Wall clock time and date at job start Tue Mar 31 2020 17:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.51840 * 2 1 4 4 C 1.53623 * 109.63153 * 239.91978 * 2 1 3 5 5 N 1.46925 * 108.54272 * 294.86048 * 4 2 1 6 6 C 1.34783 * 120.62980 * 126.37036 * 5 4 2 7 7 O 1.21286 * 120.00022 * 356.02578 * 6 5 4 8 8 C 1.50698 * 120.00101 * 176.02483 * 6 5 4 9 9 C 1.53002 * 115.55010 * 81.83378 * 8 6 5 10 10 C 1.52999 * 109.47163 * 61.26785 * 9 8 6 11 11 F 1.39897 * 109.47258 * 301.26977 * 9 8 6 12 12 F 1.39901 * 109.46980 * 181.26831 * 9 8 6 13 13 C 1.52997 * 117.49956 * 227.50785 * 8 6 5 14 14 C 1.52999 * 117.50063 * 296.16854 * 8 6 5 15 15 C 1.46920 * 118.74178 * 306.09758 * 5 4 2 16 16 C 1.53191 * 108.77556 * 53.85501 * 15 5 4 17 17 C 1.53038 * 109.50029 * 120.08218 * 2 1 3 18 18 H 1.08997 * 109.45858 * 178.60541 * 17 2 1 19 19 C 1.53002 * 109.45792 * 298.56756 * 17 2 1 20 20 N 1.46500 * 109.46820 * 185.06640 * 19 17 2 21 21 C 1.36933 * 120.00164 * 179.97438 * 20 19 17 22 22 H 1.08007 * 119.99635 * 0.02562 * 21 20 19 23 23 C 1.38809 * 120.00373 * 179.97438 * 21 20 19 24 24 N 1.31623 * 119.99710 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00220 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46751 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46918 * 120.00387 * 25 23 21 28 28 H 1.48491 * 109.47387 * 240.00536 * 25 23 21 29 29 H 1.09001 * 109.47115 * 299.91409 * 1 2 3 30 30 H 1.08997 * 109.47442 * 59.91896 * 1 2 3 31 31 H 1.09001 * 109.46930 * 179.91829 * 1 2 3 32 32 H 1.08994 * 109.73889 * 175.12546 * 4 2 1 33 33 H 1.09001 * 109.66683 * 54.55317 * 4 2 1 34 34 H 1.09000 * 109.47067 * 294.73502 * 10 9 8 35 35 H 1.09008 * 109.46872 * 54.73101 * 10 9 8 36 36 H 1.08994 * 109.47721 * 174.73142 * 10 9 8 37 37 H 1.09003 * 117.49774 * 214.99761 * 13 8 6 38 38 H 1.08999 * 117.49702 * 0.02562 * 13 8 6 39 39 H 1.09006 * 117.49819 * 359.97354 * 14 8 6 40 40 H 1.09003 * 117.50508 * 144.99417 * 14 8 6 41 41 H 1.09003 * 109.59379 * 173.64888 * 15 5 4 42 42 H 1.09000 * 109.58778 * 293.93024 * 15 5 4 43 43 H 1.09000 * 109.49546 * 65.32033 * 16 15 5 44 44 H 1.09004 * 109.49994 * 185.37982 * 16 15 5 45 45 H 1.08995 * 109.47000 * 305.06780 * 19 17 2 46 46 H 1.08999 * 109.47270 * 65.07154 * 19 17 2 47 47 H 0.96998 * 120.00023 * 0.02562 * 20 19 17 48 48 H 0.96999 * 119.99435 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0462 -0.7252 -1.2521 5 7 1.6516 -2.1381 -1.1697 6 6 0.9747 -2.7220 -2.1784 7 8 0.6228 -2.0631 -3.1339 8 6 0.6553 -4.1936 -2.1191 9 6 -0.5749 -4.5689 -1.2904 10 6 -1.8165 -3.9083 -1.8927 11 9 -0.4033 -4.1265 0.0256 12 9 -0.7359 -5.9586 -1.2980 13 6 0.9504 -5.0313 -3.3648 14 6 1.8312 -5.1724 -2.1209 15 6 2.0140 -2.9040 0.0306 16 6 1.5031 -2.1558 1.2659 17 6 2.0409 -0.7231 1.2483 18 1 3.1306 -0.7444 1.2352 19 6 1.5607 0.0170 2.4984 20 7 2.1481 -0.6030 3.6887 21 6 1.8603 -0.1066 4.9320 22 1 1.1998 0.7418 5.0351 23 6 2.4164 -0.6944 6.0598 24 7 3.2208 -1.7285 5.9342 25 14 2.0243 -0.0167 7.7559 26 1 1.1025 1.1402 7.6256 27 1 1.3782 -1.0742 8.5742 28 1 3.2798 0.4221 8.4161 29 1 -0.3633 0.5125 0.8908 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3633 -1.0277 -0.0015 32 1 3.1326 -0.6514 -1.2986 33 1 1.6087 -0.2751 -2.1432 34 1 -1.7321 -2.8254 -1.8018 35 1 -1.8977 -4.1793 -2.9455 36 1 -2.7042 -4.2495 -1.3602 37 1 0.2681 -5.8499 -3.5941 38 1 1.3760 -4.5181 -4.2272 39 1 2.8360 -4.7520 -2.1655 40 1 1.7285 -6.0837 -1.5318 41 1 1.5555 -3.8919 -0.0139 42 1 3.0978 -3.0064 0.0852 43 1 0.4134 -2.1355 1.2540 44 1 1.8477 -2.6632 2.1670 45 1 1.8686 1.0611 2.4431 46 1 0.4738 -0.0387 2.5586 47 1 2.7415 -1.3647 3.5960 48 1 3.6091 -2.1395 6.7224 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185159562.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:07 Heat of formation + Delta-G solvation = -99.946393 kcal Electronic energy + Delta-G solvation = -30929.307485 eV Core-core repulsion = 26656.005277 eV Total energy + Delta-G solvation = -4273.302208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.29209 -47.26739 -40.70988 -38.53909 -36.77770 -34.95632 -33.30549 -31.72460 -31.56047 -30.29944 -27.25516 -26.96923 -25.08964 -23.78858 -23.17271 -22.68850 -22.57758 -21.16820 -19.48269 -18.62287 -17.90073 -17.61885 -16.99881 -16.64090 -16.31403 -15.84593 -15.23325 -14.94583 -14.71599 -14.40605 -14.14632 -14.00347 -13.82308 -13.68999 -13.52249 -13.41303 -13.15614 -12.92805 -12.76429 -12.58174 -12.41948 -12.30331 -12.18922 -12.02047 -11.92211 -11.56229 -11.36815 -11.03461 -10.98935 -10.91120 -10.76977 -10.63842 -10.32620 -10.22216 -10.13714 -9.95299 -9.76975 -9.62178 -8.84577 -8.62476 -6.88342 -5.75110 -3.02731 2.23582 2.71197 3.06940 3.38592 3.44180 3.50062 3.52062 3.80468 3.95633 4.16482 4.20975 4.56762 4.60203 4.63128 4.85207 4.94948 5.01212 5.10510 5.19594 5.22796 5.25160 5.29099 5.38958 5.44362 5.56401 5.56667 5.61076 5.63375 5.65574 5.70974 5.79476 5.88106 5.91055 6.10545 6.12403 6.21666 6.32881 6.39934 6.47992 6.55224 6.70777 6.84367 6.97862 7.28890 7.72470 7.96997 8.44419 9.55618 10.14349 10.48926 11.48013 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.017148 B = 0.003362 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.415556 B = 8326.147843 C = 8981.740335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.081 0.919 4 C 0.116 3.884 5 N -0.591 5.591 6 C 0.558 3.442 7 O -0.536 6.536 8 C -0.217 4.217 9 C 0.332 3.668 10 C -0.189 4.189 11 F -0.182 7.182 12 F -0.193 7.193 13 C -0.124 4.124 14 C -0.148 4.148 15 C 0.098 3.902 16 C -0.123 4.123 17 C -0.089 4.089 18 H 0.070 0.930 19 C 0.159 3.841 20 N -0.732 5.732 21 C -0.236 4.236 22 H 0.069 0.931 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.092 0.908 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.017 0.983 46 H 0.021 0.979 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.140 -6.554 -20.786 22.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.100 0.900 4 C -0.006 4.006 5 N -0.322 5.322 6 C 0.344 3.656 7 O -0.413 6.413 8 C -0.221 4.221 9 C 0.296 3.704 10 C -0.246 4.246 11 F -0.163 7.163 12 F -0.174 7.174 13 C -0.162 4.162 14 C -0.185 4.185 15 C -0.024 4.024 16 C -0.161 4.161 17 C -0.108 4.108 18 H 0.089 0.911 19 C 0.031 3.969 20 N -0.376 5.376 21 C -0.367 4.367 22 H 0.087 0.913 23 C -0.210 4.210 24 N -0.583 5.583 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.132 0.868 41 H 0.110 0.890 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.105 0.895 45 H 0.034 0.966 46 H 0.039 0.961 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.396 -6.099 -21.109 22.625 hybrid contribution 0.095 -0.012 1.339 1.343 sum -5.301 -6.111 -19.770 21.361 Atomic orbital electron populations 1.21860 0.94917 1.02014 1.01436 1.21534 0.96647 0.99395 0.94105 0.90029 1.21840 0.99415 0.79935 0.99431 1.48034 1.54664 1.11722 1.17808 1.18888 0.77886 0.86309 0.82504 1.90689 1.53013 1.64067 1.33516 1.22332 0.99498 0.93790 1.06454 1.20023 0.95236 0.75982 0.79187 1.22710 0.95475 1.03172 1.03270 1.93058 1.96055 1.88956 1.38250 1.93010 1.96423 1.31419 1.96573 1.23087 1.01926 0.99780 0.91368 1.23254 0.94687 0.99455 1.01117 1.22116 1.00231 0.95987 0.84091 1.21920 1.01699 0.95577 0.96928 1.21321 1.00178 0.94872 0.94449 0.91125 1.20704 0.95909 0.94565 0.85682 1.42384 1.56736 1.37617 1.00861 1.19275 1.22865 1.10740 0.83867 0.91264 1.24713 1.00159 0.98396 0.97757 1.69665 1.35805 1.24450 1.28377 0.86140 0.77390 0.78004 0.84824 1.20610 1.21908 1.21926 0.91883 0.93391 0.92555 0.91299 0.89134 0.89139 0.88989 0.89661 0.86995 0.87051 0.87218 0.86788 0.89006 0.91460 0.91012 0.89523 0.96567 0.96096 0.78307 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.39 37.16 0.31 -1.60 16 2 C -0.10 -1.26 2.72 -90.27 -0.25 -1.51 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.12 1.39 5.87 -3.49 -0.02 1.37 16 5 N -0.59 -7.25 2.40 -172.51 -0.41 -7.66 16 6 C 0.56 7.03 6.08 -10.98 -0.07 6.96 16 7 O -0.54 -8.03 16.43 5.55 0.09 -7.93 16 8 C -0.22 -2.24 0.75 -155.66 -0.12 -2.36 16 9 C 0.33 3.60 2.06 -26.73 -0.05 3.55 16 10 C -0.19 -1.77 9.13 37.16 0.34 -1.43 16 11 F -0.18 -2.37 13.21 2.25 0.03 -2.34 16 12 F -0.19 -2.10 15.63 2.25 0.04 -2.06 16 13 C -0.12 -1.01 9.62 -26.70 -0.26 -1.27 16 14 C -0.15 -1.24 8.32 -26.69 -0.22 -1.47 16 15 C 0.10 1.22 5.19 -3.71 -0.02 1.20 16 16 C -0.12 -1.87 4.66 -26.61 -0.12 -2.00 16 17 C -0.09 -1.39 1.96 -90.58 -0.18 -1.57 16 18 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 19 C 0.16 3.14 5.18 -4.04 -0.02 3.12 16 20 N -0.73 -18.25 5.32 -59.91 -0.32 -18.57 16 21 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 22 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -28.06 13.06 55.49 0.72 -27.33 16 25 Si 0.90 22.47 29.55 -169.99 -5.02 17.45 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H 0.06 0.87 6.58 -51.93 -0.34 0.53 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.79 5.97 -51.93 -0.31 0.48 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.09 1.13 7.00 -51.93 -0.36 0.76 16 34 H 0.09 0.94 7.77 -51.93 -0.40 0.54 16 35 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.11 0.76 7.82 -51.93 -0.41 0.36 16 38 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.11 0.90 7.74 -51.93 -0.40 0.49 16 41 H 0.09 1.11 3.76 -51.93 -0.20 0.91 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.07 1.15 5.68 -51.93 -0.30 0.85 16 44 H 0.09 1.53 7.15 -51.93 -0.37 1.16 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.02 0.43 6.74 -51.93 -0.35 0.08 16 47 H 0.38 9.95 6.85 -40.82 -0.28 9.67 16 48 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 372.98 15.07 5.62 5.62 Total: -1.00 -31.64 372.98 -7.67 -39.30 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -7.49 Total: 7.80 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -0.92 Total: -4.27 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.01 Total: -53.57 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.09 Total: -7.93 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.06 Total: -4.41 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.64 -7.67 -39.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185159562.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.643 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds