Wall clock time and date at job start Tue Mar 31 2020 15:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47043 * 2 1 4 4 H 1.09004 * 109.47169 * 185.72387 * 3 2 1 5 5 C 1.53005 * 109.46958 * 305.72083 * 3 2 1 6 6 C 1.53000 * 109.47113 * 294.01764 * 5 3 2 7 7 F 1.39900 * 109.47002 * 67.04286 * 6 5 3 8 8 F 1.39897 * 109.46669 * 187.03868 * 6 5 3 9 9 C 1.50700 * 109.47382 * 65.72582 * 3 2 1 10 10 O 1.21285 * 119.99375 * 264.12003 * 9 3 2 11 11 N 1.34775 * 120.00319 * 84.12112 * 9 3 2 12 12 C 1.44755 * 117.18211 * 175.11333 * 11 9 3 13 13 C 1.51493 * 111.70179 * 213.73343 * 12 11 9 14 14 C 1.49429 * 114.09281 * 317.18224 * 13 12 11 15 15 H 1.08999 * 107.67635 * 165.90678 * 14 13 12 16 16 C 1.54525 * 112.97717 * 284.23161 * 14 13 12 17 17 C 1.55247 * 100.54335 * 166.31799 * 16 14 13 18 18 N 1.47470 * 105.14541 * 323.75374 * 17 16 14 19 19 C 1.36945 * 125.66189 * 200.99964 * 18 17 16 20 20 H 1.07996 * 119.99866 * 168.47308 * 19 18 17 21 21 C 1.38809 * 120.00073 * 348.46849 * 19 18 17 22 22 N 1.31614 * 120.00223 * 1.09486 * 21 19 18 23 23 Si 1.86799 * 119.99908 * 181.09582 * 21 19 18 24 24 H 1.48500 * 109.47329 * 84.98972 * 23 21 19 25 25 H 1.48500 * 109.47184 * 204.98805 * 23 21 19 26 26 H 1.48501 * 109.47049 * 324.98912 * 23 21 19 27 27 C 1.48530 * 108.53880 * 20.97802 * 18 17 16 28 28 H 1.09003 * 108.75370 * 121.12018 * 27 18 17 29 29 C 1.43779 * 117.18266 * 355.09609 * 11 9 3 30 30 H 1.08993 * 109.47118 * 306.77122 * 1 2 3 31 31 H 1.09001 * 109.46689 * 66.76910 * 1 2 3 32 32 H 1.08999 * 109.47487 * 186.76675 * 1 2 3 33 33 H 1.08998 * 109.47176 * 239.99277 * 2 1 3 34 34 H 1.09001 * 109.46613 * 119.99346 * 2 1 3 35 35 H 1.08998 * 109.46723 * 54.02254 * 5 3 2 36 36 H 1.09003 * 109.47036 * 174.01969 * 5 3 2 37 37 H 1.09000 * 109.47295 * 307.04110 * 6 5 3 38 38 H 1.09001 * 109.02692 * 93.17118 * 12 11 9 39 39 H 1.08993 * 108.97601 * 334.26922 * 12 11 9 40 40 H 1.09000 * 108.55792 * 195.98738 * 13 12 11 41 41 H 1.08998 * 108.43769 * 78.29545 * 13 12 11 42 42 H 1.09002 * 111.19910 * 48.49490 * 16 14 13 43 43 H 1.08993 * 111.23880 * 284.15599 * 16 14 13 44 44 H 1.08991 * 110.32872 * 82.70069 * 17 16 14 45 45 H 1.09005 * 110.32512 * 204.81293 * 17 16 14 46 46 H 0.97002 * 120.00574 * 179.97438 * 22 21 19 47 47 H 1.09000 * 108.06298 * 279.09513 * 29 11 9 48 48 H 1.09003 * 108.06206 * 35.62242 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1252 1.4442 -0.1025 5 6 1.4159 2.2040 -1.1712 6 6 1.9243 1.6175 -2.4897 7 9 1.4316 0.3170 -2.6422 8 9 1.4829 2.4111 -3.5539 9 6 1.6568 2.1108 1.2952 10 8 0.6523 2.7880 1.3540 11 7 2.4302 1.9561 2.3880 12 6 2.0659 2.7109 3.5682 13 6 3.2851 3.1290 4.3643 14 6 4.3187 2.0590 4.5041 15 1 5.2355 2.5289 4.8603 16 6 3.9284 0.9740 5.5328 17 6 4.9684 -0.1272 5.1927 18 7 5.1287 -0.0666 3.7280 19 6 5.6112 -1.0737 2.9352 20 1 5.5188 -1.0068 1.8613 21 6 6.2189 -2.1804 3.5120 22 7 6.3123 -2.2720 4.8217 23 14 6.9043 -3.5397 2.4295 24 1 8.2811 -3.1846 2.0010 25 1 6.9366 -4.8124 3.1939 26 1 6.0401 -3.7027 1.2329 27 6 4.6788 1.2688 3.2585 28 1 5.5081 1.7586 2.7482 29 6 3.5458 1.0554 2.2810 30 1 -0.3633 0.6151 0.8231 31 1 -0.3633 0.4054 -0.9444 32 1 -0.3634 -1.0205 0.1211 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 0.3307 2.1124 -1.1271 36 1 1.6945 3.2561 -1.1102 37 1 3.0140 1.5945 -2.4810 38 1 1.4233 2.0963 4.1988 39 1 1.5174 3.6022 3.2636 40 1 2.9620 3.4316 5.3604 41 1 3.7399 3.9887 3.8723 42 1 2.9109 0.6203 5.3658 43 1 4.0551 1.3340 6.5537 44 1 5.9172 0.0826 5.6863 45 1 4.5948 -1.1064 5.4924 46 1 6.7366 -3.0455 5.2248 47 1 3.1734 0.0393 2.4114 48 1 3.9507 1.1372 1.2723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222877092.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:34 Heat of formation + Delta-G solvation = -115.759295 kcal Electronic energy + Delta-G solvation = -30760.141524 eV Core-core repulsion = 26486.153617 eV Total energy + Delta-G solvation = -4273.987906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.09776 -47.09932 -40.71910 -38.59185 -35.89932 -35.19938 -33.39264 -31.71416 -30.79752 -29.35384 -28.71485 -26.99394 -24.73737 -24.17724 -23.47476 -22.80537 -21.38552 -20.37692 -19.23770 -18.03884 -17.58533 -17.17524 -17.06440 -16.98837 -15.96171 -15.71612 -15.49174 -14.95149 -14.88865 -14.75331 -14.35474 -13.92848 -13.84930 -13.57219 -13.48026 -13.20333 -13.07849 -12.66649 -12.56098 -12.42394 -12.17078 -12.10632 -11.83069 -11.68043 -11.31926 -11.20473 -11.15276 -10.99390 -10.90230 -10.88763 -10.81100 -10.61563 -10.18511 -9.98723 -9.97166 -9.80672 -9.68946 -9.42293 -8.69192 -8.26136 -6.95057 -5.82805 -3.19774 2.70757 3.13780 3.33067 3.38272 3.40250 3.74540 4.10408 4.29490 4.36439 4.42122 4.70194 4.83189 4.90011 4.95621 5.03031 5.10102 5.17420 5.31417 5.37653 5.41440 5.51245 5.52675 5.59278 5.66852 5.68768 5.78121 5.84360 5.87020 5.94158 6.07294 6.09892 6.13933 6.17939 6.21750 6.32698 6.40047 6.50899 6.54181 6.72299 6.85243 6.94163 7.44925 7.50271 7.56602 7.72278 8.15189 8.31191 9.08563 9.68851 10.36552 11.28214 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.010828 B = 0.004499 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.179466 B = 6222.390481 C = 8098.319099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.110 4.110 4 H 0.102 0.898 5 C -0.156 4.156 6 C 0.262 3.738 7 F -0.199 7.199 8 F -0.208 7.208 9 C 0.515 3.485 10 O -0.550 6.550 11 N -0.586 5.586 12 C 0.120 3.880 13 C -0.111 4.111 14 C -0.092 4.092 15 H 0.065 0.935 16 C -0.143 4.143 17 C 0.173 3.827 18 N -0.597 5.597 19 C -0.234 4.234 20 H 0.076 0.924 21 C -0.001 4.001 22 N -0.916 5.916 23 Si 0.909 3.091 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.161 3.839 28 H 0.041 0.959 29 C 0.095 3.905 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.026 0.974 45 H 0.071 0.929 46 H 0.254 0.746 47 H 0.075 0.925 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.554 9.341 -7.180 13.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.131 4.131 4 H 0.120 0.880 5 C -0.194 4.194 6 C 0.209 3.791 7 F -0.181 7.181 8 F -0.190 7.190 9 C 0.303 3.697 10 O -0.428 6.428 11 N -0.317 5.317 12 C -0.003 4.003 13 C -0.150 4.150 14 C -0.111 4.111 15 H 0.084 0.916 16 C -0.181 4.181 17 C 0.048 3.952 18 N -0.322 5.322 19 C -0.362 4.362 20 H 0.094 0.906 21 C -0.198 4.198 22 N -0.562 5.562 23 Si 0.739 3.261 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.053 3.947 28 H 0.059 0.941 29 C -0.030 4.030 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.128 0.872 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.044 0.956 45 H 0.089 0.911 46 H 0.064 0.936 47 H 0.094 0.906 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.916 9.433 -7.069 14.199 hybrid contribution 0.622 -0.858 -0.541 1.190 sum -7.294 8.575 -7.610 13.588 Atomic orbital electron populations 1.21838 0.95233 1.01785 1.02176 1.21717 0.97065 0.93252 1.04456 1.21367 1.02179 0.97148 0.92422 0.88045 1.22552 1.04591 1.01190 0.91062 1.21947 0.98261 0.73912 0.85028 1.92950 1.90210 1.38869 1.96052 1.92977 1.91938 1.74384 1.59664 1.20409 0.83436 0.80697 0.85189 1.90649 1.25653 1.41257 1.85287 1.46790 1.28720 1.44236 1.11927 1.20671 0.96861 0.96335 0.86388 1.20638 0.95563 0.98413 1.00351 1.20605 0.98271 0.95474 0.96749 0.91614 1.23051 1.00568 0.97554 0.96940 1.21498 0.93861 0.96056 0.83793 1.45008 1.74906 1.09059 1.03266 1.18937 1.31117 0.96600 0.89534 0.90600 1.24849 1.00022 0.99074 0.95881 1.69932 1.47997 1.30148 1.08137 0.86195 0.79158 0.81364 0.79368 1.21455 1.21634 1.20588 1.20291 0.93251 0.88509 0.92602 0.94092 1.21682 0.87496 0.93198 1.00629 0.92278 0.92482 0.92613 0.89400 0.90522 0.87924 0.88587 0.87202 0.92548 0.89920 0.90644 0.92242 0.92340 0.92130 0.95589 0.91073 0.93583 0.90641 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.95 37.16 0.33 -1.57 16 2 C -0.13 -1.58 4.99 -26.73 -0.13 -1.71 16 3 C -0.11 -1.31 1.73 -91.77 -0.16 -1.47 16 4 H 0.10 1.09 6.01 -51.93 -0.31 0.78 16 5 C -0.16 -1.66 4.11 -26.73 -0.11 -1.77 16 6 C 0.26 2.56 5.22 37.16 0.19 2.75 16 7 F -0.20 -2.27 13.66 2.25 0.03 -2.24 16 8 F -0.21 -2.34 17.34 2.25 0.04 -2.30 16 9 C 0.51 7.51 5.87 -10.99 -0.06 7.44 16 10 O -0.55 -9.21 14.75 5.55 0.08 -9.13 16 11 N -0.59 -8.71 3.12 -179.22 -0.56 -9.27 16 12 C 0.12 1.67 6.08 -5.74 -0.03 1.63 16 13 C -0.11 -1.43 5.44 -29.25 -0.16 -1.59 16 14 C -0.09 -1.46 2.44 -92.17 -0.23 -1.68 16 15 H 0.07 1.06 8.13 -51.93 -0.42 0.63 16 16 C -0.14 -2.48 6.54 -24.74 -0.16 -2.64 16 17 C 0.17 3.90 5.41 -2.32 -0.01 3.88 16 18 N -0.60 -13.72 2.96 -163.66 -0.48 -14.21 16 19 C -0.23 -5.91 9.64 -15.06 -0.15 -6.06 16 20 H 0.08 1.82 7.83 -52.49 -0.41 1.41 16 21 C 0.00 -0.03 5.48 -17.43 -0.10 -0.12 16 22 N -0.92 -25.49 10.47 55.49 0.58 -24.91 16 23 Si 0.91 20.90 29.55 -169.99 -5.02 15.88 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 C 0.16 2.96 3.43 -68.33 -0.23 2.72 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 C 0.09 1.54 4.77 -6.41 -0.03 1.51 16 30 H 0.06 0.83 6.69 -51.93 -0.35 0.48 16 31 H 0.06 0.67 5.94 -51.93 -0.31 0.36 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 1.02 5.94 -51.93 -0.31 0.71 16 34 H 0.08 1.06 6.64 -51.93 -0.34 0.72 16 35 H 0.10 1.21 6.07 -51.93 -0.32 0.90 16 36 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.11 0.79 8.13 -51.93 -0.42 0.37 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.08 1.14 7.07 -51.93 -0.37 0.77 16 40 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 1.02 8.09 -51.93 -0.42 0.60 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.03 0.64 8.04 -51.93 -0.42 0.23 16 45 H 0.07 1.82 6.87 -51.93 -0.36 1.46 16 46 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 47 H 0.08 1.41 6.51 -51.93 -0.34 1.08 16 48 H 0.06 0.92 5.57 -51.93 -0.29 0.63 16 LS Contribution 362.03 15.07 5.46 5.46 Total: -1.00 -29.04 362.03 -8.39 -37.43 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.47 Total: 1.97 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -1.04 Total: 1.33 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.46 Total: -48.38 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.08 Total: -9.13 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.07 Total: -4.54 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.04 -8.39 -37.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222877092.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.333 kcal (2) G-P(sol) polarization free energy of solvation -29.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds