Wall clock time and date at job start Tue Mar 31 2020 15:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47043 * 2 1 4 4 H 1.09004 * 109.47169 * 185.72387 * 3 2 1 5 5 C 1.53005 * 109.46958 * 305.72083 * 3 2 1 6 6 C 1.53000 * 109.47113 * 294.01764 * 5 3 2 7 7 F 1.39900 * 109.47002 * 67.04286 * 6 5 3 8 8 F 1.39897 * 109.46669 * 187.03868 * 6 5 3 9 9 C 1.50700 * 109.47382 * 65.72582 * 3 2 1 10 10 O 1.21285 * 119.99375 * 264.12003 * 9 3 2 11 11 N 1.34775 * 120.00319 * 84.12112 * 9 3 2 12 12 C 1.44755 * 117.18211 * 175.11333 * 11 9 3 13 13 C 1.51493 * 111.70179 * 213.73343 * 12 11 9 14 14 C 1.49429 * 114.09281 * 317.18224 * 13 12 11 15 15 H 1.08999 * 107.67635 * 165.90678 * 14 13 12 16 16 C 1.54525 * 112.97717 * 284.23161 * 14 13 12 17 17 C 1.55247 * 100.54335 * 166.31799 * 16 14 13 18 18 N 1.47470 * 105.14541 * 323.75374 * 17 16 14 19 19 C 1.36945 * 125.66189 * 200.99964 * 18 17 16 20 20 H 1.07996 * 119.99866 * 168.47308 * 19 18 17 21 21 C 1.38809 * 120.00073 * 348.46849 * 19 18 17 22 22 N 1.31614 * 120.00223 * 1.09486 * 21 19 18 23 23 Si 1.86799 * 119.99908 * 181.09582 * 21 19 18 24 24 H 1.48500 * 109.47329 * 84.98972 * 23 21 19 25 25 H 1.48500 * 109.47184 * 204.98805 * 23 21 19 26 26 H 1.48501 * 109.47049 * 324.98912 * 23 21 19 27 27 C 1.48530 * 108.53880 * 20.97802 * 18 17 16 28 28 H 1.09003 * 108.75370 * 121.12018 * 27 18 17 29 29 C 1.43779 * 117.18266 * 355.09609 * 11 9 3 30 30 H 1.08993 * 109.47118 * 306.77122 * 1 2 3 31 31 H 1.09001 * 109.46689 * 66.76910 * 1 2 3 32 32 H 1.08999 * 109.47487 * 186.76675 * 1 2 3 33 33 H 1.08998 * 109.47176 * 239.99277 * 2 1 3 34 34 H 1.09001 * 109.46613 * 119.99346 * 2 1 3 35 35 H 1.08998 * 109.46723 * 54.02254 * 5 3 2 36 36 H 1.09003 * 109.47036 * 174.01969 * 5 3 2 37 37 H 1.09000 * 109.47295 * 307.04110 * 6 5 3 38 38 H 1.09001 * 109.02692 * 93.17118 * 12 11 9 39 39 H 1.08993 * 108.97601 * 334.26922 * 12 11 9 40 40 H 1.09000 * 108.55792 * 195.98738 * 13 12 11 41 41 H 1.08998 * 108.43769 * 78.29545 * 13 12 11 42 42 H 1.09002 * 111.19910 * 48.49490 * 16 14 13 43 43 H 1.08993 * 111.23880 * 284.15599 * 16 14 13 44 44 H 1.08991 * 110.32872 * 82.70069 * 17 16 14 45 45 H 1.09005 * 110.32512 * 204.81293 * 17 16 14 46 46 H 0.97002 * 120.00574 * 179.97438 * 22 21 19 47 47 H 1.09000 * 108.06298 * 279.09513 * 29 11 9 48 48 H 1.09003 * 108.06206 * 35.62242 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1252 1.4442 -0.1025 5 6 1.4159 2.2040 -1.1712 6 6 1.9243 1.6175 -2.4897 7 9 1.4316 0.3170 -2.6422 8 9 1.4829 2.4111 -3.5539 9 6 1.6568 2.1108 1.2952 10 8 0.6523 2.7880 1.3540 11 7 2.4302 1.9561 2.3880 12 6 2.0659 2.7109 3.5682 13 6 3.2851 3.1290 4.3643 14 6 4.3187 2.0590 4.5041 15 1 5.2355 2.5289 4.8603 16 6 3.9284 0.9740 5.5328 17 6 4.9684 -0.1272 5.1927 18 7 5.1287 -0.0666 3.7280 19 6 5.6112 -1.0737 2.9352 20 1 5.5188 -1.0068 1.8613 21 6 6.2189 -2.1804 3.5120 22 7 6.3123 -2.2720 4.8217 23 14 6.9043 -3.5397 2.4295 24 1 8.2811 -3.1846 2.0010 25 1 6.9366 -4.8124 3.1939 26 1 6.0401 -3.7027 1.2329 27 6 4.6788 1.2688 3.2585 28 1 5.5081 1.7586 2.7482 29 6 3.5458 1.0554 2.2810 30 1 -0.3633 0.6151 0.8231 31 1 -0.3633 0.4054 -0.9444 32 1 -0.3634 -1.0205 0.1211 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 0.3307 2.1124 -1.1271 36 1 1.6945 3.2561 -1.1102 37 1 3.0140 1.5945 -2.4810 38 1 1.4233 2.0963 4.1988 39 1 1.5174 3.6022 3.2636 40 1 2.9620 3.4316 5.3604 41 1 3.7399 3.9887 3.8723 42 1 2.9109 0.6203 5.3658 43 1 4.0551 1.3340 6.5537 44 1 5.9172 0.0826 5.6863 45 1 4.5948 -1.1064 5.4924 46 1 6.7366 -3.0455 5.2248 47 1 3.1734 0.0393 2.4114 48 1 3.9507 1.1372 1.2723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222877092.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:33 Heat of formation + Delta-G solvation = -131.011086 kcal Electronic energy + Delta-G solvation = -30760.802891 eV Core-core repulsion = 26486.153617 eV Total energy + Delta-G solvation = -4274.649274 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.90909 -47.92250 -41.92517 -39.96079 -37.02994 -36.53780 -34.89990 -33.31738 -31.71252 -30.84527 -30.29886 -28.07139 -26.33913 -25.57212 -24.37122 -24.09374 -22.52473 -22.06737 -20.37533 -19.06227 -18.76210 -18.53512 -18.27640 -18.04205 -17.03939 -16.89005 -16.66575 -16.59680 -16.27345 -15.83100 -15.60554 -15.42385 -14.79631 -14.69299 -14.64271 -14.36890 -14.17817 -13.98654 -13.66272 -13.55402 -13.44277 -13.31640 -13.25734 -13.01930 -12.80544 -12.63111 -12.52817 -12.44932 -12.24520 -11.98284 -11.91249 -11.85638 -11.67230 -11.58814 -11.36704 -11.27357 -11.14448 -10.68183 -10.58629 -9.50366 -8.84880 -7.81342 -5.18534 1.50238 1.50498 1.55650 1.58238 2.01601 2.51421 2.90084 3.31331 3.37534 3.42295 3.51295 3.61731 3.68556 3.76507 3.85329 3.96547 4.00396 4.08328 4.15804 4.22700 4.27410 4.38581 4.42556 4.54506 4.58556 4.67429 4.69088 4.74861 4.88857 4.90075 4.92455 4.93813 5.02939 5.10515 5.15143 5.16656 5.18240 5.36583 5.37838 5.51480 5.54789 5.68756 5.73361 5.80994 6.23946 6.35829 7.11553 7.14875 7.79210 8.46311 9.29018 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.010828 B = 0.004499 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.179466 B = 6222.390481 C = 8098.319099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.106 4.106 4 H 0.119 0.881 5 C -0.150 4.150 6 C 0.262 3.738 7 F -0.210 7.210 8 F -0.217 7.217 9 C 0.514 3.486 10 O -0.571 6.571 11 N -0.588 5.588 12 C 0.117 3.883 13 C -0.102 4.102 14 C -0.083 4.083 15 H 0.068 0.932 16 C -0.126 4.126 17 C 0.177 3.823 18 N -0.615 5.615 19 C -0.230 4.230 20 H 0.089 0.911 21 C -0.062 4.062 22 N -0.950 5.950 23 Si 0.968 3.032 24 H -0.287 1.287 25 H -0.302 1.302 26 H -0.265 1.265 27 C 0.156 3.844 28 H 0.043 0.957 29 C 0.112 3.888 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.145 0.855 38 H 0.050 0.950 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.084 0.916 44 H -0.005 1.005 45 H 0.031 0.969 46 H 0.244 0.756 47 H 0.049 0.951 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.777 10.994 -8.696 16.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.127 4.127 4 H 0.137 0.863 5 C -0.188 4.188 6 C 0.209 3.791 7 F -0.191 7.191 8 F -0.198 7.198 9 C 0.303 3.697 10 O -0.451 6.451 11 N -0.318 5.318 12 C -0.005 4.005 13 C -0.140 4.140 14 C -0.102 4.102 15 H 0.086 0.914 16 C -0.165 4.165 17 C 0.052 3.948 18 N -0.341 5.341 19 C -0.359 4.359 20 H 0.106 0.894 21 C -0.255 4.255 22 N -0.599 5.599 23 Si 0.797 3.203 24 H -0.214 1.214 25 H -0.229 1.229 26 H -0.190 1.190 27 C 0.050 3.950 28 H 0.061 0.939 29 C -0.013 4.013 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.162 0.838 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.013 0.987 45 H 0.050 0.950 46 H 0.054 0.946 47 H 0.067 0.933 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.162 11.122 -8.615 16.265 hybrid contribution 0.636 -1.331 -0.061 1.477 sum -7.526 9.791 -8.675 15.092 Atomic orbital electron populations 1.21784 0.95435 1.01650 1.01677 1.21695 0.96855 0.93564 1.04102 1.21379 1.03268 0.96543 0.91522 0.86292 1.22479 1.03662 1.01562 0.91103 1.22192 0.99855 0.73058 0.84028 1.92929 1.90524 1.39626 1.96036 1.92962 1.92207 1.74639 1.60012 1.20807 0.82845 0.80223 0.85779 1.90643 1.26468 1.42287 1.85690 1.46805 1.28360 1.44096 1.12576 1.20772 0.97385 0.96282 0.86110 1.20588 0.94106 0.97430 1.01885 1.20595 0.99517 0.95390 0.94710 0.91355 1.22890 0.98588 0.96135 0.98849 1.21246 0.93780 0.95940 0.83876 1.45260 1.74808 1.10660 1.03366 1.19366 1.29266 0.96837 0.90413 0.89364 1.25598 1.01463 1.01576 0.96894 1.70151 1.49630 1.30412 1.09702 0.85248 0.78565 0.78351 0.78135 1.21392 1.22894 1.18997 1.20508 0.93845 0.86519 0.94145 0.93942 1.21275 0.87093 0.92082 1.00897 0.94174 0.91849 0.92241 0.88208 0.92280 0.89327 0.87765 0.83804 0.93162 0.89373 0.88143 0.90493 0.92396 0.89747 0.98675 0.95049 0.94638 0.93311 0.90057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.95 71.98 0.64 -2.91 16 2 C -0.12 -2.90 4.99 30.59 0.15 -2.74 16 3 C -0.11 -2.29 1.73 -11.54 -0.02 -2.31 16 4 H 0.12 2.15 6.01 -2.39 -0.01 2.13 16 5 C -0.15 -2.84 4.11 30.60 0.13 -2.72 16 6 C 0.26 4.37 5.22 71.98 0.38 4.75 16 7 F -0.21 -4.29 13.66 44.97 0.61 -3.68 16 8 F -0.22 -4.38 17.34 44.97 0.78 -3.60 16 9 C 0.51 14.04 5.87 87.66 0.51 14.55 16 10 O -0.57 -18.24 14.75 -3.05 -0.04 -18.29 16 11 N -0.59 -16.29 3.12 -839.32 -2.62 -18.91 16 12 C 0.12 2.96 6.08 86.21 0.52 3.48 16 13 C -0.10 -2.27 5.44 28.96 0.16 -2.11 16 14 C -0.08 -2.45 2.44 -11.80 -0.03 -2.48 16 15 H 0.07 2.02 8.13 -2.39 -0.02 2.00 16 16 C -0.13 -4.25 6.54 31.88 0.21 -4.04 16 17 C 0.18 8.20 5.41 86.97 0.47 8.67 16 18 N -0.62 -28.43 2.96 -671.71 -1.99 -30.41 16 19 C -0.23 -11.65 9.64 84.03 0.81 -10.84 16 20 H 0.09 4.14 7.83 -2.91 -0.02 4.12 16 21 C -0.06 -3.33 5.48 84.86 0.47 -2.87 16 22 N -0.95 -54.98 10.47 21.65 0.23 -54.75 16 23 Si 0.97 43.42 29.55 68.60 2.03 45.45 16 24 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 25 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 27 C 0.16 5.50 3.43 43.62 0.15 5.65 16 28 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 29 C 0.11 3.43 4.77 86.28 0.41 3.84 16 30 H 0.04 1.10 6.69 -2.39 -0.02 1.09 16 31 H 0.06 1.43 5.94 -2.39 -0.01 1.41 16 32 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.10 2.11 5.94 -2.39 -0.01 2.09 16 34 H 0.06 1.59 6.64 -2.39 -0.02 1.58 16 35 H 0.09 1.96 6.07 -2.39 -0.01 1.94 16 36 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.14 1.48 8.13 -2.39 -0.02 1.46 16 38 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.09 2.19 7.07 -2.39 -0.02 2.17 16 40 H 0.10 1.82 8.09 -2.39 -0.02 1.80 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.06 1.97 8.09 -2.39 -0.02 1.95 16 43 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.00 -0.25 8.04 -2.39 -0.02 -0.27 16 45 H 0.03 1.68 6.87 -2.38 -0.02 1.66 16 46 H 0.24 13.95 8.31 -92.71 -0.77 13.18 16 47 H 0.05 1.80 6.51 -2.39 -0.02 1.78 16 48 H 0.08 2.18 5.57 -2.39 -0.01 2.17 16 Total: -1.00 -64.74 362.03 4.92 -59.82 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.96 Total: 16.46 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 4.96 Total: 7.91 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -4.38 Total: -104.08 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.04 Total: -18.29 kcal Atomic # 9 Polarization: -8.67 SS G_CDS: 1.39 Total: -7.27 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -64.74 4.92 -59.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222877092.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.190 kcal (2) G-P(sol) polarization free energy of solvation -64.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds