Wall clock time and date at job start Tue Mar 31 2020 17:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.50125 * 2 1 4 4 C 1.53190 * 109.52268 * 239.91634 * 2 1 3 5 5 N 1.46930 * 108.77915 * 294.67180 * 4 2 1 6 6 C 1.34770 * 120.63368 * 126.37017 * 5 4 2 7 7 O 1.21285 * 120.00124 * 175.73249 * 6 5 4 8 8 C 1.50703 * 120.00068 * 355.72932 * 6 5 4 9 9 C 1.52996 * 112.85040 * 66.53230 * 8 6 5 10 10 C 1.53788 * 113.61315 * 295.33529 * 8 6 5 11 11 C 1.53949 * 87.01783 * 220.04613 * 10 8 6 12 12 F 1.39899 * 113.54067 * 270.81085 * 11 10 8 13 13 F 1.39901 * 113.66165 * 139.93540 * 11 10 8 14 14 C 1.53779 * 113.61302 * 197.73141 * 8 6 5 15 15 C 1.46930 * 118.73341 * 306.39324 * 5 4 2 16 16 C 1.53182 * 108.77777 * 53.60584 * 15 5 4 17 17 C 1.53039 * 109.31724 * 305.36286 * 16 15 5 18 18 H 1.09004 * 109.44852 * 301.35673 * 17 16 15 19 19 C 1.52991 * 109.46519 * 181.38802 * 17 16 15 20 20 N 1.46500 * 109.47268 * 64.93242 * 19 17 16 21 21 C 1.36940 * 119.99868 * 180.28121 * 20 19 17 22 22 H 1.07993 * 120.00028 * 359.72040 * 21 20 19 23 23 C 1.38816 * 119.99606 * 179.72729 * 21 20 19 24 24 N 1.31614 * 120.00262 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99526 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47412 * 59.99936 * 25 23 21 27 27 H 1.48505 * 109.47072 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47274 * 299.99350 * 25 23 21 29 29 H 1.09006 * 109.47018 * 299.93741 * 1 2 3 30 30 H 1.09001 * 109.46930 * 59.93364 * 1 2 3 31 31 H 1.08999 * 109.47600 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.58879 * 54.45654 * 4 2 1 33 33 H 1.09003 * 109.58927 * 174.73864 * 4 2 1 34 34 H 1.08995 * 109.47169 * 63.46469 * 9 8 6 35 35 H 1.08994 * 109.47183 * 183.46750 * 9 8 6 36 36 H 1.09004 * 109.47097 * 303.46357 * 9 8 6 37 37 H 1.09003 * 113.61321 * 334.57145 * 10 8 6 38 38 H 1.09006 * 113.61249 * 105.46852 * 10 8 6 39 39 H 1.09002 * 113.61335 * 254.52617 * 14 8 6 40 40 H 1.08992 * 113.62070 * 25.43329 * 14 8 6 41 41 H 1.09002 * 109.58220 * 173.40091 * 15 5 4 42 42 H 1.09004 * 109.58431 * 293.66989 * 15 5 4 43 43 H 1.09004 * 109.49848 * 185.41529 * 16 15 5 44 44 H 1.09002 * 109.49795 * 65.31632 * 16 15 5 45 45 H 1.09010 * 109.47280 * 304.93283 * 19 17 16 46 46 H 1.08999 * 109.47557 * 184.93189 * 19 17 16 47 47 H 0.96996 * 120.00115 * 359.97438 * 20 19 17 48 48 H 0.97001 * 120.00218 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0419 -0.7237 -1.2493 5 7 1.6527 -2.1383 -1.1694 6 6 0.9757 -2.7223 -2.1778 7 8 0.7278 -3.9088 -2.1346 8 6 0.5267 -1.9012 -3.3590 9 6 1.6949 -1.3749 -4.1952 10 6 -0.5099 -0.8230 -3.0013 11 6 -1.2219 -1.1852 -4.3174 12 9 -0.7682 -0.4510 -5.4185 13 9 -2.6169 -1.2055 -4.2139 14 6 -0.5747 -2.5748 -4.1944 15 6 2.0151 -2.9038 0.0312 16 6 1.5035 -2.1557 1.2662 17 6 2.0407 -0.7228 1.2486 18 1 3.1305 -0.7438 1.2357 19 6 1.5601 0.0172 2.4984 20 7 2.1461 -0.6033 3.6891 21 6 1.8525 -0.1109 4.9326 22 1 1.1925 0.7377 5.0354 23 6 2.4033 -0.7025 6.0612 24 7 3.2073 -1.7369 5.9360 25 14 2.0033 -0.0303 7.7575 26 1 0.5386 -0.1104 7.9891 27 1 2.7114 -0.8323 8.7874 28 1 2.4416 1.3859 7.8448 29 1 -0.3633 0.5129 0.8906 30 1 -0.3633 0.5149 -0.8894 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6014 -0.2734 -2.1388 33 1 3.1279 -0.6436 -1.2989 34 1 2.2403 -2.2144 -4.6263 35 1 1.3125 -0.7408 -4.9950 36 1 2.3641 -0.7946 -3.5599 37 1 -1.0932 -1.0565 -2.1106 38 1 -0.1019 0.1878 -2.9883 39 1 -0.2190 -2.9762 -5.1433 40 1 -1.1759 -3.2880 -3.6307 41 1 1.5570 -3.8919 -0.0134 42 1 3.0990 -3.0059 0.0861 43 1 1.8486 -2.6625 2.1674 44 1 0.4138 -2.1358 1.2540 45 1 0.4730 -0.0378 2.5577 46 1 1.8685 1.0612 2.4437 47 1 2.7385 -1.3658 3.5968 48 1 3.5919 -2.1506 6.7246 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185471171.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:39 Heat of formation + Delta-G solvation = -121.974873 kcal Electronic energy + Delta-G solvation = -30326.162513 eV Core-core repulsion = 26051.905079 eV Total energy + Delta-G solvation = -4274.257434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.88933 -48.21801 -42.05530 -39.75949 -38.29870 -36.60123 -34.70144 -33.15922 -32.32787 -30.31983 -28.51580 -27.91710 -27.33112 -25.96453 -25.12364 -23.75980 -23.00938 -21.89630 -20.23954 -19.67774 -19.13879 -18.59951 -17.83291 -17.69374 -17.14984 -16.77233 -16.46479 -16.34805 -15.82345 -15.59852 -15.38664 -15.20248 -15.12393 -15.04209 -14.79509 -14.60789 -14.46397 -14.29482 -13.87636 -13.69175 -13.42693 -13.23023 -13.16542 -12.99286 -12.94423 -12.76340 -12.66914 -12.38753 -12.27627 -12.21505 -12.12049 -11.97499 -11.88513 -11.53133 -11.49674 -11.21493 -11.15736 -10.87997 -10.66354 -9.64066 -8.95775 -7.94192 -5.21751 1.47020 1.49452 1.49701 1.55666 1.88629 2.40080 2.56682 2.69717 3.08510 3.12499 3.27397 3.39431 3.60010 3.71374 3.83555 3.87771 4.02202 4.09654 4.25574 4.28226 4.31687 4.37756 4.42665 4.50174 4.55617 4.62444 4.63107 4.69272 4.77131 4.80290 4.87261 4.88980 4.92769 4.96419 5.01147 5.09658 5.20783 5.24598 5.24986 5.32961 5.34233 5.49086 5.56158 5.65327 6.28730 6.38982 7.07851 7.35119 8.13678 8.35482 9.29142 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.024291 B = 0.002700 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.416976 B =10368.903888 C =10757.563106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 H 0.103 0.897 4 C 0.102 3.898 5 N -0.594 5.594 6 C 0.533 3.467 7 O -0.581 6.581 8 C -0.094 4.094 9 C -0.143 4.143 10 C -0.149 4.149 11 C 0.256 3.744 12 F -0.176 7.176 13 F -0.199 7.199 14 C -0.141 4.141 15 C 0.119 3.881 16 C -0.116 4.116 17 C -0.079 4.079 18 H 0.068 0.932 19 C 0.158 3.842 20 N -0.744 5.744 21 C -0.245 4.245 22 H 0.073 0.927 23 C -0.075 4.075 24 N -0.969 5.969 25 Si 0.970 3.030 26 H -0.280 1.280 27 H -0.296 1.296 28 H -0.277 1.277 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.116 0.884 38 H 0.132 0.868 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.018 0.982 46 H 0.021 0.979 47 H 0.374 0.626 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.596 4.311 -25.678 26.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 H 0.122 0.878 4 C -0.019 4.019 5 N -0.325 5.325 6 C 0.321 3.679 7 O -0.462 6.462 8 C -0.098 4.098 9 C -0.200 4.200 10 C -0.187 4.187 11 C 0.220 3.780 12 F -0.156 7.156 13 F -0.180 7.180 14 C -0.179 4.179 15 C -0.004 4.004 16 C -0.155 4.155 17 C -0.098 4.098 18 H 0.086 0.914 19 C 0.032 3.968 20 N -0.387 5.387 21 C -0.377 4.377 22 H 0.091 0.909 23 C -0.267 4.267 24 N -0.620 5.620 25 Si 0.799 3.201 26 H -0.206 1.206 27 H -0.222 1.222 28 H -0.203 1.203 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.137 0.863 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.134 0.866 38 H 0.150 0.850 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.036 0.964 46 H 0.038 0.962 47 H 0.206 0.794 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.823 3.842 -25.562 26.295 hybrid contribution -0.109 -0.378 1.480 1.531 sum -4.932 3.464 -24.082 24.825 Atomic orbital electron populations 1.22052 0.94874 1.01390 1.02630 1.21472 0.96623 1.00235 0.92874 0.87843 1.22342 1.01450 0.78826 0.99322 1.48059 1.54878 1.12443 1.17163 1.20455 0.76683 0.87185 0.83542 1.90692 1.58033 1.17409 1.80022 1.21803 0.96881 0.96571 0.94518 1.21988 0.95306 1.02512 1.00150 1.24509 0.95958 1.02073 0.96144 1.22034 0.75043 0.94520 0.86415 1.92995 1.87929 1.78843 1.55869 1.93007 1.31746 1.97046 1.96217 1.24036 0.96054 0.94898 1.02921 1.21497 1.00298 0.95188 0.83417 1.21792 1.00672 0.96154 0.96845 1.21207 0.99965 0.94278 0.94318 0.91405 1.20877 0.95358 0.94864 0.85705 1.42603 1.56792 1.37625 1.01719 1.19590 1.22310 1.10500 0.85259 0.90881 1.25521 1.00699 0.99043 1.01460 1.69795 1.37270 1.25748 1.29170 0.85259 0.77501 0.77551 0.79744 1.20614 1.22248 1.20298 0.93164 0.90041 0.93770 0.86347 0.89333 0.91105 0.88954 0.89070 0.86603 0.85014 0.87092 0.87388 0.90835 0.90638 0.92811 0.92258 0.96445 0.96154 0.79389 0.94068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 7.23 71.98 0.52 -2.28 16 2 C -0.09 -1.69 2.72 -10.72 -0.03 -1.72 16 3 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 4 C 0.10 1.44 4.38 86.36 0.38 1.82 16 5 N -0.59 -12.06 2.41 -818.90 -1.98 -14.03 16 6 C 0.53 11.69 6.69 87.66 0.59 12.28 16 7 O -0.58 -17.80 15.60 -3.05 -0.05 -17.85 16 8 C -0.09 -1.36 0.70 -52.40 -0.04 -1.40 16 9 C -0.14 -1.38 8.62 71.98 0.62 -0.76 16 10 C -0.15 -1.81 4.38 31.18 0.14 -1.68 16 11 C 0.26 3.84 3.27 31.18 0.10 3.94 16 12 F -0.18 -2.62 15.48 44.97 0.70 -1.93 16 13 F -0.20 -3.87 17.41 44.97 0.78 -3.09 16 14 C -0.14 -2.18 6.69 31.12 0.21 -1.98 16 15 C 0.12 3.03 6.42 86.36 0.55 3.59 16 16 C -0.12 -3.46 4.91 30.67 0.15 -3.31 16 17 C -0.08 -2.19 1.96 -10.77 -0.02 -2.21 16 18 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 19 C 0.16 5.88 5.19 86.38 0.45 6.33 16 20 N -0.74 -36.87 5.32 -343.46 -1.83 -38.69 16 21 C -0.24 -13.56 9.99 84.03 0.84 -12.72 16 22 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 23 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 24 N -0.97 -59.06 13.06 21.65 0.28 -58.78 16 25 Si 0.97 46.00 29.55 68.60 2.03 48.02 16 26 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 27 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 28 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 29 H 0.05 1.09 6.58 -2.38 -0.02 1.08 16 30 H 0.08 1.00 6.19 -2.39 -0.01 0.98 16 31 H 0.04 0.95 5.64 -2.39 -0.01 0.93 16 32 H 0.12 1.03 3.26 -2.39 -0.01 1.02 16 33 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 0.73 6.14 -2.39 -0.01 0.72 16 36 H 0.09 0.63 5.54 -2.38 -0.01 0.62 16 37 H 0.12 1.61 6.68 -2.39 -0.02 1.59 16 38 H 0.13 0.91 6.76 -2.38 -0.02 0.90 16 39 H 0.11 1.44 8.10 -2.39 -0.02 1.43 16 40 H 0.11 2.01 7.73 -2.39 -0.02 1.99 16 41 H 0.07 2.13 7.03 -2.39 -0.02 2.12 16 42 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 43 H 0.05 1.96 7.15 -2.38 -0.02 1.94 16 44 H 0.06 1.83 6.34 -2.39 -0.02 1.82 16 45 H 0.02 0.67 6.74 -2.38 -0.02 0.66 16 46 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.37 19.69 6.84 -92.71 -0.63 19.06 16 48 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -70.29 360.51 5.23 -65.06 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.36 Total: 25.19 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 4.92 Total: -3.91 kcal Atomic # 7 Polarization: -107.99 SS G_CDS: -3.52 Total: -111.51 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.05 Total: -17.85 kcal Atomic # 9 Polarization: -6.49 SS G_CDS: 1.48 Total: -5.01 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -70.29 5.23 -65.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185471171.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.915 kcal (2) G-P(sol) polarization free energy of solvation -70.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds