Wall clock time and date at job start Tue Mar 31 2020 17:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.51840 * 2 1 4 4 C 1.53623 * 109.63153 * 239.91978 * 2 1 3 5 5 N 1.46925 * 108.54272 * 294.86048 * 4 2 1 6 6 C 1.34783 * 120.62980 * 126.37036 * 5 4 2 7 7 O 1.21286 * 120.00022 * 356.02578 * 6 5 4 8 8 C 1.50698 * 120.00101 * 176.02483 * 6 5 4 9 9 C 1.53002 * 115.55010 * 81.83378 * 8 6 5 10 10 C 1.52999 * 109.47163 * 61.26785 * 9 8 6 11 11 F 1.39897 * 109.47258 * 301.26977 * 9 8 6 12 12 F 1.39901 * 109.46980 * 181.26831 * 9 8 6 13 13 C 1.52997 * 117.49956 * 227.50785 * 8 6 5 14 14 C 1.52999 * 117.50063 * 296.16854 * 8 6 5 15 15 C 1.46920 * 118.74178 * 306.09758 * 5 4 2 16 16 C 1.53191 * 108.77556 * 53.85501 * 15 5 4 17 17 C 1.53038 * 109.50029 * 120.08218 * 2 1 3 18 18 H 1.08997 * 109.45858 * 178.60541 * 17 2 1 19 19 C 1.53002 * 109.45792 * 298.56756 * 17 2 1 20 20 N 1.46500 * 109.46820 * 185.06640 * 19 17 2 21 21 C 1.36933 * 120.00164 * 179.97438 * 20 19 17 22 22 H 1.08007 * 119.99635 * 0.02562 * 21 20 19 23 23 C 1.38809 * 120.00373 * 179.97438 * 21 20 19 24 24 N 1.31623 * 119.99710 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00220 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46751 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46918 * 120.00387 * 25 23 21 28 28 H 1.48491 * 109.47387 * 240.00536 * 25 23 21 29 29 H 1.09001 * 109.47115 * 299.91409 * 1 2 3 30 30 H 1.08997 * 109.47442 * 59.91896 * 1 2 3 31 31 H 1.09001 * 109.46930 * 179.91829 * 1 2 3 32 32 H 1.08994 * 109.73889 * 175.12546 * 4 2 1 33 33 H 1.09001 * 109.66683 * 54.55317 * 4 2 1 34 34 H 1.09000 * 109.47067 * 294.73502 * 10 9 8 35 35 H 1.09008 * 109.46872 * 54.73101 * 10 9 8 36 36 H 1.08994 * 109.47721 * 174.73142 * 10 9 8 37 37 H 1.09003 * 117.49774 * 214.99761 * 13 8 6 38 38 H 1.08999 * 117.49702 * 0.02562 * 13 8 6 39 39 H 1.09006 * 117.49819 * 359.97354 * 14 8 6 40 40 H 1.09003 * 117.50508 * 144.99417 * 14 8 6 41 41 H 1.09003 * 109.59379 * 173.64888 * 15 5 4 42 42 H 1.09000 * 109.58778 * 293.93024 * 15 5 4 43 43 H 1.09000 * 109.49546 * 65.32033 * 16 15 5 44 44 H 1.09004 * 109.49994 * 185.37982 * 16 15 5 45 45 H 1.08995 * 109.47000 * 305.06780 * 19 17 2 46 46 H 1.08999 * 109.47270 * 65.07154 * 19 17 2 47 47 H 0.96998 * 120.00023 * 0.02562 * 20 19 17 48 48 H 0.96999 * 119.99435 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0462 -0.7252 -1.2521 5 7 1.6516 -2.1381 -1.1697 6 6 0.9747 -2.7220 -2.1784 7 8 0.6228 -2.0631 -3.1339 8 6 0.6553 -4.1936 -2.1191 9 6 -0.5749 -4.5689 -1.2904 10 6 -1.8165 -3.9083 -1.8927 11 9 -0.4033 -4.1265 0.0256 12 9 -0.7359 -5.9586 -1.2980 13 6 0.9504 -5.0313 -3.3648 14 6 1.8312 -5.1724 -2.1209 15 6 2.0140 -2.9040 0.0306 16 6 1.5031 -2.1558 1.2659 17 6 2.0409 -0.7231 1.2483 18 1 3.1306 -0.7444 1.2352 19 6 1.5607 0.0170 2.4984 20 7 2.1481 -0.6030 3.6887 21 6 1.8603 -0.1066 4.9320 22 1 1.1998 0.7418 5.0351 23 6 2.4164 -0.6944 6.0598 24 7 3.2208 -1.7285 5.9342 25 14 2.0243 -0.0167 7.7559 26 1 1.1025 1.1402 7.6256 27 1 1.3782 -1.0742 8.5742 28 1 3.2798 0.4221 8.4161 29 1 -0.3633 0.5125 0.8908 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3633 -1.0277 -0.0015 32 1 3.1326 -0.6514 -1.2986 33 1 1.6087 -0.2751 -2.1432 34 1 -1.7321 -2.8254 -1.8018 35 1 -1.8977 -4.1793 -2.9455 36 1 -2.7042 -4.2495 -1.3602 37 1 0.2681 -5.8499 -3.5941 38 1 1.3760 -4.5181 -4.2272 39 1 2.8360 -4.7520 -2.1655 40 1 1.7285 -6.0837 -1.5318 41 1 1.5555 -3.8919 -0.0139 42 1 3.0978 -3.0064 0.0852 43 1 0.4134 -2.1355 1.2540 44 1 1.8477 -2.6632 2.1670 45 1 1.8686 1.0611 2.4431 46 1 0.4738 -0.0387 2.5586 47 1 2.7415 -1.3647 3.5960 48 1 3.6091 -2.1395 6.7224 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185159562.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:06 Heat of formation + Delta-G solvation = -117.505670 kcal Electronic energy + Delta-G solvation = -30930.068912 eV Core-core repulsion = 26656.005277 eV Total energy + Delta-G solvation = -4274.063635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.16816 -48.15804 -41.70708 -39.64056 -37.64984 -36.56570 -34.77555 -33.17567 -32.32709 -31.95713 -28.51257 -28.26567 -26.09188 -25.36941 -24.31863 -23.69413 -23.45479 -22.53198 -20.47964 -19.73821 -19.23258 -18.65209 -18.43295 -17.57264 -17.25675 -16.81602 -16.73326 -16.13527 -15.85946 -15.60648 -15.43964 -15.33440 -15.08372 -14.86934 -14.52695 -14.45959 -14.34791 -14.07873 -13.85604 -13.72702 -13.49033 -13.47802 -13.25733 -12.97523 -12.86688 -12.81801 -12.65696 -12.55445 -12.44938 -12.14698 -12.03114 -11.91063 -11.72139 -11.56388 -11.43852 -11.34522 -11.22353 -10.92077 -10.78690 -9.67305 -8.95756 -7.93913 -5.21419 1.28507 1.47552 1.47862 1.57869 1.80955 2.33619 2.56737 2.58407 3.00753 3.11842 3.34841 3.39816 3.48320 3.71523 3.75495 3.82900 3.85110 3.86871 4.07236 4.23440 4.31042 4.40442 4.43152 4.46597 4.54252 4.58857 4.62230 4.65307 4.72800 4.75082 4.81776 4.83857 4.88918 4.90097 4.97831 5.04254 5.08394 5.18672 5.19319 5.23845 5.32260 5.49008 5.53662 5.61891 6.28703 6.29603 6.99237 7.35793 8.12571 8.36455 9.29737 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.017148 B = 0.003362 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.415556 B = 8326.147843 C = 8981.740335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 H 0.094 0.906 4 C 0.118 3.882 5 N -0.590 5.590 6 C 0.560 3.440 7 O -0.560 6.560 8 C -0.234 4.234 9 C 0.328 3.672 10 C -0.187 4.187 11 F -0.199 7.199 12 F -0.193 7.193 13 C -0.110 4.110 14 C -0.141 4.141 15 C 0.108 3.892 16 C -0.116 4.116 17 C -0.078 4.078 18 H 0.069 0.931 19 C 0.159 3.841 20 N -0.742 5.742 21 C -0.244 4.244 22 H 0.071 0.929 23 C -0.073 4.073 24 N -0.967 5.967 25 Si 0.969 3.031 26 H -0.268 1.268 27 H -0.293 1.293 28 H -0.292 1.292 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.017 0.983 46 H 0.017 0.983 47 H 0.375 0.625 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.246 -6.608 -22.051 23.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.112 0.888 4 C -0.004 4.004 5 N -0.321 5.321 6 C 0.347 3.653 7 O -0.439 6.439 8 C -0.238 4.238 9 C 0.292 3.708 10 C -0.244 4.244 11 F -0.180 7.180 12 F -0.174 7.174 13 C -0.147 4.147 14 C -0.178 4.178 15 C -0.014 4.014 16 C -0.154 4.154 17 C -0.097 4.097 18 H 0.088 0.912 19 C 0.033 3.967 20 N -0.385 5.385 21 C -0.376 4.376 22 H 0.089 0.911 23 C -0.265 4.265 24 N -0.618 5.618 25 Si 0.799 3.201 26 H -0.193 1.193 27 H -0.221 1.221 28 H -0.219 1.219 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.125 0.875 36 H 0.112 0.888 37 H 0.145 0.855 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.116 0.884 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.035 0.965 46 H 0.035 0.965 47 H 0.208 0.792 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.521 -6.132 -22.397 23.869 hybrid contribution 0.085 0.024 1.692 1.695 sum -5.437 -6.109 -20.705 22.261 Atomic orbital electron populations 1.21799 0.95090 1.01331 1.01503 1.21484 0.96374 0.99897 0.93180 0.88767 1.21852 1.00351 0.79659 0.98528 1.48051 1.54613 1.11853 1.17626 1.19172 0.77064 0.87105 0.81927 1.90673 1.53888 1.64944 1.34433 1.22267 1.00376 0.92733 1.08451 1.20212 0.96143 0.76007 0.78473 1.22715 0.95276 1.02173 1.04242 1.93025 1.96189 1.89177 1.39632 1.93005 1.96469 1.31376 1.96524 1.23204 1.01536 0.99201 0.90762 1.23363 0.94396 0.98864 1.01192 1.21985 1.00834 0.95757 0.82838 1.21768 1.00942 0.95462 0.97206 1.21198 0.99982 0.94862 0.93679 0.91240 1.20833 0.95329 0.94716 0.85823 1.42567 1.56772 1.37550 1.01607 1.19641 1.22198 1.10466 0.85269 0.91079 1.25492 1.00632 0.99049 1.01320 1.69809 1.37120 1.25820 1.29029 0.85129 0.77141 0.77549 0.80295 1.19300 1.22069 1.21950 0.92882 0.92181 0.93621 0.89699 0.89073 0.90430 0.87533 0.88757 0.85472 0.86811 0.86581 0.86148 0.88399 0.90203 0.92078 0.92347 0.96545 0.96536 0.79222 0.94030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 8.39 71.98 0.60 -2.99 16 2 C -0.09 -2.21 2.72 -10.57 -0.03 -2.24 16 3 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 4 C 0.12 2.62 5.87 86.51 0.51 3.13 16 5 N -0.59 -13.68 2.40 -818.08 -1.96 -15.64 16 6 C 0.56 13.30 6.08 87.66 0.53 13.84 16 7 O -0.56 -16.03 16.43 -3.05 -0.05 -16.08 16 8 C -0.23 -4.46 0.75 -52.93 -0.04 -4.50 16 9 C 0.33 6.74 2.06 30.59 0.06 6.81 16 10 C -0.19 -3.30 9.13 71.98 0.66 -2.64 16 11 F -0.20 -5.13 13.21 44.97 0.59 -4.54 16 12 F -0.19 -3.89 15.63 44.97 0.70 -3.18 16 13 C -0.11 -1.53 9.62 30.62 0.29 -1.23 16 14 C -0.14 -2.07 8.32 30.62 0.25 -1.81 16 15 C 0.11 2.59 5.19 86.36 0.45 3.04 16 16 C -0.12 -3.53 4.66 30.67 0.14 -3.39 16 17 C -0.08 -2.40 1.96 -10.77 -0.02 -2.42 16 18 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 19 C 0.16 6.32 5.18 86.38 0.45 6.77 16 20 N -0.74 -37.54 5.32 -343.45 -1.83 -39.37 16 21 C -0.24 -13.72 9.99 84.03 0.84 -12.88 16 22 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 23 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 24 N -0.97 -58.88 13.06 21.65 0.28 -58.59 16 25 Si 0.97 46.37 29.55 68.60 2.03 48.39 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 27 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 28 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 29 H 0.05 1.45 6.58 -2.39 -0.02 1.43 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.04 1.26 5.97 -2.39 -0.01 1.25 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.09 2.09 7.00 -2.39 -0.02 2.07 16 34 H 0.08 1.58 7.77 -2.39 -0.02 1.56 16 35 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.13 1.38 7.82 -2.39 -0.02 1.36 16 38 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.12 1.63 7.74 -2.39 -0.02 1.61 16 41 H 0.10 2.27 3.76 -2.39 -0.01 2.26 16 42 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16 43 H 0.06 1.99 5.68 -2.39 -0.01 1.98 16 44 H 0.06 2.12 7.15 -2.38 -0.02 2.11 16 45 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.02 0.68 6.74 -2.39 -0.02 0.67 16 47 H 0.38 19.95 6.85 -92.71 -0.63 19.32 16 48 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -67.33 372.98 5.28 -62.05 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: 0.34 Total: 31.21 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 5.17 Total: -4.25 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -3.51 Total: -113.61 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.05 Total: -16.08 kcal Atomic # 9 Polarization: -9.02 SS G_CDS: 1.30 Total: -7.72 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -67.33 5.28 -62.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185159562.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.457 kcal (2) G-P(sol) polarization free energy of solvation -67.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds