193 7.193 13 C -0.123 4.123 14 C -0.145 4.145 15 C 0.103 3.897 16 C -0.126 4.126 17 C -0.089 4.089 18 H 0.072 0.928 19 C 0.157 3.843 20 N -0.732 5.732 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.014 4.014 24 N -0.934 5.934 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.062 0.938 45 H 0.024 0.976 46 H 0.016 0.984 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.002 1.289 21.017 22.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.005 4.005 5 N -0.327 5.327 6 C 0.344 3.656 7 O -0.413 6.413 8 C -0.224 4.224 9 C 0.297 3.703 10 C -0.247 4.247 11 F -0.168 7.168 12 F -0.174 7.174 13 C -0.161 4.161 14 C -0.182 4.182 15 C -0.019 4.019 16 C -0.164 4.164 17 C -0.108 4.108 18 H 0.091 0.909 19 C 0.030 3.970 20 N -0.376 5.376 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.583 5.583 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.080 0.920 45 H 0.042 0.958 46 H 0.033 0.967 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.663 1.652 21.345 22.422 hybrid contribution 0.014 -0.181 -1.285 1.297 sum 6.677 1.471 20.061 21.194 Atomic orbital electron populations 1.21831 0.94324 1.02220 1.02069 1.21450 0.96147 0.99882 0.94121 0.90929 1.21771 0.78313 1.01050 0.99394 1.48090 1.06997 1.59562 1.18038 1.18897 0.85801 0.78607 0.82262 1.90689 1.74333 1.41683 1.34623 1.22351 0.93770 0.92844 1.13448 1.20026 0.75405 0.87886 0.87004 1.22716 1.03622 1.03508 0.94825 1.93062 1.88082 1.76463 1.59181 1.93011 1.30504 1.96909 1.96936 1.23106 0.99193 0.97366 0.96396 1.23237 1.00907 1.00460 0.93593 1.22179 0.98623 0.97492 0.83579 1.21968 0.96009 1.00995 0.97465 1.21347 0.94785 1.00193 0.94483 0.90933 1.20746 0.96627 0.94018 0.85658 1.42379 1.65426 1.28975 1.00820 1.19223 1.27670 1.06177 0.83860 0.91318 1.24713 1.00970 0.97506 0.97759 1.69651 1.42814 1.17274 1.28519 0.86212 0.78050 0.77464 0.84610 1.21775 1.21792 1.20817 0.92474 0.93012 0.91264 0.89181 0.91250 0.89380 0.89598 0.88876 0.86830 0.86963 0.86805 0.87059 0.90775 0.89289 0.89188 0.91958 0.95836 0.96651 0.78293 0.93552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.82 37.16 0.33 -1.42 16 2 C -0.10 -1.25 2.41 -90.50 -0.22 -1.47 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 4 C 0.12 1.43 5.73 -3.70 -0.02 1.40 16 5 N -0.60 -7.48 2.97 -172.77 -0.51 -7.99 16 6 C 0.56 7.15 5.99 -10.99 -0.07 7.08 16 7 O -0.54 -8.17 16.24 5.55 0.09 -8.08 16 8 C -0.22 -2.31 0.85 -155.66 -0.13 -2.44 16 9 C 0.33 3.41 2.09 -26.73 -0.06 3.35 16 10 C -0.19 -1.60 9.05 37.16 0.34 -1.27 16 11 F -0.19 -2.20 13.37 2.25 0.03 -2.17 16 12 F -0.19 -2.00 15.64 2.25 0.04 -1.96 16 13 C -0.12 -1.07 9.50 -26.69 -0.25 -1.33 16 14 C -0.14 -1.34 8.42 -26.69 -0.22 -1.56 16 15 C 0.10 1.31 4.59 -3.71 -0.02 1.30 16 16 C -0.13 -1.87 5.25 -26.61 -0.14 -2.01 16 17 C -0.09 -1.38 1.73 -90.57 -0.16 -1.53 16 18 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 19 C 0.16 3.07 5.41 -4.04 -0.02 3.04 16 20 N -0.73 -18.09 5.32 -59.91 -0.32 -18.41 16 21 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 22 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -27.92 13.06 55.49 0.72 -27.19 16 25 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.90 6.30 -51.93 -0.33 0.57 16 32 H 0.09 1.13 7.00 -51.93 -0.36 0.77 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.80 7.66 -51.93 -0.40 0.41 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.11 1.02 8.08 -51.93 -0.42 0.60 16 38 H 0.11 0.81 7.66 -51.93 -0.40 0.41 16 39 H 0.11 0.97 7.91 -51.93 -0.41 0.56 16 40 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.07 0.95 7.79 -51.93 -0.40 0.55 16 42 H 0.09 1.07 4.18 -51.93 -0.22 0.85 16 43 H 0.09 1.54 7.15 -51.93 -0.37 1.17 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.02 0.47 6.14 -51.93 -0.32 0.15 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.38 9.88 6.84 -40.82 -0.28 9.60 16 48 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 377.05 15.07 5.68 5.68 Total: -1.00 -31.34 377.05 -7.86 -39.20 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -7.68 Total: 7.71 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -0.89 Total: -4.10 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.11 Total: -53.59 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.09 Total: -8.08 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.07 Total: -4.13 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.34 -7.86 -39.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185159560.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.743 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds