Wall clock time and date at job start Tue Mar 31 2020 17:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.49441 * 2 1 4 4 C 1.53191 * 109.49445 * 120.05674 * 2 1 3 5 5 N 1.46933 * 108.89134 * 65.28332 * 4 2 1 6 6 C 1.34775 * 120.62912 * 233.68132 * 5 4 2 7 7 O 1.21287 * 119.99919 * 354.43599 * 6 5 4 8 8 C 1.50698 * 119.99925 * 174.44065 * 6 5 4 9 9 C 1.52999 * 115.54800 * 284.16181 * 8 6 5 10 10 C 1.52999 * 109.47143 * 303.65970 * 9 8 6 11 11 F 1.39900 * 109.47181 * 63.66073 * 9 8 6 12 12 F 1.39897 * 109.46859 * 183.66012 * 9 8 6 13 13 C 1.53002 * 117.49894 * 138.49288 * 8 6 5 14 14 C 1.52997 * 117.49951 * 69.83242 * 8 6 5 15 15 C 1.47200 * 118.55702 * 53.53661 * 5 4 2 16 16 C 1.53199 * 108.85423 * 306.48239 * 15 5 4 17 17 C 1.53033 * 109.52819 * 239.91412 * 2 1 3 18 18 H 1.09001 * 109.46106 * 181.38000 * 17 2 1 19 19 C 1.53008 * 109.45975 * 61.40448 * 17 2 1 20 20 N 1.46498 * 109.47025 * 175.00112 * 19 17 2 21 21 C 1.36936 * 119.99737 * 180.02562 * 20 19 17 22 22 H 1.07996 * 120.00173 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99962 * 180.02562 * 21 20 19 24 24 N 1.31622 * 120.00098 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00222 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46819 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46903 * 119.99506 * 25 23 21 28 28 H 1.48494 * 109.47497 * 240.00027 * 25 23 21 29 29 H 1.08999 * 109.47428 * 299.93714 * 1 2 3 30 30 H 1.09003 * 109.47131 * 59.94217 * 1 2 3 31 31 H 1.09002 * 109.46875 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.58913 * 185.13454 * 4 2 1 33 33 H 1.08994 * 109.59008 * 305.42256 * 4 2 1 34 34 H 1.08995 * 109.47570 * 55.50658 * 10 9 8 35 35 H 1.08998 * 109.46907 * 175.51127 * 10 9 8 36 36 H 1.09004 * 109.47222 * 295.50670 * 10 9 8 37 37 H 1.08996 * 117.50048 * 359.97438 * 13 8 6 38 38 H 1.09007 * 117.49900 * 145.01803 * 13 8 6 39 39 H 1.08994 * 117.50105 * 214.97767 * 14 8 6 40 40 H 1.09003 * 117.50040 * 0.02562 * 14 8 6 41 41 H 1.08994 * 109.53608 * 186.67775 * 15 5 4 42 42 H 1.09001 * 109.56191 * 66.29656 * 15 5 4 43 43 H 1.09007 * 109.49231 * 294.69893 * 16 15 5 44 44 H 1.08996 * 109.49508 * 174.60676 * 16 15 5 45 45 H 1.09004 * 109.46799 * 295.00308 * 19 17 2 46 46 H 1.08999 * 109.47115 * 54.99856 * 19 17 2 47 47 H 0.96996 * 120.00176 * 359.97438 * 20 19 17 48 48 H 0.97002 * 120.00159 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7233 1.2499 5 7 1.6520 -2.1381 1.1735 6 6 0.9745 -2.7194 2.1832 7 8 0.7684 -2.1046 3.2082 8 6 0.4732 -4.1332 2.0386 9 6 -0.7653 -4.3072 1.1573 10 6 -1.8973 -3.4257 1.6887 11 9 -0.4598 -3.9329 -0.1556 12 9 -1.1681 -5.6468 1.1785 13 6 0.6164 -5.0605 3.2471 14 6 1.5147 -5.2538 2.0228 15 6 2.0154 -2.9038 -0.0300 16 6 1.5044 -2.1559 -1.2656 17 6 2.0415 -0.7230 -1.2480 18 1 3.1313 -0.7438 -1.2346 19 6 1.5612 0.0165 -2.4984 20 7 2.1479 -0.6044 -3.6885 21 6 1.8596 -0.1086 -4.9320 22 1 1.1995 0.7398 -5.0354 23 6 2.4151 -0.6972 -6.0598 24 7 3.2193 -1.7316 -5.9339 25 14 2.0214 -0.0214 -7.7561 26 1 1.1002 1.1362 -7.6262 27 1 3.2765 0.4174 -8.4177 28 1 1.3751 -1.0797 -8.5730 29 1 -0.3634 0.5128 0.8905 30 1 -0.3633 0.5147 -0.8895 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1273 -0.6453 1.2987 33 1 1.6021 -0.2710 2.1391 34 1 -1.5562 -2.3922 1.7473 35 1 -2.7528 -3.4884 1.0162 36 1 -2.1896 -3.7687 2.6812 37 1 1.0735 -4.6482 4.1466 38 1 -0.1717 -5.7949 3.4141 39 1 1.3174 -6.1153 1.3850 40 1 2.5625 -4.9686 2.1175 41 1 1.5572 -3.8918 0.0144 42 1 3.0994 -3.0035 -0.0857 43 1 0.4146 -2.1362 -1.2540 44 1 1.8500 -2.6630 -2.1665 45 1 0.4742 -0.0389 -2.5581 46 1 1.8693 1.0606 -2.4439 47 1 2.7411 -1.3662 -3.5957 48 1 3.6078 -2.1426 -6.7219 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185159561.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:03 Heat of formation + Delta-G solvation = -117.525783 kcal Electronic energy + Delta-G solvation = -31048.972203 eV Core-core repulsion = 26774.907696 eV Total energy + Delta-G solvation = -4274.064507 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.15164 -48.14205 -41.70954 -39.65619 -37.63275 -36.55907 -34.76735 -33.18820 -32.38355 -31.94382 -28.51306 -28.24578 -26.08309 -25.35371 -24.32897 -23.68632 -23.47444 -22.54478 -20.45422 -19.74862 -19.22530 -18.63399 -18.45414 -17.52958 -17.26836 -16.81516 -16.70703 -16.14460 -15.84543 -15.61869 -15.43069 -15.32608 -15.16776 -14.87737 -14.49227 -14.46594 -14.33109 -14.05735 -13.84446 -13.74618 -13.47140 -13.44059 -13.26286 -12.97177 -12.85678 -12.81951 -12.64244 -12.56728 -12.43808 -12.14369 -12.02236 -11.90747 -11.72990 -11.56281 -11.44104 -11.34501 -11.21762 -10.91868 -10.79340 -9.68027 -8.95318 -7.93594 -5.21059 1.26829 1.47766 1.47975 1.57989 1.80913 2.33275 2.56975 2.58798 3.00816 3.11257 3.33486 3.40149 3.47986 3.71625 3.76354 3.83842 3.85681 3.86868 4.07577 4.23678 4.31781 4.39959 4.43383 4.47411 4.52644 4.58320 4.61959 4.65914 4.72724 4.74804 4.82225 4.83733 4.87665 4.90159 4.98506 5.04003 5.09198 5.19230 5.20537 5.24822 5.33046 5.49282 5.54154 5.63023 6.28419 6.29697 6.98245 7.36093 8.13082 8.36776 9.30056 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.017231 B = 0.003416 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.592298 B = 8195.776662 C = 8811.080534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.094 0.906 4 C 0.119 3.881 5 N -0.591 5.591 6 C 0.562 3.438 7 O -0.561 6.561 8 C -0.234 4.234 9 C 0.329 3.671 10 C -0.188 4.188 11 F -0.197 7.197 12 F -0.193 7.193 13 C -0.111 4.111 14 C -0.141 4.141 15 C 0.110 3.890 16 C -0.117 4.117 17 C -0.079 4.079 18 H 0.068 0.932 19 C 0.160 3.840 20 N -0.742 5.742 21 C -0.243 4.243 22 H 0.071 0.929 23 C -0.073 4.073 24 N -0.967 5.967 25 Si 0.969 3.031 26 H -0.268 1.268 27 H -0.293 1.293 28 H -0.293 1.293 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.018 0.982 46 H 0.016 0.984 47 H 0.375 0.625 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.143 -6.156 21.480 23.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 H 0.113 0.887 4 C -0.003 4.003 5 N -0.322 5.322 6 C 0.349 3.651 7 O -0.440 6.440 8 C -0.238 4.238 9 C 0.293 3.707 10 C -0.246 4.246 11 F -0.178 7.178 12 F -0.174 7.174 13 C -0.148 4.148 14 C -0.178 4.178 15 C -0.013 4.013 16 C -0.155 4.155 17 C -0.098 4.098 18 H 0.086 0.914 19 C 0.033 3.967 20 N -0.385 5.385 21 C -0.375 4.375 22 H 0.089 0.911 23 C -0.265 4.265 24 N -0.618 5.618 25 Si 0.799 3.201 26 H -0.193 1.193 27 H -0.220 1.220 28 H -0.221 1.221 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.145 0.855 39 H 0.138 0.862 40 H 0.134 0.866 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.036 0.964 46 H 0.034 0.966 47 H 0.208 0.792 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.341 -5.705 21.866 23.470 hybrid contribution 0.137 0.021 -1.670 1.675 sum -6.204 -5.684 20.196 21.879 Atomic orbital electron populations 1.21836 0.94982 1.01505 1.01625 1.21413 0.96523 0.99881 0.93126 0.88738 1.21739 1.00462 0.79639 0.98491 1.48117 1.54528 1.11755 1.17830 1.19129 0.77154 0.86164 0.82670 1.90677 1.58965 1.65054 1.29286 1.22286 1.00800 0.92818 1.07918 1.20173 0.93709 0.78378 0.78489 1.22732 0.97143 0.99975 1.04707 1.93043 1.93963 1.91153 1.39632 1.93002 1.91536 1.36405 1.96498 1.23199 1.02397 0.97639 0.91565 1.23348 0.96392 0.96645 1.01422 1.22022 1.00694 0.95713 0.82833 1.21805 1.01275 0.95324 0.97107 1.21201 0.99919 0.94960 0.93686 0.91394 1.20834 0.95373 0.94671 0.85799 1.42569 1.56803 1.37521 1.01607 1.19641 1.22195 1.10440 0.85258 0.91055 1.25489 1.00649 0.99048 1.01313 1.69807 1.37148 1.25813 1.29030 0.85134 0.77134 0.77551 0.80319 1.19280 1.21995 1.22067 0.92069 0.92815 0.93363 0.90006 0.89125 0.90396 0.88893 0.87492 0.86841 0.85536 0.86159 0.86561 0.88391 0.90285 0.91587 0.92433 0.96440 0.96596 0.79236 0.94041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 8.38 71.98 0.60 -2.92 16 2 C -0.09 -2.18 2.72 -10.72 -0.03 -2.21 16 3 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 4 C 0.12 2.63 5.80 86.36 0.50 3.13 16 5 N -0.59 -13.63 2.43 -818.19 -1.99 -15.62 16 6 C 0.56 13.28 5.76 87.66 0.50 13.79 16 7 O -0.56 -16.00 16.38 -3.05 -0.05 -16.05 16 8 C -0.23 -4.50 0.83 -52.93 -0.04 -4.54 16 9 C 0.33 6.78 2.09 30.59 0.06 6.84 16 10 C -0.19 -3.37 9.24 71.98 0.66 -2.70 16 11 F -0.20 -5.02 12.56 44.97 0.57 -4.45 16 12 F -0.19 -3.94 15.64 44.97 0.70 -3.23 16 13 C -0.11 -1.60 9.54 30.62 0.29 -1.31 16 14 C -0.14 -2.11 8.28 30.62 0.25 -1.85 16 15 C 0.11 2.61 5.31 86.31 0.46 3.07 16 16 C -0.12 -3.53 4.54 30.67 0.14 -3.39 16 17 C -0.08 -2.40 1.96 -10.77 -0.02 -2.42 16 18 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 19 C 0.16 6.29 5.19 86.38 0.45 6.74 16 20 N -0.74 -37.43 5.32 -343.44 -1.83 -39.25 16 21 C -0.24 -13.66 9.99 84.03 0.84 -12.82 16 22 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 23 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 24 N -0.97 -58.83 13.06 21.65 0.28 -58.55 16 25 Si 0.97 46.29 29.55 68.60 2.03 48.32 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 27 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 28 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.42 6.59 -2.39 -0.02 1.41 16 31 H 0.05 1.27 5.98 -2.39 -0.01 1.26 16 32 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.09 2.07 7.04 -2.39 -0.02 2.05 16 34 H 0.08 1.59 7.30 -2.39 -0.02 1.57 16 35 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.13 1.46 7.67 -2.38 -0.02 1.44 16 39 H 0.12 1.65 7.89 -2.39 -0.02 1.64 16 40 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.10 2.23 3.83 -2.39 -0.01 2.22 16 42 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.07 2.10 5.07 -2.38 -0.01 2.09 16 44 H 0.06 2.08 7.15 -2.39 -0.02 2.06 16 45 H 0.02 0.72 6.74 -2.39 -0.02 0.70 16 46 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.38 19.91 6.84 -92.71 -0.63 19.28 16 48 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -67.02 371.04 5.20 -61.82 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 0.34 Total: 31.34 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 5.14 Total: -4.31 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -3.53 Total: -113.43 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.05 Total: -16.05 kcal Atomic # 9 Polarization: -8.96 SS G_CDS: 1.27 Total: -7.69 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -67.02 5.20 -61.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185159561.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.704 kcal (2) G-P(sol) polarization free energy of solvation -67.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds