Wall clock time and date at job start Tue Mar 31 2020 17:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.49701 * 2 1 4 4 C 1.53199 * 109.49452 * 239.93194 * 2 1 3 5 5 N 1.46931 * 108.77331 * 185.41286 * 4 2 1 6 6 C 1.34778 * 120.63087 * 233.58632 * 5 4 2 7 7 O 1.21280 * 119.99506 * 5.32007 * 6 5 4 8 8 C 1.50694 * 119.99909 * 185.31408 * 6 5 4 9 9 C 1.53002 * 112.91177 * 284.01373 * 8 6 5 10 10 C 1.53782 * 113.61109 * 55.26689 * 8 6 5 11 11 C 1.53779 * 87.08066 * 89.11327 * 10 8 6 12 12 F 1.39905 * 113.61214 * 139.98070 * 11 10 8 13 13 F 1.39899 * 113.61725 * 270.79735 * 11 10 8 14 14 C 1.53771 * 87.17436 * 25.39029 * 11 10 8 15 15 C 1.46927 * 118.73711 * 53.86051 * 5 4 2 16 16 C 1.53621 * 108.54595 * 306.09735 * 15 5 4 17 17 C 1.53041 * 109.49649 * 120.09752 * 2 1 3 18 18 H 1.08999 * 109.46492 * 61.29744 * 17 2 1 19 19 C 1.52995 * 109.45965 * 301.31962 * 17 2 1 20 20 N 1.46500 * 109.47307 * 175.00048 * 19 17 2 21 21 C 1.36934 * 120.00482 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99729 * 0.02562 * 21 20 19 23 23 C 1.38812 * 120.00057 * 180.02562 * 21 20 19 24 24 N 1.31622 * 119.99649 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00302 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47056 * 89.99882 * 25 23 21 27 27 H 1.48498 * 109.47282 * 210.00041 * 25 23 21 28 28 H 1.48498 * 109.46813 * 330.00233 * 25 23 21 29 29 H 1.09002 * 109.47213 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47101 * 300.06748 * 1 2 3 31 31 H 1.08997 * 109.47006 * 60.06664 * 1 2 3 32 32 H 1.09004 * 109.58135 * 65.62822 * 4 2 1 33 33 H 1.08995 * 109.70651 * 305.27161 * 4 2 1 34 34 H 1.09001 * 109.47081 * 196.26354 * 9 8 6 35 35 H 1.09001 * 109.46518 * 316.26522 * 9 8 6 36 36 H 1.08998 * 109.46608 * 76.26249 * 9 8 6 37 37 H 1.09003 * 113.61393 * 334.56378 * 10 8 6 38 38 H 1.08999 * 113.61479 * 203.65864 * 10 8 6 39 39 H 1.09002 * 113.61982 * 89.15956 * 14 11 10 40 40 H 1.09006 * 113.61494 * 220.05891 * 14 11 10 41 41 H 1.09006 * 109.58127 * 65.92695 * 15 5 4 42 42 H 1.08997 * 109.58354 * 186.34927 * 15 5 4 43 43 H 1.09009 * 109.63141 * 294.86450 * 16 15 5 44 44 H 1.08997 * 109.45907 * 174.74421 * 16 15 5 45 45 H 1.08995 * 109.47338 * 295.00095 * 19 17 2 46 46 H 1.09006 * 109.47111 * 55.00371 * 19 17 2 47 47 H 0.97003 * 119.99754 * 0.02562 * 20 19 17 48 48 H 0.97005 * 119.99908 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7236 -1.2498 5 7 3.5046 -0.8289 -1.1699 6 6 4.2811 -0.3860 -2.1785 7 8 3.7808 0.1919 -3.1201 8 6 5.7709 -0.6086 -2.1361 9 6 6.4875 0.3385 -1.1716 10 6 6.1685 -2.0837 -1.9603 11 6 6.1422 -2.1920 -3.4940 12 9 7.1822 -2.9666 -4.0190 13 9 4.8899 -2.5427 -4.0097 14 6 6.4216 -0.6803 -3.5296 15 6 4.1050 -1.4319 0.0279 16 6 3.5708 -0.6955 1.2658 17 6 2.0408 -0.7235 1.2481 18 1 1.6967 -1.7576 1.2349 19 6 1.5040 -0.0237 2.4983 20 7 1.8934 -0.7839 3.6886 21 6 1.5231 -0.3461 4.9321 22 1 0.9437 0.5595 5.0354 23 6 1.8925 -1.0661 6.0599 24 7 1.5361 -0.6455 7.2552 25 14 2.8953 -2.6320 5.8814 26 1 4.3422 -2.3006 5.9237 27 1 2.5672 -3.5595 6.9938 28 1 2.5737 -3.2805 4.5849 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5149 0.8894 31 1 -0.3633 0.5128 -0.8906 32 1 1.7637 -0.1574 -2.1390 33 1 1.6053 -1.7212 -1.3011 34 1 7.5558 0.3377 -1.3881 35 1 6.0929 1.3473 -1.2928 36 1 6.3242 0.0052 -0.1467 37 1 5.4055 -2.6857 -1.4669 38 1 7.1606 -2.2202 -1.5299 39 1 7.4831 -0.4322 -3.5290 40 1 5.8627 -0.1509 -4.3013 41 1 3.8338 -2.4863 0.0813 42 1 5.1896 -1.3333 -0.0180 43 1 3.9159 0.3385 1.2541 44 1 3.9335 -1.1898 2.1670 45 1 1.9190 0.9824 2.5580 46 1 0.4169 0.0342 2.4438 47 1 2.4141 -1.5970 3.5959 48 1 1.7939 -1.1489 8.0433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185471168.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:25 Heat of formation + Delta-G solvation = -102.894468 kcal Electronic energy + Delta-G solvation = -30278.871703 eV Core-core repulsion = 26005.441657 eV Total energy + Delta-G solvation = -4273.430046 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -49.12653 -47.45197 -41.16273 -38.80889 -37.29892 -35.24134 -33.68879 -32.10511 -30.73944 -30.12761 -27.37322 -27.31664 -26.46209 -24.35754 -23.29601 -22.63489 -21.72055 -21.03514 -19.91431 -18.82604 -17.83391 -17.63417 -17.06055 -16.95683 -16.40710 -16.18380 -15.42926 -14.93648 -14.78431 -14.34834 -14.30789 -14.29075 -14.02948 -13.77284 -13.69162 -13.49385 -13.30057 -13.07561 -13.01408 -12.97788 -12.68049 -12.55272 -12.44909 -12.01491 -11.94538 -11.73141 -11.44066 -11.39114 -11.29523 -11.03063 -10.93563 -10.82347 -10.54768 -10.45901 -10.17584 -10.11688 -9.87378 -9.61439 -8.92612 -8.75024 -7.25179 -5.79967 -3.15267 2.32070 2.67983 3.07836 3.31951 3.32811 3.33265 3.40930 3.68692 3.80461 3.90402 4.26853 4.54859 4.61367 4.74740 4.75752 4.81702 4.87956 4.90474 4.94461 5.04399 5.13447 5.18609 5.27811 5.32952 5.36276 5.39423 5.49674 5.54235 5.57205 5.63984 5.68038 5.69001 5.74686 5.79771 5.86557 6.08300 6.13003 6.17608 6.28958 6.34201 6.41023 6.70164 6.77705 7.18416 7.91794 7.96781 8.39188 9.18332 9.90527 10.10467 11.38687 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.016398 B = 0.003245 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.128724 B = 8626.939869 C = 9547.514104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 H 0.075 0.925 4 C 0.117 3.883 5 N -0.602 5.602 6 C 0.539 3.461 7 O -0.534 6.534 8 C -0.103 4.103 9 C -0.133 4.133 10 C -0.161 4.161 11 C 0.252 3.748 12 F -0.190 7.190 13 F -0.174 7.174 14 C -0.143 4.143 15 C 0.095 3.905 16 C -0.127 4.127 17 C -0.094 4.094 18 H 0.072 0.928 19 C 0.161 3.839 20 N -0.755 5.755 21 C -0.243 4.243 22 H 0.089 0.911 23 C 0.003 3.997 24 N -0.935 5.935 25 Si 0.884 3.116 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.278 1.278 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.108 0.892 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.025 0.975 46 H 0.033 0.967 47 H 0.359 0.641 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.614 -1.668 -21.949 24.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 H 0.093 0.907 4 C -0.005 4.005 5 N -0.334 5.334 6 C 0.326 3.674 7 O -0.410 6.410 8 C -0.107 4.107 9 C -0.190 4.190 10 C -0.199 4.199 11 C 0.216 3.784 12 F -0.171 7.171 13 F -0.154 7.154 14 C -0.181 4.181 15 C -0.027 4.027 16 C -0.165 4.165 17 C -0.113 4.113 18 H 0.090 0.910 19 C 0.034 3.966 20 N -0.401 5.401 21 C -0.373 4.373 22 H 0.107 0.893 23 C -0.192 4.192 24 N -0.583 5.583 25 Si 0.714 3.286 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.204 1.204 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.121 0.879 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.126 0.874 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.043 0.957 46 H 0.050 0.950 47 H 0.192 0.808 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.219 -1.254 -22.299 24.561 hybrid contribution 0.657 -1.413 0.063 1.560 sum 10.877 -2.667 -22.236 24.897 Atomic orbital electron populations 1.21841 0.94185 1.02254 1.02291 1.21437 0.96280 0.99979 0.93807 0.90654 1.21749 0.78312 1.01014 0.99382 1.48004 1.07087 1.60249 1.18040 1.19698 0.87311 0.78300 0.82076 1.90689 1.74640 1.41516 1.34174 1.21736 0.93654 0.96942 0.98330 1.21763 1.00182 0.98844 0.98213 1.24458 1.06093 0.95843 0.93539 1.22059 0.72771 0.90760 0.92801 1.93015 1.57354 1.77994 1.88697 1.93061 1.40736 1.93203 1.88444 1.24149 1.03905 0.92402 0.97687 1.22243 0.98551 0.97407 0.84536 1.22038 0.96301 1.01421 0.96781 1.21400 0.94574 1.00303 0.94977 0.90989 1.20734 0.97276 0.94093 0.84521 1.42729 1.66318 1.28448 1.02613 1.19064 1.28514 1.07822 0.81877 0.89290 1.24677 1.00775 0.98660 0.95120 1.69704 1.50911 1.40619 0.97054 0.86560 0.80586 0.84510 0.76947 1.21073 1.21729 1.20381 0.92504 0.91128 0.92848 0.89046 0.91377 0.90692 0.91142 0.90613 0.87943 0.85648 0.86085 0.87376 0.91087 0.89248 0.91150 0.89928 0.95664 0.94954 0.80776 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.82 37.16 0.33 -1.34 16 2 C -0.10 -1.13 2.41 -90.50 -0.22 -1.35 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.12 1.35 5.72 -3.70 -0.02 1.32 16 5 N -0.60 -6.70 2.96 -172.50 -0.51 -7.21 16 6 C 0.54 6.41 5.68 -10.99 -0.06 6.35 16 7 O -0.53 -8.12 15.52 5.56 0.09 -8.03 16 8 C -0.10 -0.87 0.71 -154.76 -0.11 -0.98 16 9 C -0.13 -0.88 8.95 37.16 0.33 -0.55 16 10 C -0.16 -1.18 5.72 -25.92 -0.15 -1.33 16 11 C 0.25 2.42 3.26 -25.92 -0.08 2.34 16 12 F -0.19 -1.93 17.41 2.25 0.04 -1.89 16 13 F -0.17 -2.18 16.57 2.25 0.04 -2.14 16 14 C -0.14 -1.16 6.93 -25.83 -0.18 -1.34 16 15 C 0.10 0.93 4.66 -3.49 -0.02 0.91 16 16 C -0.13 -1.56 5.26 -26.39 -0.14 -1.70 16 17 C -0.09 -1.28 1.73 -90.58 -0.16 -1.44 16 18 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 19 C 0.16 2.90 5.41 -4.04 -0.02 2.88 16 20 N -0.76 -17.04 5.12 -59.91 -0.31 -17.35 16 21 C -0.24 -6.71 10.47 -15.06 -0.16 -6.87 16 22 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 23 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 24 N -0.93 -29.00 13.97 55.49 0.78 -28.22 16 25 Si 0.88 21.36 27.74 -169.99 -4.71 16.65 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.87 6.30 -51.93 -0.33 0.54 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 1.13 7.00 -51.93 -0.36 0.77 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.34 7.85 -51.93 -0.41 -0.06 16 35 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 36 H 0.08 0.48 6.33 -51.93 -0.33 0.15 16 37 H 0.10 0.77 6.18 -51.93 -0.32 0.45 16 38 H 0.13 0.61 8.10 -51.93 -0.42 0.19 16 39 H 0.12 0.65 7.90 -51.93 -0.41 0.24 16 40 H 0.11 1.04 7.41 -51.93 -0.38 0.66 16 41 H 0.07 0.65 8.03 -51.93 -0.42 0.24 16 42 H 0.09 0.69 3.45 -51.93 -0.18 0.51 16 43 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 44 H 0.08 1.12 7.15 -51.93 -0.37 0.75 16 45 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.03 0.60 6.14 -51.93 -0.32 0.28 16 47 H 0.36 7.81 4.70 -40.82 -0.19 7.62 16 48 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 369.29 15.07 5.57 5.57 Total: -1.00 -33.31 369.29 -7.19 -40.50 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -7.41 Total: 5.23 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -0.75 Total: -3.10 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.04 Total: -52.78 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.09 Total: -8.03 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.08 Total: -4.03 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.71 Total: 16.65 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.31 -7.19 -40.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185471168.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.389 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds