Wall clock time and date at job start Tue Mar 31 2020 17:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.52744 * 2 1 4 4 C 1.53183 * 109.50270 * 120.08499 * 2 1 3 5 5 N 1.46921 * 108.77778 * 65.31444 * 4 2 1 6 6 C 1.34776 * 120.63251 * 233.63583 * 5 4 2 7 7 O 1.21281 * 120.00156 * 355.37603 * 6 5 4 8 8 C 1.50700 * 120.00132 * 175.37917 * 6 5 4 9 9 C 1.53002 * 112.85187 * 67.79897 * 8 6 5 10 10 C 1.53787 * 113.61423 * 296.60153 * 8 6 5 11 11 C 1.53955 * 87.01769 * 220.04990 * 10 8 6 12 12 F 1.39903 * 113.53425 * 270.81113 * 11 10 8 13 13 F 1.39901 * 113.66574 * 139.93654 * 11 10 8 14 14 C 1.53778 * 87.11610 * 25.36054 * 11 10 8 15 15 C 1.46926 * 118.74044 * 53.60800 * 5 4 2 16 16 C 1.53195 * 108.89501 * 306.32525 * 15 5 4 17 17 C 1.53046 * 109.49679 * 239.92403 * 2 1 3 18 18 H 1.08994 * 109.46353 * 181.40280 * 17 2 1 19 19 C 1.52999 * 109.45917 * 61.43120 * 17 2 1 20 20 N 1.46507 * 109.47156 * 175.00262 * 19 17 2 21 21 C 1.36933 * 120.00345 * 179.97438 * 20 19 17 22 22 H 1.08007 * 119.99470 * 0.02562 * 21 20 19 23 23 C 1.38809 * 120.00363 * 180.02562 * 21 20 19 24 24 N 1.31616 * 120.00157 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 119.99574 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47286 * 90.00706 * 25 23 21 27 27 H 1.48504 * 109.47108 * 210.00198 * 25 23 21 28 28 H 1.48494 * 109.47704 * 330.00173 * 25 23 21 29 29 H 1.09008 * 109.47111 * 299.91487 * 1 2 3 30 30 H 1.08997 * 109.47395 * 59.91411 * 1 2 3 31 31 H 1.09006 * 109.47422 * 179.91818 * 1 2 3 32 32 H 1.09007 * 109.58744 * 305.52844 * 4 2 1 33 33 H 1.09008 * 109.70792 * 185.17533 * 4 2 1 34 34 H 1.08994 * 109.46934 * 66.36436 * 9 8 6 35 35 H 1.08999 * 109.47246 * 186.36359 * 9 8 6 36 36 H 1.09001 * 109.47123 * 306.36278 * 9 8 6 37 37 H 1.08997 * 113.60986 * 334.56950 * 10 8 6 38 38 H 1.09000 * 113.60995 * 105.46760 * 10 8 6 39 39 H 1.08995 * 113.61866 * 220.08698 * 14 11 10 40 40 H 1.08996 * 113.60983 * 89.18384 * 14 11 10 41 41 H 1.09006 * 109.58476 * 66.17935 * 15 5 4 42 42 H 1.09001 * 109.59231 * 186.46164 * 15 5 4 43 43 H 1.08994 * 109.49946 * 174.65612 * 16 15 5 44 44 H 1.09004 * 109.49482 * 294.75291 * 16 15 5 45 45 H 1.09000 * 109.47147 * 294.99967 * 19 17 2 46 46 H 1.09000 * 109.47293 * 55.00191 * 19 17 2 47 47 H 0.96998 * 119.99865 * 359.97438 * 20 19 17 48 48 H 0.96999 * 120.00366 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2494 5 7 1.6516 -2.1381 1.1694 6 6 0.9741 -2.7219 2.1777 7 8 0.7535 -2.1040 3.1978 8 6 0.4906 -4.1423 2.0378 9 6 1.6342 -5.1581 1.9986 10 6 -0.5421 -4.3337 0.9144 11 6 -1.2858 -5.2847 1.8697 12 9 -0.8643 -6.6153 1.7736 13 9 -2.6775 -5.1499 1.8255 14 6 -0.6283 -4.5124 3.0256 15 6 2.0139 -2.9040 -0.0310 16 6 1.5025 -2.1589 -1.2679 17 6 2.0407 -0.7230 -1.2485 18 1 3.1304 -0.7445 -1.2354 19 6 1.5605 0.0172 -2.4984 20 7 2.1465 -0.6037 -3.6890 21 6 1.8575 -0.1081 -4.9323 22 1 1.1979 0.7410 -5.0352 23 6 2.4123 -0.6967 -6.0604 24 7 2.1349 -0.2199 -7.2554 25 14 3.5538 -2.1645 -5.8822 26 1 2.7585 -3.4180 -5.9240 27 1 4.5370 -2.1649 -6.9951 28 1 4.2733 -2.0778 -4.5862 29 1 -0.3634 0.5125 0.8908 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3634 -1.0277 -0.0015 32 1 1.6008 -0.2732 2.1389 33 1 3.1275 -0.6464 1.3004 34 1 2.1406 -5.1724 2.9636 35 1 1.2331 -6.1486 1.7839 36 1 2.3435 -4.8768 1.2201 37 1 -1.1011 -3.4287 0.6765 38 1 -0.1391 -4.8282 0.0306 39 1 -0.2951 -5.1510 3.8437 40 1 -1.2110 -3.6564 3.3659 41 1 3.0979 -3.0042 -0.0870 42 1 1.5575 -3.8928 0.0147 43 1 1.8474 -2.6681 -2.1678 44 1 0.4127 -2.1387 -1.2557 45 1 0.4735 -0.0374 -2.5579 46 1 1.8694 1.0611 -2.4437 47 1 2.7392 -1.3659 -3.5965 48 1 2.5223 -0.6314 -8.0437 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185471170.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:36 Heat of formation + Delta-G solvation = -100.970121 kcal Electronic energy + Delta-G solvation = -30452.605774 eV Core-core repulsion = 26179.259174 eV Total energy + Delta-G solvation = -4273.346600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.18483 -47.49811 -41.20839 -38.93028 -37.40123 -35.22099 -33.53937 -31.95842 -30.75506 -29.83937 -27.45020 -27.26293 -26.60978 -24.70365 -23.40098 -23.12644 -21.68169 -20.88327 -19.44006 -18.60700 -18.20341 -17.50081 -17.14791 -16.94814 -16.33225 -15.68164 -15.62389 -15.09738 -14.77581 -14.51648 -14.39157 -14.26277 -14.10836 -13.96780 -13.85315 -13.71360 -13.48035 -12.98288 -12.84152 -12.79672 -12.60579 -12.49240 -12.33574 -12.27596 -11.76179 -11.63889 -11.56666 -11.42549 -11.35959 -11.10508 -10.87839 -10.84165 -10.53747 -10.36064 -10.23298 -10.13202 -9.82297 -9.61904 -8.92623 -8.77515 -7.26020 -5.80206 -3.15670 2.30743 2.67640 3.06364 3.31802 3.33173 3.34320 3.40889 3.72141 3.77795 3.94677 4.28898 4.54637 4.59772 4.64136 4.73619 4.83072 4.90766 4.93064 4.98947 5.06811 5.11218 5.18015 5.24050 5.35213 5.37446 5.38849 5.49563 5.54240 5.57566 5.62384 5.66787 5.67998 5.73660 5.77159 5.86890 6.04173 6.09423 6.21887 6.23664 6.29424 6.45211 6.64813 6.77021 7.17144 7.89819 7.96352 8.38862 9.18012 9.90162 10.09940 11.38436 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.014313 B = 0.003432 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.843228 B = 8157.527496 C = 8971.909950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 H 0.085 0.915 4 C 0.116 3.884 5 N -0.598 5.598 6 C 0.537 3.463 7 O -0.539 6.539 8 C -0.102 4.102 9 C -0.145 4.145 10 C -0.154 4.154 11 C 0.257 3.743 12 F -0.176 7.176 13 F -0.187 7.187 14 C -0.136 4.136 15 C 0.095 3.905 16 C -0.131 4.131 17 C -0.093 4.093 18 H 0.071 0.929 19 C 0.163 3.837 20 N -0.755 5.755 21 C -0.244 4.244 22 H 0.089 0.911 23 C 0.004 3.996 24 N -0.934 5.934 25 Si 0.883 3.117 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.278 1.278 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.121 0.879 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.030 0.970 46 H 0.026 0.974 47 H 0.359 0.641 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.497 -9.610 22.147 24.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.103 0.897 4 C -0.006 4.006 5 N -0.331 5.331 6 C 0.324 3.676 7 O -0.417 6.417 8 C -0.105 4.105 9 C -0.202 4.202 10 C -0.192 4.192 11 C 0.220 3.780 12 F -0.157 7.157 13 F -0.167 7.167 14 C -0.174 4.174 15 C -0.028 4.028 16 C -0.169 4.169 17 C -0.112 4.112 18 H 0.090 0.910 19 C 0.035 3.965 20 N -0.401 5.401 21 C -0.374 4.374 22 H 0.107 0.893 23 C -0.192 4.192 24 N -0.582 5.582 25 Si 0.714 3.286 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.204 1.204 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.136 0.864 38 H 0.125 0.875 39 H 0.118 0.882 40 H 0.140 0.860 41 H 0.090 0.910 42 H 0.108 0.892 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.048 0.952 46 H 0.044 0.956 47 H 0.192 0.808 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.730 -9.157 22.498 24.443 hybrid contribution 0.789 -1.197 -0.277 1.460 sum -1.941 -10.354 22.221 24.592 Atomic orbital electron populations 1.21875 0.94774 1.01857 1.01809 1.21456 0.96750 0.99606 0.93881 0.89723 1.21720 0.99594 0.79975 0.99283 1.48009 1.55341 1.11664 1.18048 1.19896 0.77436 0.87280 0.82953 1.90694 1.57356 1.65027 1.28578 1.21811 0.96061 0.94772 0.97864 1.21929 0.96343 0.98100 1.03798 1.24324 0.96235 1.00526 0.98075 1.21975 0.75967 0.79224 1.00806 1.93000 1.89088 1.36639 1.96939 1.93031 1.31038 1.95525 1.97154 1.24018 0.95623 1.01129 0.96650 1.22142 1.00682 0.95449 0.84487 1.22074 1.01829 0.96118 0.96875 1.21418 1.00266 0.94590 0.94911 0.91042 1.20694 0.96315 0.94873 0.84569 1.42728 1.57305 1.37471 1.02606 1.19061 1.24127 1.12285 0.81887 0.89302 1.24671 1.00235 0.99141 0.95113 1.69697 1.48375 1.43118 0.97058 0.86565 0.81286 0.83835 0.76932 1.21059 1.21732 1.20394 0.93176 0.91672 0.92766 0.89055 0.91427 0.90979 0.90025 0.90529 0.86362 0.87533 0.88152 0.86033 0.91006 0.89226 0.90000 0.90842 0.95213 0.95644 0.80764 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.38 37.15 0.31 -1.34 16 2 C -0.10 -1.08 2.72 -90.51 -0.25 -1.33 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 4 C 0.12 1.21 5.81 -3.72 -0.02 1.19 16 5 N -0.60 -6.05 2.41 -172.77 -0.42 -6.47 16 6 C 0.54 5.85 6.68 -10.99 -0.07 5.77 16 7 O -0.54 -7.56 15.64 5.56 0.09 -7.48 16 8 C -0.10 -0.86 0.70 -154.84 -0.11 -0.96 16 9 C -0.14 -1.00 8.59 37.16 0.32 -0.68 16 10 C -0.15 -1.24 5.78 -25.82 -0.15 -1.39 16 11 C 0.26 2.31 3.27 -25.83 -0.08 2.22 16 12 F -0.18 -1.68 15.49 2.25 0.03 -1.64 16 13 F -0.19 -2.01 17.41 2.25 0.04 -1.97 16 14 C -0.14 -1.13 6.68 -25.92 -0.17 -1.31 16 15 C 0.09 0.88 4.95 -3.71 -0.02 0.86 16 16 C -0.13 -1.55 4.93 -26.45 -0.13 -1.68 16 17 C -0.09 -1.23 1.96 -90.41 -0.18 -1.40 16 18 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 19 C 0.16 2.89 5.19 -4.04 -0.02 2.86 16 20 N -0.76 -16.94 5.12 -59.90 -0.31 -17.24 16 21 C -0.24 -6.72 10.47 -15.06 -0.16 -6.88 16 22 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 23 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 24 N -0.93 -28.97 13.97 55.49 0.78 -28.20 16 25 Si 0.88 21.35 27.73 -169.99 -4.71 16.64 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 29 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.06 0.79 6.59 -51.93 -0.34 0.45 16 31 H 0.05 0.62 5.97 -51.93 -0.31 0.31 16 32 H 0.09 1.03 7.03 -51.92 -0.37 0.66 16 33 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.54 6.17 -51.93 -0.32 0.22 16 36 H 0.08 0.49 5.69 -51.93 -0.30 0.19 16 37 H 0.12 0.98 8.09 -51.93 -0.42 0.56 16 38 H 0.11 0.75 7.22 -51.93 -0.37 0.37 16 39 H 0.10 0.72 8.10 -51.93 -0.42 0.30 16 40 H 0.12 1.09 7.76 -51.93 -0.40 0.69 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 0.69 3.29 -51.93 -0.17 0.51 16 43 H 0.08 1.09 7.16 -51.93 -0.37 0.72 16 44 H 0.07 0.88 6.34 -51.93 -0.33 0.55 16 45 H 0.03 0.55 6.74 -51.93 -0.35 0.20 16 46 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.36 7.76 4.71 -40.82 -0.19 7.57 16 48 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 364.35 15.07 5.49 5.49 Total: -1.00 -32.33 364.35 -7.05 -39.39 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -7.22 Total: 5.53 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -0.83 Total: -4.04 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: 0.05 Total: -51.91 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.09 Total: -7.48 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.07 Total: -3.62 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.71 Total: 16.64 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.33 -7.05 -39.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185471170.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.583 kcal (2) G-P(sol) polarization free energy of solvation -32.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds