Wall clock time and date at job start Tue Mar 31 2020 17:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.50125 * 2 1 4 4 C 1.53190 * 109.52268 * 239.91634 * 2 1 3 5 5 N 1.46930 * 108.77915 * 294.67180 * 4 2 1 6 6 C 1.34770 * 120.63368 * 126.37017 * 5 4 2 7 7 O 1.21285 * 120.00124 * 175.73249 * 6 5 4 8 8 C 1.50703 * 120.00068 * 355.72932 * 6 5 4 9 9 C 1.52996 * 112.85040 * 66.53230 * 8 6 5 10 10 C 1.53788 * 113.61315 * 295.33529 * 8 6 5 11 11 C 1.53949 * 87.01783 * 220.04613 * 10 8 6 12 12 F 1.39899 * 113.54067 * 270.81085 * 11 10 8 13 13 F 1.39901 * 113.66165 * 139.93540 * 11 10 8 14 14 C 1.53779 * 113.61302 * 197.73141 * 8 6 5 15 15 C 1.46930 * 118.73341 * 306.39324 * 5 4 2 16 16 C 1.53182 * 108.77777 * 53.60584 * 15 5 4 17 17 C 1.53039 * 109.31724 * 305.36286 * 16 15 5 18 18 H 1.09004 * 109.44852 * 301.35673 * 17 16 15 19 19 C 1.52991 * 109.46519 * 181.38802 * 17 16 15 20 20 N 1.46500 * 109.47268 * 64.93242 * 19 17 16 21 21 C 1.36940 * 119.99868 * 180.28121 * 20 19 17 22 22 H 1.07993 * 120.00028 * 359.72040 * 21 20 19 23 23 C 1.38816 * 119.99606 * 179.72729 * 21 20 19 24 24 N 1.31614 * 120.00262 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99526 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47412 * 59.99936 * 25 23 21 27 27 H 1.48505 * 109.47072 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47274 * 299.99350 * 25 23 21 29 29 H 1.09006 * 109.47018 * 299.93741 * 1 2 3 30 30 H 1.09001 * 109.46930 * 59.93364 * 1 2 3 31 31 H 1.08999 * 109.47600 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.58879 * 54.45654 * 4 2 1 33 33 H 1.09003 * 109.58927 * 174.73864 * 4 2 1 34 34 H 1.08995 * 109.47169 * 63.46469 * 9 8 6 35 35 H 1.08994 * 109.47183 * 183.46750 * 9 8 6 36 36 H 1.09004 * 109.47097 * 303.46357 * 9 8 6 37 37 H 1.09003 * 113.61321 * 334.57145 * 10 8 6 38 38 H 1.09006 * 113.61249 * 105.46852 * 10 8 6 39 39 H 1.09002 * 113.61335 * 254.52617 * 14 8 6 40 40 H 1.08992 * 113.62070 * 25.43329 * 14 8 6 41 41 H 1.09002 * 109.58220 * 173.40091 * 15 5 4 42 42 H 1.09004 * 109.58431 * 293.66989 * 15 5 4 43 43 H 1.09004 * 109.49848 * 185.41529 * 16 15 5 44 44 H 1.09002 * 109.49795 * 65.31632 * 16 15 5 45 45 H 1.09010 * 109.47280 * 304.93283 * 19 17 16 46 46 H 1.08999 * 109.47557 * 184.93189 * 19 17 16 47 47 H 0.96996 * 120.00115 * 359.97438 * 20 19 17 48 48 H 0.97001 * 120.00218 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0419 -0.7237 -1.2493 5 7 1.6527 -2.1383 -1.1694 6 6 0.9757 -2.7223 -2.1778 7 8 0.7278 -3.9088 -2.1346 8 6 0.5267 -1.9012 -3.3590 9 6 1.6949 -1.3749 -4.1952 10 6 -0.5099 -0.8230 -3.0013 11 6 -1.2219 -1.1852 -4.3174 12 9 -0.7682 -0.4510 -5.4185 13 9 -2.6169 -1.2055 -4.2139 14 6 -0.5747 -2.5748 -4.1944 15 6 2.0151 -2.9038 0.0312 16 6 1.5035 -2.1557 1.2662 17 6 2.0407 -0.7228 1.2486 18 1 3.1305 -0.7438 1.2357 19 6 1.5601 0.0172 2.4984 20 7 2.1461 -0.6033 3.6891 21 6 1.8525 -0.1109 4.9326 22 1 1.1925 0.7377 5.0354 23 6 2.4033 -0.7025 6.0612 24 7 3.2073 -1.7369 5.9360 25 14 2.0033 -0.0303 7.7575 26 1 0.5386 -0.1104 7.9891 27 1 2.7114 -0.8323 8.7874 28 1 2.4416 1.3859 7.8448 29 1 -0.3633 0.5129 0.8906 30 1 -0.3633 0.5149 -0.8894 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6014 -0.2734 -2.1388 33 1 3.1279 -0.6436 -1.2989 34 1 2.2403 -2.2144 -4.6263 35 1 1.3125 -0.7408 -4.9950 36 1 2.3641 -0.7946 -3.5599 37 1 -1.0932 -1.0565 -2.1106 38 1 -0.1019 0.1878 -2.9883 39 1 -0.2190 -2.9762 -5.1433 40 1 -1.1759 -3.2880 -3.6307 41 1 1.5570 -3.8919 -0.0134 42 1 3.0990 -3.0059 0.0861 43 1 1.8486 -2.6625 2.1674 44 1 0.4138 -2.1358 1.2540 45 1 0.4730 -0.0378 2.5577 46 1 1.8685 1.0612 2.4437 47 1 2.7385 -1.3658 3.5968 48 1 3.5919 -2.1506 6.7246 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185471171.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:40 Heat of formation + Delta-G solvation = -103.385620 kcal Electronic energy + Delta-G solvation = -30325.356423 eV Core-core repulsion = 26051.905079 eV Total energy + Delta-G solvation = -4273.451344 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.19088 -47.50236 -41.18646 -38.77952 -37.40950 -35.05251 -33.25719 -32.00117 -30.69125 -29.57168 -27.25923 -26.96501 -26.63479 -24.84623 -23.57855 -22.77878 -21.72577 -20.92087 -19.37397 -18.63468 -18.04165 -17.17897 -16.95578 -16.89803 -16.31800 -15.62917 -15.46980 -15.10205 -14.69560 -14.51549 -14.40172 -14.14347 -14.08778 -14.00897 -13.79008 -13.65406 -13.38894 -13.01006 -12.81922 -12.63381 -12.49585 -12.30194 -12.20015 -12.16008 -11.76404 -11.60971 -11.46422 -11.42859 -11.08891 -10.96727 -10.81088 -10.77286 -10.40707 -10.27582 -10.12407 -9.99443 -9.80949 -9.62120 -8.87299 -8.66985 -6.92699 -5.78098 -3.06352 2.38482 2.76281 3.07383 3.35872 3.42820 3.47401 3.48257 3.74909 3.78921 3.97471 4.33620 4.54802 4.62422 4.66639 4.82709 4.85689 4.97358 5.02575 5.08175 5.17837 5.19752 5.25230 5.27630 5.39020 5.39636 5.52597 5.53658 5.58490 5.59491 5.63427 5.73479 5.82490 5.85483 5.96605 6.04782 6.17033 6.22146 6.32003 6.33885 6.47005 6.66853 6.77709 6.89704 7.27317 7.68029 7.98864 8.41225 9.52261 10.10551 10.44739 11.44760 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.024291 B = 0.002700 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.416976 B =10368.903888 C =10757.563106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.099 4.099 3 H 0.083 0.917 4 C 0.102 3.898 5 N -0.597 5.597 6 C 0.535 3.465 7 O -0.539 6.539 8 C -0.101 4.101 9 C -0.145 4.145 10 C -0.154 4.154 11 C 0.255 3.745 12 F -0.177 7.177 13 F -0.187 7.187 14 C -0.137 4.137 15 C 0.110 3.890 16 C -0.126 4.126 17 C -0.089 4.089 18 H 0.072 0.928 19 C 0.159 3.841 20 N -0.732 5.732 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.121 0.879 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.122 0.878 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.021 0.979 46 H 0.017 0.983 47 H 0.383 0.617 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.600 2.101 -23.837 24.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.119 4.119 3 H 0.101 0.899 4 C -0.021 4.021 5 N -0.330 5.330 6 C 0.322 3.678 7 O -0.416 6.416 8 C -0.104 4.104 9 C -0.202 4.202 10 C -0.192 4.192 11 C 0.219 3.781 12 F -0.157 7.157 13 F -0.168 7.168 14 C -0.175 4.175 15 C -0.011 4.011 16 C -0.164 4.164 17 C -0.108 4.108 18 H 0.090 0.910 19 C 0.031 3.969 20 N -0.376 5.376 21 C -0.371 4.371 22 H 0.086 0.914 23 C -0.209 4.209 24 N -0.583 5.583 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.139 0.861 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.140 0.860 41 H 0.108 0.892 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.038 0.962 46 H 0.034 0.966 47 H 0.217 0.783 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.807 1.577 -23.688 24.222 hybrid contribution -0.055 0.315 0.948 1.001 sum -4.862 1.892 -22.739 23.330 Atomic orbital electron populations 1.22063 0.95078 1.02075 1.01877 1.21481 0.96546 0.99549 0.94326 0.89854 1.22128 1.00183 0.80542 0.99255 1.48031 1.55227 1.11616 1.18086 1.19891 0.77573 0.87436 0.82931 1.90707 1.56530 1.15314 1.79069 1.21801 0.96115 0.96768 0.95763 1.21945 0.96031 1.02255 0.99977 1.24483 0.96655 1.01062 0.96983 1.22017 0.75674 0.94488 0.85953 1.92992 1.88040 1.78916 1.55792 1.93029 1.30642 1.96986 1.96132 1.24021 0.96055 0.94920 1.02500 1.21751 1.00197 0.95908 0.83278 1.21965 1.01303 0.95804 0.97325 1.21308 1.00304 0.94781 0.94367 0.91003 1.20704 0.95874 0.94577 0.85710 1.42371 1.56745 1.37701 1.00806 1.19174 1.23231 1.10875 0.83830 0.91352 1.24723 1.00075 0.98323 0.97807 1.69637 1.35719 1.24216 1.28686 0.86281 0.77677 0.78030 0.84271 1.21298 1.21693 1.21304 0.91575 0.93120 0.92340 0.89268 0.90995 0.90979 0.90112 0.90473 0.86092 0.87654 0.88170 0.85984 0.89225 0.91338 0.89401 0.91457 0.96159 0.96563 0.78283 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 7.23 37.16 0.27 -1.33 16 2 C -0.10 -1.05 2.72 -90.50 -0.25 -1.30 16 3 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.10 0.90 4.38 -3.71 -0.02 0.88 16 5 N -0.60 -6.55 2.41 -172.76 -0.42 -6.97 16 6 C 0.53 6.22 6.69 -10.99 -0.07 6.14 16 7 O -0.54 -8.21 15.60 5.55 0.09 -8.12 16 8 C -0.10 -0.85 0.70 -154.85 -0.11 -0.96 16 9 C -0.15 -0.97 8.62 37.16 0.32 -0.65 16 10 C -0.15 -1.17 4.38 -25.83 -0.11 -1.29 16 11 C 0.26 2.20 3.27 -25.83 -0.08 2.12 16 12 F -0.18 -1.59 15.48 2.25 0.03 -1.55 16 13 F -0.19 -1.95 17.41 2.25 0.04 -1.91 16 14 C -0.14 -1.16 6.69 -25.92 -0.17 -1.33 16 15 C 0.11 1.41 6.42 -3.71 -0.02 1.38 16 16 C -0.13 -1.82 4.91 -26.62 -0.13 -1.96 16 17 C -0.09 -1.27 1.96 -90.58 -0.18 -1.44 16 18 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 19 C 0.16 2.98 5.19 -4.05 -0.02 2.96 16 20 N -0.73 -17.83 5.32 -59.91 -0.32 -18.15 16 21 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 22 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 25 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 29 H 0.07 0.78 6.58 -51.93 -0.34 0.43 16 30 H 0.05 0.41 6.19 -51.93 -0.32 0.09 16 31 H 0.06 0.67 5.64 -51.93 -0.29 0.38 16 32 H 0.09 0.61 3.26 -51.93 -0.17 0.44 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.49 6.14 -51.93 -0.32 0.17 16 36 H 0.08 0.45 5.54 -51.93 -0.29 0.16 16 37 H 0.12 0.99 6.68 -51.93 -0.35 0.64 16 38 H 0.11 0.63 6.76 -51.93 -0.35 0.28 16 39 H 0.10 0.73 8.10 -51.93 -0.42 0.31 16 40 H 0.12 1.14 7.73 -51.93 -0.40 0.74 16 41 H 0.09 1.25 7.03 -51.93 -0.37 0.88 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 1.51 7.15 -51.93 -0.37 1.14 16 44 H 0.07 1.01 6.34 -51.93 -0.33 0.68 16 45 H 0.02 0.39 6.74 -51.92 -0.35 0.04 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.38 9.78 6.84 -40.82 -0.28 9.50 16 48 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 360.51 15.07 5.43 5.43 Total: -1.00 -31.74 360.51 -7.30 -39.03 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.03 Total: 6.16 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -0.83 Total: -4.00 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.01 Total: -52.25 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.09 Total: -8.12 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.07 Total: -3.46 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.74 -7.30 -39.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185471171.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.351 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds