Wall clock time and date at job start Tue Mar 31 2020 17:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.52744 * 2 1 4 4 C 1.53183 * 109.50270 * 120.08499 * 2 1 3 5 5 N 1.46921 * 108.77778 * 65.31444 * 4 2 1 6 6 C 1.34776 * 120.63251 * 233.63583 * 5 4 2 7 7 O 1.21281 * 120.00156 * 355.37603 * 6 5 4 8 8 C 1.50700 * 120.00132 * 175.37917 * 6 5 4 9 9 C 1.53002 * 112.85187 * 67.79897 * 8 6 5 10 10 C 1.53787 * 113.61423 * 296.60153 * 8 6 5 11 11 C 1.53955 * 87.01769 * 220.04990 * 10 8 6 12 12 F 1.39903 * 113.53425 * 270.81113 * 11 10 8 13 13 F 1.39901 * 113.66574 * 139.93654 * 11 10 8 14 14 C 1.53778 * 87.11610 * 25.36054 * 11 10 8 15 15 C 1.46926 * 118.74044 * 53.60800 * 5 4 2 16 16 C 1.53195 * 108.89501 * 306.32525 * 15 5 4 17 17 C 1.53046 * 109.49679 * 239.92403 * 2 1 3 18 18 H 1.08994 * 109.46353 * 181.40280 * 17 2 1 19 19 C 1.52999 * 109.45917 * 61.43120 * 17 2 1 20 20 N 1.46507 * 109.47156 * 175.00262 * 19 17 2 21 21 C 1.36933 * 120.00345 * 179.97438 * 20 19 17 22 22 H 1.08007 * 119.99470 * 0.02562 * 21 20 19 23 23 C 1.38809 * 120.00363 * 180.02562 * 21 20 19 24 24 N 1.31616 * 120.00157 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 119.99574 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47286 * 90.00706 * 25 23 21 27 27 H 1.48504 * 109.47108 * 210.00198 * 25 23 21 28 28 H 1.48494 * 109.47704 * 330.00173 * 25 23 21 29 29 H 1.09008 * 109.47111 * 299.91487 * 1 2 3 30 30 H 1.08997 * 109.47395 * 59.91411 * 1 2 3 31 31 H 1.09006 * 109.47422 * 179.91818 * 1 2 3 32 32 H 1.09007 * 109.58744 * 305.52844 * 4 2 1 33 33 H 1.09008 * 109.70792 * 185.17533 * 4 2 1 34 34 H 1.08994 * 109.46934 * 66.36436 * 9 8 6 35 35 H 1.08999 * 109.47246 * 186.36359 * 9 8 6 36 36 H 1.09001 * 109.47123 * 306.36278 * 9 8 6 37 37 H 1.08997 * 113.60986 * 334.56950 * 10 8 6 38 38 H 1.09000 * 113.60995 * 105.46760 * 10 8 6 39 39 H 1.08995 * 113.61866 * 220.08698 * 14 11 10 40 40 H 1.08996 * 113.60983 * 89.18384 * 14 11 10 41 41 H 1.09006 * 109.58476 * 66.17935 * 15 5 4 42 42 H 1.09001 * 109.59231 * 186.46164 * 15 5 4 43 43 H 1.08994 * 109.49946 * 174.65612 * 16 15 5 44 44 H 1.09004 * 109.49482 * 294.75291 * 16 15 5 45 45 H 1.09000 * 109.47147 * 294.99967 * 19 17 2 46 46 H 1.09000 * 109.47293 * 55.00191 * 19 17 2 47 47 H 0.96998 * 119.99865 * 359.97438 * 20 19 17 48 48 H 0.96999 * 120.00366 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2494 5 7 1.6516 -2.1381 1.1694 6 6 0.9741 -2.7219 2.1777 7 8 0.7535 -2.1040 3.1978 8 6 0.4906 -4.1423 2.0378 9 6 1.6342 -5.1581 1.9986 10 6 -0.5421 -4.3337 0.9144 11 6 -1.2858 -5.2847 1.8697 12 9 -0.8643 -6.6153 1.7736 13 9 -2.6775 -5.1499 1.8255 14 6 -0.6283 -4.5124 3.0256 15 6 2.0139 -2.9040 -0.0310 16 6 1.5025 -2.1589 -1.2679 17 6 2.0407 -0.7230 -1.2485 18 1 3.1304 -0.7445 -1.2354 19 6 1.5605 0.0172 -2.4984 20 7 2.1465 -0.6037 -3.6890 21 6 1.8575 -0.1081 -4.9323 22 1 1.1979 0.7410 -5.0352 23 6 2.4123 -0.6967 -6.0604 24 7 2.1349 -0.2199 -7.2554 25 14 3.5538 -2.1645 -5.8822 26 1 2.7585 -3.4180 -5.9240 27 1 4.5370 -2.1649 -6.9951 28 1 4.2733 -2.0778 -4.5862 29 1 -0.3634 0.5125 0.8908 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3634 -1.0277 -0.0015 32 1 1.6008 -0.2732 2.1389 33 1 3.1275 -0.6464 1.3004 34 1 2.1406 -5.1724 2.9636 35 1 1.2331 -6.1486 1.7839 36 1 2.3435 -4.8768 1.2201 37 1 -1.1011 -3.4287 0.6765 38 1 -0.1391 -4.8282 0.0306 39 1 -0.2951 -5.1510 3.8437 40 1 -1.2110 -3.6564 3.3659 41 1 3.0979 -3.0042 -0.0870 42 1 1.5575 -3.8928 0.0147 43 1 1.8474 -2.6681 -2.1678 44 1 0.4127 -2.1387 -1.2557 45 1 0.4735 -0.0374 -2.5579 46 1 1.8694 1.0611 -2.4437 47 1 2.7392 -1.3659 -3.5965 48 1 2.5223 -0.6314 -8.0437 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185471170.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:34 Heat of formation + Delta-G solvation = -120.034945 kcal Electronic energy + Delta-G solvation = -30453.432486 eV Core-core repulsion = 26179.259174 eV Total energy + Delta-G solvation = -4274.173313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 3.21 seconds Orbital eigenvalues (eV) -49.91647 -48.24887 -42.01857 -39.84702 -38.25528 -36.69907 -34.84181 -33.42424 -32.22963 -30.46469 -28.77906 -28.11318 -27.29786 -25.77031 -24.71424 -24.09805 -22.95864 -21.90648 -20.29334 -19.90205 -19.17708 -18.79869 -17.84378 -17.78158 -17.13187 -16.77630 -16.46616 -16.35034 -15.96848 -15.74447 -15.32873 -15.16920 -15.09891 -14.95407 -14.75200 -14.67647 -14.50037 -14.39975 -13.98055 -13.69833 -13.57635 -13.37907 -13.24010 -13.22601 -12.99934 -12.83130 -12.65895 -12.42447 -12.27074 -12.18699 -12.07544 -11.94903 -11.83463 -11.57756 -11.49136 -11.30758 -11.25972 -10.91928 -10.67337 -9.63834 -9.25415 -8.00341 -5.33763 1.39100 1.44495 1.49106 1.51990 1.89072 2.38162 2.51313 2.67734 3.06478 3.10592 3.24794 3.31354 3.55694 3.58613 3.76453 3.84476 3.99464 4.03132 4.11533 4.25036 4.27034 4.34495 4.40317 4.45822 4.55221 4.60926 4.65223 4.73232 4.74471 4.76495 4.82787 4.85388 4.88970 4.93499 4.99155 5.06739 5.16665 5.19382 5.22240 5.25043 5.31993 5.51927 5.62132 5.78346 6.23477 6.36168 7.07418 7.11387 7.87236 8.07873 9.21611 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.014313 B = 0.003432 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.843228 B = 8157.527496 C = 8971.909950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 H 0.089 0.911 4 C 0.120 3.880 5 N -0.596 5.596 6 C 0.537 3.463 7 O -0.574 6.574 8 C -0.096 4.096 9 C -0.143 4.143 10 C -0.150 4.150 11 C 0.253 3.747 12 F -0.178 7.178 13 F -0.200 7.200 14 C -0.135 4.135 15 C 0.100 3.900 16 C -0.130 4.130 17 C -0.083 4.083 18 H 0.077 0.923 19 C 0.161 3.839 20 N -0.754 5.754 21 C -0.235 4.235 22 H 0.050 0.950 23 C -0.067 4.067 24 N -0.988 5.988 25 Si 0.957 3.043 26 H -0.273 1.273 27 H -0.300 1.300 28 H -0.245 1.245 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.122 0.878 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.023 0.977 46 H 0.016 0.984 47 H 0.368 0.632 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.974 -11.750 23.907 26.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 H 0.107 0.893 4 C -0.002 4.002 5 N -0.327 5.327 6 C 0.325 3.675 7 O -0.454 6.454 8 C -0.099 4.099 9 C -0.199 4.199 10 C -0.188 4.188 11 C 0.217 3.783 12 F -0.159 7.159 13 F -0.181 7.181 14 C -0.174 4.174 15 C -0.022 4.022 16 C -0.168 4.168 17 C -0.102 4.102 18 H 0.095 0.905 19 C 0.035 3.965 20 N -0.400 5.400 21 C -0.367 4.367 22 H 0.068 0.932 23 C -0.258 4.258 24 N -0.638 5.638 25 Si 0.784 3.216 26 H -0.199 1.199 27 H -0.227 1.227 28 H -0.169 1.169 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.106 0.894 42 H 0.127 0.873 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.041 0.959 46 H 0.034 0.966 47 H 0.202 0.798 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.209 -11.301 24.307 26.833 hybrid contribution 0.207 -0.404 -0.812 0.930 sum -1.002 -11.705 23.495 26.269 Atomic orbital electron populations 1.21836 0.95099 1.01732 1.01362 1.21387 0.96368 0.99852 0.93341 0.89260 1.21664 1.00334 0.80083 0.98150 1.48050 1.54919 1.11590 1.18152 1.20256 0.76786 0.87965 0.82445 1.90685 1.58631 1.66043 1.29994 1.21812 0.96544 0.93664 0.97930 1.21958 0.95819 0.97749 1.04415 1.24343 0.95853 1.00218 0.98423 1.22101 0.75335 0.79235 1.01610 1.92994 1.89015 1.36856 1.96996 1.93005 1.32200 1.95594 1.97256 1.24015 0.95474 1.00887 0.96983 1.22202 1.01763 0.95640 0.82596 1.22037 1.01702 0.95203 0.97885 1.21309 1.00528 0.95190 0.93125 0.90463 1.20834 0.95764 0.94830 0.85105 1.42678 1.57546 1.37729 1.02057 1.19025 1.22582 1.10807 0.84238 0.93193 1.25566 1.02721 1.02960 0.94516 1.69902 1.50431 1.45370 0.98129 0.85382 0.78783 0.79543 0.77941 1.19929 1.22702 1.16927 0.92694 0.93026 0.92736 0.89820 0.89982 0.90689 0.89405 0.89503 0.86714 0.85983 0.86997 0.86941 0.89358 0.87259 0.90934 0.91170 0.95855 0.96595 0.79836 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.38 71.98 0.60 -2.49 16 2 C -0.09 -1.83 2.72 -10.72 -0.03 -1.86 16 3 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 4 C 0.12 2.20 5.81 86.36 0.50 2.71 16 5 N -0.60 -10.37 2.41 -818.90 -1.98 -12.34 16 6 C 0.54 10.48 6.68 87.66 0.59 11.07 16 7 O -0.57 -15.29 15.64 -3.03 -0.05 -15.34 16 8 C -0.10 -1.38 0.70 -52.40 -0.04 -1.41 16 9 C -0.14 -1.49 8.59 71.98 0.62 -0.87 16 10 C -0.15 -2.07 5.78 31.18 0.18 -1.89 16 11 C 0.25 4.11 3.27 31.18 0.10 4.21 16 12 F -0.18 -3.01 15.49 44.97 0.70 -2.31 16 13 F -0.20 -4.11 17.41 44.97 0.78 -3.33 16 14 C -0.14 -2.04 6.68 31.12 0.21 -1.83 16 15 C 0.10 1.47 4.95 86.36 0.43 1.90 16 16 C -0.13 -2.72 4.93 30.78 0.15 -2.56 16 17 C -0.08 -1.99 1.96 -10.66 -0.02 -2.02 16 18 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 19 C 0.16 5.59 5.19 86.38 0.45 6.04 16 20 N -0.75 -33.01 5.12 -343.44 -1.76 -34.77 16 21 C -0.24 -13.16 10.47 84.03 0.88 -12.28 16 22 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 23 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 24 N -0.99 -62.80 13.97 21.65 0.30 -62.50 16 25 Si 0.96 43.32 27.73 68.60 1.90 45.22 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 28 H -0.25 -9.66 6.52 99.48 0.65 -9.01 16 29 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.05 1.24 6.59 -2.39 -0.02 1.23 16 31 H 0.05 1.17 5.97 -2.38 -0.01 1.15 16 32 H 0.08 1.73 7.03 -2.38 -0.02 1.72 16 33 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.09 0.85 6.17 -2.39 -0.01 0.83 16 36 H 0.09 0.73 5.69 -2.39 -0.01 0.72 16 37 H 0.11 1.69 8.09 -2.39 -0.02 1.67 16 38 H 0.12 1.30 7.22 -2.39 -0.02 1.28 16 39 H 0.11 1.40 8.10 -2.39 -0.02 1.38 16 40 H 0.11 1.93 7.76 -2.39 -0.02 1.91 16 41 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.11 1.21 3.29 -2.39 -0.01 1.21 16 43 H 0.07 1.70 7.16 -2.39 -0.02 1.68 16 44 H 0.07 1.52 6.34 -2.38 -0.02 1.50 16 45 H 0.02 0.86 6.74 -2.39 -0.02 0.84 16 46 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.37 14.89 4.71 -92.71 -0.44 14.45 16 48 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -71.14 364.35 5.48 -65.66 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.49 Total: 24.37 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 5.09 Total: -4.67 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -3.43 Total: -109.61 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.05 Total: -15.34 kcal Atomic # 9 Polarization: -7.12 SS G_CDS: 1.48 Total: -5.64 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.90 Total: 45.22 kcal Total: -71.14 5.48 -65.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185471170.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.373 kcal (2) G-P(sol) polarization free energy of solvation -71.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.21 seconds