Wall clock time and date at job start Tue Mar 31 2020 17:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.49632 * 2 1 4 4 C 1.53195 * 109.49901 * 120.06617 * 2 1 3 5 5 N 1.46934 * 108.76857 * 174.55496 * 4 2 1 6 6 C 1.34779 * 120.59943 * 126.42290 * 5 4 2 7 7 O 1.21283 * 120.00225 * 354.37433 * 6 5 4 8 8 C 1.50698 * 119.99738 * 174.37056 * 6 5 4 9 9 C 1.53001 * 115.55286 * 289.62878 * 8 6 5 10 10 C 1.53000 * 109.47068 * 304.19438 * 9 8 6 11 11 F 1.39908 * 109.47150 * 64.19467 * 9 8 6 12 12 F 1.39899 * 109.47273 * 184.19184 * 9 8 6 13 13 C 1.53005 * 117.49892 * 143.95632 * 8 6 5 14 14 C 1.53005 * 117.49763 * 75.29757 * 8 6 5 15 15 C 1.46920 * 118.76784 * 306.44220 * 5 4 2 16 16 C 1.53194 * 108.77545 * 53.59135 * 15 5 4 17 17 C 1.53040 * 109.31184 * 305.36340 * 16 15 5 18 18 H 1.08999 * 109.46421 * 301.34581 * 17 16 15 19 19 C 1.53000 * 109.45117 * 181.37787 * 17 16 15 20 20 N 1.46502 * 109.46910 * 64.93870 * 19 17 16 21 21 C 1.36935 * 120.00021 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99619 * 359.97438 * 21 20 19 23 23 C 1.38809 * 119.99960 * 180.02562 * 21 20 19 24 24 N 1.31619 * 120.00144 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99907 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.46978 * 89.99679 * 25 23 21 27 27 H 1.48504 * 109.47065 * 209.99643 * 25 23 21 28 28 H 1.48497 * 109.47143 * 329.99732 * 25 23 21 29 29 H 1.09000 * 109.46778 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47297 * 300.00028 * 1 2 3 31 31 H 1.09002 * 109.46961 * 60.00260 * 1 2 3 32 32 H 1.08996 * 109.58159 * 294.37521 * 4 2 1 33 33 H 1.08993 * 109.58634 * 54.79592 * 4 2 1 34 34 H 1.08993 * 109.47082 * 65.39571 * 10 9 8 35 35 H 1.09004 * 109.47390 * 185.39886 * 10 9 8 36 36 H 1.09000 * 109.46789 * 305.39564 * 10 9 8 37 37 H 1.08998 * 117.49743 * 0.02562 * 13 8 6 38 38 H 1.09001 * 117.49550 * 145.02583 * 13 8 6 39 39 H 1.09002 * 117.50068 * 214.98067 * 14 8 6 40 40 H 1.08997 * 117.49629 * 359.97438 * 14 8 6 41 41 H 1.09001 * 109.58699 * 293.80663 * 15 5 4 42 42 H 1.08996 * 109.59110 * 173.38132 * 15 5 4 43 43 H 1.09000 * 109.49536 * 185.41465 * 16 15 5 44 44 H 1.08997 * 109.49556 * 65.31429 * 16 15 5 45 45 H 1.08995 * 109.47278 * 184.93985 * 19 17 16 46 46 H 1.08997 * 109.46699 * 304.94161 * 19 17 16 47 47 H 0.97006 * 119.99748 * 0.02562 * 20 19 17 48 48 H 0.96999 * 119.99915 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7235 1.2498 5 7 3.5047 -0.8294 1.1692 6 6 4.2811 -0.3865 2.1779 7 8 3.7816 0.1964 3.1169 8 6 5.7701 -0.6157 2.1391 9 6 6.2200 -2.0650 2.3334 10 6 5.6540 -2.6027 3.6493 11 9 5.7515 -2.8453 1.2708 12 9 7.6175 -2.1185 2.3704 13 6 6.6693 0.4852 2.7054 14 6 6.5951 0.2594 1.1932 15 6 4.1054 -1.4266 -0.0312 16 6 3.5709 -0.6945 -1.2663 17 6 2.0409 -0.7227 -1.2486 18 1 1.6968 -1.7569 -1.2359 19 6 1.5039 -0.0222 -2.4984 20 7 1.8934 -0.7817 -3.6891 21 6 1.5230 -0.3432 -4.9324 22 1 0.9434 0.5623 -5.0351 23 6 1.8916 -1.0631 -6.0605 24 7 2.5974 -2.1670 -5.9353 25 14 1.3869 -0.4646 -7.7566 26 1 2.4354 0.4388 -8.2949 27 1 1.2230 -1.6287 -8.6639 28 1 0.1012 0.2721 -7.6592 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.7638 -0.1574 2.1389 33 1 1.6053 -1.7212 1.2985 34 1 4.5671 -2.6508 3.5845 35 1 6.0515 -3.6005 3.8351 36 1 5.9403 -1.9397 4.4657 37 1 6.1839 1.3749 3.1064 38 1 7.5816 0.1768 3.2160 39 1 7.4586 -0.1974 0.7096 40 1 6.0608 1.0004 0.5987 41 1 3.8376 -2.4817 -0.0876 42 1 5.1896 -1.3245 0.0133 43 1 3.9335 -1.1889 -2.1675 44 1 3.9159 0.3393 -1.2540 45 1 0.4169 0.0356 -2.4438 46 1 1.9189 0.9839 -2.5575 47 1 2.4136 -1.5953 -3.5968 48 1 2.8553 -2.6698 -6.7237 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185159560.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:00 Heat of formation + Delta-G solvation = -120.414327 kcal Electronic energy + Delta-G solvation = -30430.713202 eV Core-core repulsion = 26156.523438 eV Total energy + Delta-G solvation = -4274.189764 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.15981 -48.14947 -41.67085 -39.59043 -37.65716 -36.57931 -34.95994 -33.43967 -32.40324 -31.99389 -28.49778 -28.18038 -26.01868 -25.36383 -24.10451 -23.57976 -23.26737 -22.54496 -21.01944 -19.78476 -19.21926 -18.95311 -18.50392 -17.49450 -17.29100 -16.78313 -16.71572 -16.13245 -15.88125 -15.65962 -15.42898 -15.29357 -15.02282 -14.82456 -14.48334 -14.42196 -14.28060 -14.16604 -13.89067 -13.81626 -13.53646 -13.25726 -13.10175 -12.97218 -12.92844 -12.84664 -12.74261 -12.67363 -12.58317 -12.17705 -11.97817 -11.89372 -11.75453 -11.65220 -11.56114 -11.36674 -11.19187 -10.95459 -10.82646 -9.72607 -8.95637 -7.93656 -5.21427 1.23983 1.47857 1.48905 1.57364 1.75251 2.31715 2.56423 2.57205 2.99090 3.07771 3.31326 3.39830 3.46700 3.67306 3.72436 3.78022 3.83883 3.89711 3.99239 4.23256 4.28328 4.36605 4.43537 4.51195 4.53604 4.56529 4.62050 4.62739 4.66666 4.75130 4.76926 4.81985 4.87229 4.89821 4.98767 5.01837 5.09495 5.11141 5.19274 5.26065 5.35057 5.46661 5.51833 5.58060 6.24066 6.29105 6.93819 7.35752 8.12365 8.36173 9.29721 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.016230 B = 0.003189 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.745521 B = 8779.320781 C = 9697.972280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 H 0.067 0.933 4 C 0.119 3.881 5 N -0.596 5.596 6 C 0.560 3.440 7 O -0.561 6.561 8 C -0.233 4.233 9 C 0.331 3.669 10 C -0.187 4.187 11 F -0.198 7.198 12 F -0.193 7.193 13 C -0.109 4.109 14 C -0.144 4.144 15 C 0.116 3.884 16 C -0.120 4.120 17 C -0.079 4.079 18 H 0.067 0.933 19 C 0.157 3.843 20 N -0.742 5.742 21 C -0.245 4.245 22 H 0.072 0.928 23 C -0.072 4.072 24 N -0.967 5.967 25 Si 0.970 3.030 26 H -0.288 1.288 27 H -0.295 1.295 28 H -0.271 1.271 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.130 0.870 39 H 0.122 0.878 40 H 0.107 0.893 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.027 0.973 46 H 0.011 0.989 47 H 0.375 0.625 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.123 1.757 22.156 23.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 H 0.085 0.915 4 C -0.003 4.003 5 N -0.327 5.327 6 C 0.347 3.653 7 O -0.440 6.440 8 C -0.237 4.237 9 C 0.295 3.705 10 C -0.244 4.244 11 F -0.179 7.179 12 F -0.173 7.173 13 C -0.146 4.146 14 C -0.181 4.181 15 C -0.007 4.007 16 C -0.158 4.158 17 C -0.098 4.098 18 H 0.086 0.914 19 C 0.031 3.969 20 N -0.385 5.385 21 C -0.377 4.377 22 H 0.090 0.910 23 C -0.264 4.264 24 N -0.618 5.618 25 Si 0.799 3.201 26 H -0.215 1.215 27 H -0.222 1.222 28 H -0.196 1.196 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.130 0.870 38 H 0.149 0.851 39 H 0.140 0.860 40 H 0.125 0.875 41 H 0.093 0.907 42 H 0.116 0.884 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.045 0.955 46 H 0.029 0.971 47 H 0.207 0.793 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.768 2.148 22.507 23.601 hybrid contribution -0.033 -0.276 -1.596 1.620 sum 6.735 1.872 20.911 22.048 Atomic orbital electron populations 1.21799 0.93256 1.02638 1.02433 1.21346 0.96974 0.99186 0.93086 0.91490 1.21775 0.78234 1.01596 0.98695 1.48124 1.07240 1.59406 1.17939 1.19195 0.86666 0.77765 0.81648 1.90674 1.75067 1.42785 1.35457 1.22322 0.92471 0.93646 1.15250 1.20182 0.75407 0.87592 0.87367 1.22729 1.03033 1.04542 0.94117 1.93037 1.88240 1.76758 1.59905 1.93008 1.30504 1.96888 1.96945 1.23198 0.99114 0.96346 0.95950 1.23297 1.00753 0.99991 0.94093 1.22026 0.98995 0.97035 0.82597 1.21847 0.95599 1.00822 0.97538 1.21229 0.95083 0.99659 0.93810 0.91446 1.20878 0.96778 0.93548 0.85672 1.42562 1.65271 1.29089 1.01575 1.19604 1.26873 1.05994 0.85230 0.91024 1.25492 1.01660 0.97951 1.01330 1.69801 1.44334 1.18533 1.29112 0.85197 0.78037 0.76777 0.80099 1.21491 1.22151 1.19608 0.92046 0.91015 0.92504 0.89024 0.90072 0.90160 0.88220 0.87836 0.87037 0.85143 0.85973 0.87478 0.90706 0.88431 0.91738 0.92180 0.95507 0.97142 0.79251 0.94020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.82 71.98 0.63 -2.58 16 2 C -0.09 -2.14 2.41 -10.71 -0.03 -2.17 16 3 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 4 C 0.12 2.73 5.73 86.36 0.49 3.22 16 5 N -0.60 -14.32 2.97 -818.90 -2.43 -16.76 16 6 C 0.56 13.64 5.99 87.66 0.53 14.17 16 7 O -0.56 -16.40 16.24 -3.04 -0.05 -16.45 16 8 C -0.23 -4.53 0.85 -52.92 -0.04 -4.58 16 9 C 0.33 6.24 2.09 30.59 0.06 6.30 16 10 C -0.19 -2.83 9.05 71.98 0.65 -2.18 16 11 F -0.20 -4.43 13.37 44.97 0.60 -3.83 16 12 F -0.19 -3.62 15.64 44.97 0.70 -2.92 16 13 C -0.11 -1.68 9.50 30.62 0.29 -1.39 16 14 C -0.14 -2.45 8.42 30.62 0.26 -2.19 16 15 C 0.12 2.87 4.59 86.36 0.40 3.27 16 16 C -0.12 -3.57 5.25 30.67 0.16 -3.41 16 17 C -0.08 -2.42 1.73 -10.76 -0.02 -2.44 16 18 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 19 C 0.16 6.17 5.41 86.38 0.47 6.64 16 20 N -0.74 -37.19 5.32 -343.46 -1.83 -39.01 16 21 C -0.25 -13.67 9.99 84.03 0.84 -12.83 16 22 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 23 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 24 N -0.97 -58.64 13.06 21.65 0.28 -58.35 16 25 Si 0.97 46.01 29.55 68.60 2.03 48.04 16 26 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 27 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 28 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.41 6.30 -2.39 -0.02 1.40 16 32 H 0.09 2.15 7.00 -2.39 -0.02 2.13 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 1.35 7.66 -2.39 -0.02 1.34 16 35 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.11 1.80 8.08 -2.39 -0.02 1.79 16 38 H 0.13 1.53 7.66 -2.39 -0.02 1.52 16 39 H 0.12 1.88 7.91 -2.39 -0.02 1.86 16 40 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.07 1.88 7.79 -2.39 -0.02 1.86 16 42 H 0.10 2.28 4.18 -2.39 -0.01 2.27 16 43 H 0.06 2.27 7.15 -2.39 -0.02 2.26 16 44 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.03 1.06 6.14 -2.39 -0.01 1.04 16 46 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 47 H 0.37 19.82 6.84 -92.70 -0.63 19.19 16 48 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -66.24 377.05 4.80 -61.44 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: 0.33 Total: 31.66 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 5.16 Total: -3.81 kcal Atomic # 7 Polarization: -110.15 SS G_CDS: -3.98 Total: -114.12 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.05 Total: -16.45 kcal Atomic # 9 Polarization: -8.05 SS G_CDS: 1.30 Total: -6.75 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -66.24 4.80 -61.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185159560.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.975 kcal (2) G-P(sol) polarization free energy of solvation -66.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds