Wall clock time and date at job start Tue Mar 31 2020 17:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.49701 * 2 1 4 4 C 1.53199 * 109.49452 * 239.93194 * 2 1 3 5 5 N 1.46931 * 108.77331 * 185.41286 * 4 2 1 6 6 C 1.34778 * 120.63087 * 233.58632 * 5 4 2 7 7 O 1.21280 * 119.99506 * 5.32007 * 6 5 4 8 8 C 1.50694 * 119.99909 * 185.31408 * 6 5 4 9 9 C 1.53002 * 112.91177 * 284.01373 * 8 6 5 10 10 C 1.53782 * 113.61109 * 55.26689 * 8 6 5 11 11 C 1.53779 * 87.08066 * 89.11327 * 10 8 6 12 12 F 1.39905 * 113.61214 * 139.98070 * 11 10 8 13 13 F 1.39899 * 113.61725 * 270.79735 * 11 10 8 14 14 C 1.53771 * 87.17436 * 25.39029 * 11 10 8 15 15 C 1.46927 * 118.73711 * 53.86051 * 5 4 2 16 16 C 1.53621 * 108.54595 * 306.09735 * 15 5 4 17 17 C 1.53041 * 109.49649 * 120.09752 * 2 1 3 18 18 H 1.08999 * 109.46492 * 61.29744 * 17 2 1 19 19 C 1.52995 * 109.45965 * 301.31962 * 17 2 1 20 20 N 1.46500 * 109.47307 * 175.00048 * 19 17 2 21 21 C 1.36934 * 120.00482 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99729 * 0.02562 * 21 20 19 23 23 C 1.38812 * 120.00057 * 180.02562 * 21 20 19 24 24 N 1.31622 * 119.99649 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00302 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47056 * 89.99882 * 25 23 21 27 27 H 1.48498 * 109.47282 * 210.00041 * 25 23 21 28 28 H 1.48498 * 109.46813 * 330.00233 * 25 23 21 29 29 H 1.09002 * 109.47213 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47101 * 300.06748 * 1 2 3 31 31 H 1.08997 * 109.47006 * 60.06664 * 1 2 3 32 32 H 1.09004 * 109.58135 * 65.62822 * 4 2 1 33 33 H 1.08995 * 109.70651 * 305.27161 * 4 2 1 34 34 H 1.09001 * 109.47081 * 196.26354 * 9 8 6 35 35 H 1.09001 * 109.46518 * 316.26522 * 9 8 6 36 36 H 1.08998 * 109.46608 * 76.26249 * 9 8 6 37 37 H 1.09003 * 113.61393 * 334.56378 * 10 8 6 38 38 H 1.08999 * 113.61479 * 203.65864 * 10 8 6 39 39 H 1.09002 * 113.61982 * 89.15956 * 14 11 10 40 40 H 1.09006 * 113.61494 * 220.05891 * 14 11 10 41 41 H 1.09006 * 109.58127 * 65.92695 * 15 5 4 42 42 H 1.08997 * 109.58354 * 186.34927 * 15 5 4 43 43 H 1.09009 * 109.63141 * 294.86450 * 16 15 5 44 44 H 1.08997 * 109.45907 * 174.74421 * 16 15 5 45 45 H 1.08995 * 109.47338 * 295.00095 * 19 17 2 46 46 H 1.09006 * 109.47111 * 55.00371 * 19 17 2 47 47 H 0.97003 * 119.99754 * 0.02562 * 20 19 17 48 48 H 0.97005 * 119.99908 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7236 -1.2498 5 7 3.5046 -0.8289 -1.1699 6 6 4.2811 -0.3860 -2.1785 7 8 3.7808 0.1919 -3.1201 8 6 5.7709 -0.6086 -2.1361 9 6 6.4875 0.3385 -1.1716 10 6 6.1685 -2.0837 -1.9603 11 6 6.1422 -2.1920 -3.4940 12 9 7.1822 -2.9666 -4.0190 13 9 4.8899 -2.5427 -4.0097 14 6 6.4216 -0.6803 -3.5296 15 6 4.1050 -1.4319 0.0279 16 6 3.5708 -0.6955 1.2658 17 6 2.0408 -0.7235 1.2481 18 1 1.6967 -1.7576 1.2349 19 6 1.5040 -0.0237 2.4983 20 7 1.8934 -0.7839 3.6886 21 6 1.5231 -0.3461 4.9321 22 1 0.9437 0.5595 5.0354 23 6 1.8925 -1.0661 6.0599 24 7 1.5361 -0.6455 7.2552 25 14 2.8953 -2.6320 5.8814 26 1 4.3422 -2.3006 5.9237 27 1 2.5672 -3.5595 6.9938 28 1 2.5737 -3.2805 4.5849 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5149 0.8894 31 1 -0.3633 0.5128 -0.8906 32 1 1.7637 -0.1574 -2.1390 33 1 1.6053 -1.7212 -1.3011 34 1 7.5558 0.3377 -1.3881 35 1 6.0929 1.3473 -1.2928 36 1 6.3242 0.0052 -0.1467 37 1 5.4055 -2.6857 -1.4669 38 1 7.1606 -2.2202 -1.5299 39 1 7.4831 -0.4322 -3.5290 40 1 5.8627 -0.1509 -4.3013 41 1 3.8338 -2.4863 0.0813 42 1 5.1896 -1.3333 -0.0180 43 1 3.9159 0.3385 1.2541 44 1 3.9335 -1.1898 2.1670 45 1 1.9190 0.9824 2.5580 46 1 0.4169 0.0342 2.4438 47 1 2.4141 -1.5970 3.5959 48 1 1.7939 -1.1489 8.0433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185471168.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:23 Heat of formation + Delta-G solvation = -123.611480 kcal Electronic energy + Delta-G solvation = -30279.770060 eV Core-core repulsion = 26005.441657 eV Total energy + Delta-G solvation = -4274.328403 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -49.88547 -48.22473 -41.99239 -39.77547 -38.17860 -36.71513 -35.00276 -33.59147 -32.32753 -30.71274 -28.70878 -28.14989 -27.14402 -25.62481 -24.41506 -23.73762 -22.77007 -22.20483 -20.97997 -19.79685 -19.44575 -18.56096 -17.90920 -17.64190 -17.16678 -17.05708 -16.66884 -16.35044 -15.93599 -15.65604 -15.43588 -15.09846 -14.96114 -14.84235 -14.64738 -14.50519 -14.34638 -14.30042 -14.01027 -13.84806 -13.60524 -13.34422 -13.26002 -13.16889 -13.11612 -12.90529 -12.78015 -12.64604 -12.16817 -12.07843 -11.98178 -11.91500 -11.83451 -11.65146 -11.54152 -11.35382 -11.24263 -10.93902 -10.76347 -9.69032 -9.25367 -8.00291 -5.33919 1.39392 1.44850 1.46240 1.52406 1.85686 2.43242 2.51520 2.71364 3.06072 3.13936 3.22317 3.31149 3.51811 3.57999 3.72790 3.81385 3.96517 4.05269 4.16152 4.25587 4.30602 4.35825 4.43637 4.48436 4.54625 4.60762 4.64372 4.65410 4.71186 4.75510 4.79745 4.86800 4.90354 4.94174 5.00265 5.06203 5.10497 5.18168 5.25539 5.27571 5.35030 5.48151 5.57799 5.78268 6.23406 6.32210 7.03936 7.10999 7.86494 8.07599 9.21623 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.016398 B = 0.003245 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.128724 B = 8626.939869 C = 9547.514104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 H 0.065 0.935 4 C 0.120 3.880 5 N -0.602 5.602 6 C 0.532 3.468 7 O -0.576 6.576 8 C -0.103 4.103 9 C -0.130 4.130 10 C -0.147 4.147 11 C 0.234 3.766 12 F -0.195 7.195 13 F -0.197 7.197 14 C -0.138 4.138 15 C 0.099 3.901 16 C -0.126 4.126 17 C -0.084 4.084 18 H 0.077 0.923 19 C 0.159 3.841 20 N -0.753 5.753 21 C -0.235 4.235 22 H 0.050 0.950 23 C -0.067 4.067 24 N -0.988 5.988 25 Si 0.958 3.042 26 H -0.271 1.271 27 H -0.300 1.300 28 H -0.246 1.246 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.160 0.840 39 H 0.154 0.846 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.115 0.885 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.016 0.984 46 H 0.027 0.973 47 H 0.368 0.632 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.128 -3.522 -23.102 26.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 H 0.084 0.916 4 C -0.002 4.002 5 N -0.334 5.334 6 C 0.320 3.680 7 O -0.455 6.455 8 C -0.106 4.106 9 C -0.187 4.187 10 C -0.184 4.184 11 C 0.198 3.802 12 F -0.175 7.175 13 F -0.178 7.178 14 C -0.176 4.176 15 C -0.023 4.023 16 C -0.164 4.164 17 C -0.103 4.103 18 H 0.095 0.905 19 C 0.033 3.967 20 N -0.400 5.400 21 C -0.366 4.366 22 H 0.068 0.932 23 C -0.258 4.258 24 N -0.638 5.638 25 Si 0.784 3.216 26 H -0.197 1.197 27 H -0.227 1.227 28 H -0.170 1.170 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.122 0.878 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.178 0.822 39 H 0.172 0.828 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.133 0.867 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.034 0.966 46 H 0.045 0.955 47 H 0.202 0.798 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.739 -3.108 -23.498 26.909 hybrid contribution -0.223 -0.705 0.382 0.832 sum 12.515 -3.814 -23.116 26.562 Atomic orbital electron populations 1.21818 0.93758 1.02649 1.02185 1.21318 0.96610 0.99273 0.93301 0.91631 1.21664 0.79016 1.01277 0.98269 1.48101 1.06893 1.59935 1.18423 1.20374 0.88887 0.77317 0.81394 1.90669 1.75744 1.43357 1.35742 1.21707 0.91216 0.98508 0.99191 1.21807 1.01554 0.97426 0.97940 1.24534 1.08009 0.94310 0.91560 1.22535 0.71793 0.91441 0.94432 1.93001 1.57364 1.78209 1.88968 1.93011 1.42387 1.93460 1.88976 1.24244 1.05478 0.91033 0.96855 1.22346 0.99908 0.97550 0.82457 1.21997 0.94902 1.01599 0.97891 1.21294 0.95835 0.99976 0.93165 0.90492 1.20860 0.97062 0.93744 0.85004 1.42665 1.66230 1.29028 1.02035 1.19019 1.27095 1.06345 0.84184 0.93184 1.25582 1.02764 1.02979 0.94506 1.69909 1.53122 1.42669 0.98132 0.85371 0.78981 0.79344 0.77898 1.19718 1.22684 1.17046 0.91847 0.92600 0.91595 0.90213 0.90234 0.87830 0.92561 0.89886 0.87808 0.82182 0.82840 0.89532 0.89567 0.86674 0.91611 0.90531 0.96631 0.95520 0.79831 0.93382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.82 71.98 0.63 -2.54 16 2 C -0.09 -1.93 2.41 -10.71 -0.03 -1.96 16 3 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 4 C 0.12 2.58 5.72 86.36 0.49 3.08 16 5 N -0.60 -12.19 2.96 -818.04 -2.42 -14.61 16 6 C 0.53 11.88 5.68 87.65 0.50 12.38 16 7 O -0.58 -17.50 15.52 -3.03 -0.05 -17.55 16 8 C -0.10 -1.45 0.71 -52.34 -0.04 -1.49 16 9 C -0.13 -1.26 8.95 71.98 0.64 -0.61 16 10 C -0.15 -1.57 5.72 31.12 0.18 -1.39 16 11 C 0.23 3.98 3.26 31.12 0.10 4.08 16 12 F -0.19 -3.52 17.41 44.97 0.78 -2.73 16 13 F -0.20 -4.80 16.57 44.97 0.75 -4.05 16 14 C -0.14 -1.93 6.93 31.18 0.22 -1.71 16 15 C 0.10 1.59 4.66 86.51 0.40 1.99 16 16 C -0.13 -2.76 5.26 30.82 0.16 -2.60 16 17 C -0.08 -2.15 1.73 -10.77 -0.02 -2.17 16 18 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 19 C 0.16 5.68 5.41 86.38 0.47 6.15 16 20 N -0.75 -33.28 5.12 -343.46 -1.76 -35.04 16 21 C -0.24 -13.20 10.47 84.03 0.88 -12.32 16 22 H 0.05 3.13 8.06 -2.91 -0.02 3.10 16 23 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 24 N -0.99 -62.77 13.97 21.65 0.30 -62.47 16 25 Si 0.96 43.25 27.74 68.60 1.90 45.16 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 28 H -0.25 -9.73 6.52 99.48 0.65 -9.08 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.37 6.30 -2.39 -0.02 1.36 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.95 7.00 -2.39 -0.02 1.93 16 33 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.10 0.44 7.85 -2.39 -0.02 0.42 16 35 H 0.06 0.73 8.11 -2.39 -0.02 0.71 16 36 H 0.08 0.69 6.33 -2.39 -0.02 0.68 16 37 H 0.10 1.14 6.18 -2.39 -0.01 1.12 16 38 H 0.16 0.64 8.10 -2.39 -0.02 0.62 16 39 H 0.15 1.07 7.90 -2.39 -0.02 1.05 16 40 H 0.09 1.62 7.41 -2.38 -0.02 1.60 16 41 H 0.09 1.20 8.03 -2.38 -0.02 1.18 16 42 H 0.12 1.27 3.45 -2.39 -0.01 1.26 16 43 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 44 H 0.08 1.82 7.15 -2.39 -0.02 1.80 16 45 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.03 1.00 6.14 -2.38 -0.01 0.98 16 47 H 0.37 15.01 4.70 -92.71 -0.44 14.57 16 48 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 Total: -1.00 -75.37 369.29 5.05 -70.32 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.48 Total: 23.50 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 5.06 Total: -2.52 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -3.88 Total: -112.12 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.05 Total: -17.55 kcal Atomic # 9 Polarization: -8.31 SS G_CDS: 1.53 Total: -6.79 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.90 Total: 45.16 kcal Total: -75.37 5.05 -70.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185471168.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.292 kcal (2) G-P(sol) polarization free energy of solvation -75.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds