Wall clock time and date at job start Tue Mar 31 2020 17:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.49441 * 2 1 4 4 C 1.53191 * 109.49445 * 120.05674 * 2 1 3 5 5 N 1.46933 * 108.89134 * 65.28332 * 4 2 1 6 6 C 1.34775 * 120.62912 * 233.68132 * 5 4 2 7 7 O 1.21287 * 119.99919 * 354.43599 * 6 5 4 8 8 C 1.50698 * 119.99925 * 174.44065 * 6 5 4 9 9 C 1.52999 * 115.54800 * 284.16181 * 8 6 5 10 10 C 1.52999 * 109.47143 * 303.65970 * 9 8 6 11 11 F 1.39900 * 109.47181 * 63.66073 * 9 8 6 12 12 F 1.39897 * 109.46859 * 183.66012 * 9 8 6 13 13 C 1.53002 * 117.49894 * 138.49288 * 8 6 5 14 14 C 1.52997 * 117.49951 * 69.83242 * 8 6 5 15 15 C 1.47200 * 118.55702 * 53.53661 * 5 4 2 16 16 C 1.53199 * 108.85423 * 306.48239 * 15 5 4 17 17 C 1.53033 * 109.52819 * 239.91412 * 2 1 3 18 18 H 1.09001 * 109.46106 * 181.38000 * 17 2 1 19 19 C 1.53008 * 109.45975 * 61.40448 * 17 2 1 20 20 N 1.46498 * 109.47025 * 175.00112 * 19 17 2 21 21 C 1.36936 * 119.99737 * 180.02562 * 20 19 17 22 22 H 1.07996 * 120.00173 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99962 * 180.02562 * 21 20 19 24 24 N 1.31622 * 120.00098 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00222 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46819 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46903 * 119.99506 * 25 23 21 28 28 H 1.48494 * 109.47497 * 240.00027 * 25 23 21 29 29 H 1.08999 * 109.47428 * 299.93714 * 1 2 3 30 30 H 1.09003 * 109.47131 * 59.94217 * 1 2 3 31 31 H 1.09002 * 109.46875 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.58913 * 185.13454 * 4 2 1 33 33 H 1.08994 * 109.59008 * 305.42256 * 4 2 1 34 34 H 1.08995 * 109.47570 * 55.50658 * 10 9 8 35 35 H 1.08998 * 109.46907 * 175.51127 * 10 9 8 36 36 H 1.09004 * 109.47222 * 295.50670 * 10 9 8 37 37 H 1.08996 * 117.50048 * 359.97438 * 13 8 6 38 38 H 1.09007 * 117.49900 * 145.01803 * 13 8 6 39 39 H 1.08994 * 117.50105 * 214.97767 * 14 8 6 40 40 H 1.09003 * 117.50040 * 0.02562 * 14 8 6 41 41 H 1.08994 * 109.53608 * 186.67775 * 15 5 4 42 42 H 1.09001 * 109.56191 * 66.29656 * 15 5 4 43 43 H 1.09007 * 109.49231 * 294.69893 * 16 15 5 44 44 H 1.08996 * 109.49508 * 174.60676 * 16 15 5 45 45 H 1.09004 * 109.46799 * 295.00308 * 19 17 2 46 46 H 1.08999 * 109.47115 * 54.99856 * 19 17 2 47 47 H 0.96996 * 120.00176 * 359.97438 * 20 19 17 48 48 H 0.97002 * 120.00159 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7233 1.2499 5 7 1.6520 -2.1381 1.1735 6 6 0.9745 -2.7194 2.1832 7 8 0.7684 -2.1046 3.2082 8 6 0.4732 -4.1332 2.0386 9 6 -0.7653 -4.3072 1.1573 10 6 -1.8973 -3.4257 1.6887 11 9 -0.4598 -3.9329 -0.1556 12 9 -1.1681 -5.6468 1.1785 13 6 0.6164 -5.0605 3.2471 14 6 1.5147 -5.2538 2.0228 15 6 2.0154 -2.9038 -0.0300 16 6 1.5044 -2.1559 -1.2656 17 6 2.0415 -0.7230 -1.2480 18 1 3.1313 -0.7438 -1.2346 19 6 1.5612 0.0165 -2.4984 20 7 2.1479 -0.6044 -3.6885 21 6 1.8596 -0.1086 -4.9320 22 1 1.1995 0.7398 -5.0354 23 6 2.4151 -0.6972 -6.0598 24 7 3.2193 -1.7316 -5.9339 25 14 2.0214 -0.0214 -7.7561 26 1 1.1002 1.1362 -7.6262 27 1 3.2765 0.4174 -8.4177 28 1 1.3751 -1.0797 -8.5730 29 1 -0.3634 0.5128 0.8905 30 1 -0.3633 0.5147 -0.8895 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1273 -0.6453 1.2987 33 1 1.6021 -0.2710 2.1391 34 1 -1.5562 -2.3922 1.7473 35 1 -2.7528 -3.4884 1.0162 36 1 -2.1896 -3.7687 2.6812 37 1 1.0735 -4.6482 4.1466 38 1 -0.1717 -5.7949 3.4141 39 1 1.3174 -6.1153 1.3850 40 1 2.5625 -4.9686 2.1175 41 1 1.5572 -3.8918 0.0144 42 1 3.0994 -3.0035 -0.0857 43 1 0.4146 -2.1362 -1.2540 44 1 1.8500 -2.6630 -2.1665 45 1 0.4742 -0.0389 -2.5581 46 1 1.8693 1.0606 -2.4439 47 1 2.7411 -1.3662 -3.5957 48 1 3.6078 -2.1426 -6.7219 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185159561.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:04 Heat of formation + Delta-G solvation = -99.969645 kcal Electronic energy + Delta-G solvation = -31048.210911 eV Core-core repulsion = 26774.907696 eV Total energy + Delta-G solvation = -4273.303216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.27146 -47.24720 -40.71330 -38.55737 -36.75541 -34.95115 -33.31053 -31.76437 -31.57929 -30.29888 -27.24561 -26.98057 -25.06853 -23.78979 -23.17624 -22.68150 -22.60377 -21.17428 -19.46234 -18.63105 -17.88750 -17.62347 -17.00127 -16.62133 -16.30376 -15.82947 -15.23785 -14.94168 -14.68523 -14.46905 -14.14468 -14.01578 -13.88157 -13.69961 -13.49883 -13.41281 -13.07405 -12.94231 -12.75595 -12.58214 -12.39442 -12.31326 -12.18353 -12.01906 -11.91870 -11.57206 -11.36734 -11.03765 -10.98665 -10.91108 -10.76674 -10.64313 -10.33827 -10.22797 -10.13207 -9.96163 -9.77597 -9.62500 -8.84739 -8.63388 -6.88493 -5.75241 -3.02889 2.21622 2.72501 3.07361 3.39815 3.44034 3.49898 3.51891 3.81585 3.95125 4.16471 4.20867 4.58152 4.60093 4.64389 4.85200 4.94072 5.00763 5.10974 5.20029 5.22815 5.25131 5.29102 5.39024 5.45331 5.56103 5.56439 5.59658 5.63591 5.66827 5.70150 5.78415 5.87205 5.90083 6.09530 6.11997 6.20526 6.31634 6.38816 6.46927 6.55488 6.70914 6.84148 6.97613 7.28252 7.72330 7.95990 8.44231 9.55460 10.14230 10.48760 11.47858 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.017231 B = 0.003416 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.592298 B = 8195.776662 C = 8811.080534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.082 0.918 4 C 0.116 3.884 5 N -0.592 5.592 6 C 0.559 3.441 7 O -0.536 6.536 8 C -0.217 4.217 9 C 0.333 3.667 10 C -0.190 4.190 11 F -0.181 7.181 12 F -0.194 7.194 13 C -0.124 4.124 14 C -0.148 4.148 15 C 0.100 3.900 16 C -0.125 4.125 17 C -0.089 4.089 18 H 0.070 0.930 19 C 0.159 3.841 20 N -0.732 5.732 21 C -0.236 4.236 22 H 0.069 0.931 23 C -0.014 4.014 24 N -0.934 5.934 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.021 0.979 46 H 0.016 0.984 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.829 -6.138 20.286 21.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.101 0.899 4 C -0.006 4.006 5 N -0.324 5.324 6 C 0.345 3.655 7 O -0.413 6.413 8 C -0.222 4.222 9 C 0.296 3.704 10 C -0.248 4.248 11 F -0.162 7.162 12 F -0.175 7.175 13 C -0.161 4.161 14 C -0.185 4.185 15 C -0.022 4.022 16 C -0.163 4.163 17 C -0.108 4.108 18 H 0.089 0.911 19 C 0.032 3.968 20 N -0.376 5.376 21 C -0.368 4.368 22 H 0.087 0.913 23 C -0.210 4.210 24 N -0.583 5.583 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.109 0.891 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.104 0.896 45 H 0.039 0.961 46 H 0.034 0.966 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.008 -5.710 20.649 22.250 hybrid contribution 0.081 -0.003 -1.341 1.343 sum -5.927 -5.712 19.309 20.990 Atomic orbital electron populations 1.21890 0.95009 1.02016 1.01483 1.21467 0.96621 0.99459 0.94188 0.89944 1.21735 0.99666 0.79872 0.99277 1.48103 1.54578 1.11636 1.18037 1.18872 0.77868 0.85542 0.83231 1.90692 1.58090 1.64188 1.28365 1.22351 1.00117 0.93535 1.06148 1.20002 0.92972 0.78257 0.79167 1.22727 0.97385 1.00938 1.03704 1.93074 1.93795 1.90983 1.38338 1.93007 1.91512 1.36395 1.96542 1.23097 1.02355 0.98583 0.92104 1.23234 0.96364 0.97539 1.01367 1.22145 1.00177 0.95858 0.84054 1.21959 1.01896 0.95516 0.96919 1.21322 1.00189 0.94903 0.94412 0.91126 1.20704 0.95902 0.94552 0.85688 1.42383 1.56766 1.37591 1.00851 1.19273 1.22892 1.10731 0.83860 0.91264 1.24712 1.00159 0.98388 0.97754 1.69663 1.35810 1.24428 1.28389 0.86143 0.77396 0.77996 0.84835 1.20611 1.21931 1.21904 0.93431 0.91802 0.92514 0.91337 0.89239 0.89236 0.89561 0.89014 0.86974 0.86963 0.86830 0.87223 0.89128 0.91356 0.90748 0.89550 0.96104 0.96585 0.78303 0.93635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.38 37.16 0.31 -1.57 16 2 C -0.10 -1.25 2.72 -90.50 -0.25 -1.50 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.12 1.40 5.80 -3.71 -0.02 1.38 16 5 N -0.59 -7.24 2.43 -172.54 -0.42 -7.66 16 6 C 0.56 7.02 5.76 -10.99 -0.06 6.95 16 7 O -0.54 -8.03 16.38 5.55 0.09 -7.94 16 8 C -0.22 -2.26 0.83 -155.66 -0.13 -2.39 16 9 C 0.33 3.63 2.09 -26.73 -0.06 3.57 16 10 C -0.19 -1.81 9.24 37.16 0.34 -1.47 16 11 F -0.18 -2.35 12.56 2.25 0.03 -2.32 16 12 F -0.19 -2.12 15.64 2.25 0.04 -2.09 16 13 C -0.12 -1.04 9.54 -26.69 -0.25 -1.29 16 14 C -0.15 -1.26 8.28 -26.69 -0.22 -1.48 16 15 C 0.10 1.24 5.31 -3.56 -0.02 1.22 16 16 C -0.12 -1.88 4.54 -26.61 -0.12 -2.00 16 17 C -0.09 -1.38 1.96 -90.58 -0.18 -1.56 16 18 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 19 C 0.16 3.13 5.19 -4.04 -0.02 3.11 16 20 N -0.73 -18.20 5.32 -59.91 -0.32 -18.52 16 21 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 25 Si 0.90 22.43 29.55 -169.99 -5.02 17.41 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.86 6.59 -51.93 -0.34 0.52 16 31 H 0.06 0.77 5.98 -51.93 -0.31 0.45 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 1.11 7.04 -51.93 -0.37 0.74 16 34 H 0.09 0.95 7.30 -51.93 -0.38 0.57 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.11 0.80 7.67 -51.92 -0.40 0.40 16 39 H 0.11 0.90 7.89 -51.93 -0.41 0.49 16 40 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.09 1.07 3.83 -51.93 -0.20 0.87 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 1.17 5.07 -51.93 -0.26 0.91 16 44 H 0.09 1.52 7.15 -51.93 -0.37 1.14 16 45 H 0.02 0.42 6.74 -51.93 -0.35 0.07 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.38 9.93 6.84 -40.82 -0.28 9.65 16 48 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -31.57 371.04 -7.65 -39.22 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -7.44 Total: 7.88 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -0.92 Total: -4.29 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.01 Total: -53.47 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.09 Total: -7.94 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.06 Total: -4.41 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.57 -7.65 -39.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185159561.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.749 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds