Wall clock time and date at job start Tue Mar 31 2020 15:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47076 * 2 1 4 4 H 1.08996 * 109.47162 * 55.55146 * 3 2 1 5 5 C 1.50703 * 109.46745 * 175.55220 * 3 2 1 6 6 H 1.07997 * 119.99885 * 120.00372 * 5 3 2 7 7 C 1.37877 * 119.99803 * 299.99204 * 5 3 2 8 8 N 1.31507 * 120.00336 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47024 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47060 * 120.00155 * 9 7 5 12 12 H 1.48499 * 109.47043 * 240.00531 * 9 7 5 13 13 N 1.46906 * 109.46816 * 295.54767 * 3 2 1 14 14 C 1.46897 * 110.99486 * 152.37024 * 13 3 2 15 15 C 1.53008 * 109.46948 * 89.19340 * 14 13 3 16 16 C 1.53001 * 109.47338 * 59.99769 * 15 14 13 17 17 C 1.53005 * 109.47056 * 59.99910 * 16 15 14 18 18 C 1.47194 * 109.47024 * 60.00017 * 17 16 15 19 19 N 7.85340 * 93.41739 * 334.37028 * 2 1 3 20 20 C 1.50702 * 109.46825 * 180.02562 * 17 16 15 21 21 C 1.38240 * 119.97554 * 119.72660 * 20 17 16 22 22 C 1.38201 * 120.02744 * 179.71984 * 21 20 17 23 23 C 1.38458 * 119.96739 * 0.57674 * 22 21 20 24 24 F 1.35101 * 120.02216 * 179.68345 * 23 22 21 25 25 C 1.38457 * 119.95356 * 359.69580 * 23 22 21 26 26 C 1.38201 * 119.97275 * 0.02562 * 25 23 22 27 27 C 1.53004 * 109.46792 * 300.00103 * 17 16 15 28 28 C 1.52995 * 109.47195 * 209.18830 * 14 13 3 29 29 H 1.09006 * 109.47139 * 57.92135 * 1 2 3 30 30 H 1.08999 * 109.47620 * 177.92188 * 1 2 3 31 31 H 1.09000 * 109.47286 * 297.91927 * 1 2 3 32 32 H 1.09001 * 109.46962 * 239.99797 * 2 1 3 33 33 H 1.09001 * 109.46931 * 119.99987 * 2 1 3 34 34 H 0.96998 * 120.00711 * 180.02562 * 8 7 5 35 35 H 1.00896 * 110.99894 * 28.41647 * 13 3 2 36 36 H 1.09002 * 109.47785 * 329.19464 * 14 13 3 37 37 H 1.09004 * 109.46642 * 179.97438 * 15 14 13 38 38 H 1.09004 * 109.47114 * 299.99236 * 15 14 13 39 39 H 1.09002 * 109.46810 * 300.00453 * 16 15 14 40 40 H 1.08991 * 109.47235 * 179.97438 * 16 15 14 41 41 H 1.08001 * 119.98255 * 359.97438 * 21 20 17 42 42 H 1.07992 * 120.01331 * 180.29776 * 22 21 20 43 43 H 1.08001 * 120.01731 * 180.02562 * 25 23 22 44 44 H 1.08002 * 119.98456 * 180.02562 * 26 25 23 45 45 H 1.08999 * 109.47212 * 299.99459 * 27 17 16 46 46 H 1.09003 * 109.46307 * 180.02562 * 27 17 16 47 47 H 1.09004 * 109.47095 * 60.00211 * 28 14 13 48 48 H 1.09000 * 109.47690 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6130 1.9788 0.8474 5 6 3.5430 1.4438 0.1102 6 1 4.1412 1.8909 -0.6699 7 6 4.1543 0.8745 1.2071 8 7 3.4258 0.3298 2.1569 9 14 6.0173 0.8767 1.3441 10 1 6.6003 1.5465 0.1538 11 1 6.4224 1.6083 2.5711 12 1 6.5100 -0.5223 1.4163 13 7 1.6400 2.1032 -1.2496 14 6 1.5022 3.5530 -1.0577 15 6 2.8475 4.2325 -1.3215 16 6 3.2896 3.9480 -2.7584 17 6 2.2428 4.4941 -3.7316 18 6 2.1047 5.9469 -3.5393 19 7 1.9981 7.0681 -3.3910 20 6 2.6780 4.2133 -5.1468 21 6 1.8855 3.4372 -5.9720 22 6 2.2807 3.1838 -7.2718 23 6 3.4767 3.6977 -7.7437 24 9 3.8672 3.4453 -9.0122 25 6 4.2723 4.4701 -6.9146 26 6 3.8722 4.7269 -5.6169 27 6 0.8976 3.8145 -3.4677 28 6 0.4556 4.0991 -2.0309 29 1 -0.3634 0.5458 -0.8708 30 1 -0.3634 -1.0269 -0.0373 31 1 -0.3634 0.4812 0.9080 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8558 -0.0704 2.9288 35 1 0.7876 1.7039 -1.6130 36 1 1.1873 3.7558 -0.0340 37 1 2.7451 5.3084 -1.1795 38 1 3.5932 3.8436 -0.6281 39 1 3.3917 2.8722 -2.9007 40 1 4.2476 4.4324 -2.9464 41 1 0.9552 3.0323 -5.6019 42 1 1.6592 2.5816 -7.9177 43 1 5.2052 4.8717 -7.2817 44 1 4.4925 5.3298 -4.9702 45 1 0.9998 2.7388 -3.6102 46 1 0.1520 4.2033 -4.1614 47 1 -0.5028 3.6151 -1.8430 48 1 0.3536 5.1750 -1.8888 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254348416.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:06 Heat of formation + Delta-G solvation = -6.397676 kcal Electronic energy + Delta-G solvation = -28906.335334 eV Core-core repulsion = 25067.858928 eV Total energy + Delta-G solvation = -3838.476406 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.03841 -40.55599 -38.33913 -36.44761 -35.09060 -32.97098 -31.72361 -31.61930 -30.47417 -29.83805 -27.75733 -26.17526 -23.99751 -23.39014 -22.75635 -22.02234 -21.62461 -19.77785 -19.35057 -17.91944 -16.82243 -16.39722 -16.32326 -16.02741 -15.72000 -15.04912 -14.93060 -14.41863 -14.15237 -14.02178 -13.78392 -13.74689 -13.42756 -13.30939 -13.14831 -12.78988 -12.68571 -12.41271 -12.34431 -12.01511 -11.88741 -11.74315 -11.62532 -11.46485 -11.26008 -11.08969 -10.91213 -10.85576 -10.62646 -10.48287 -10.17126 -10.06123 -9.77493 -9.62374 -9.41862 -9.27114 -9.00251 -8.74251 -8.34687 -7.26071 -5.97615 -4.00619 0.91832 1.06195 2.82816 2.85413 3.29945 3.35109 3.39084 3.42070 4.02776 4.09450 4.40519 4.43920 4.52074 4.70863 4.81874 4.93738 5.08769 5.14921 5.20612 5.32280 5.40593 5.49180 5.60355 5.69848 5.71970 5.73057 5.80626 5.91385 5.94369 5.99714 6.09603 6.12509 6.14144 6.21879 6.27491 6.35889 6.38539 6.55218 6.56310 6.69106 6.77169 6.83903 6.96029 7.06591 7.17870 7.48732 7.63149 7.77535 7.92593 8.30269 8.39615 8.74338 9.07191 9.64201 11.07859 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011808 B = 0.003621 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.649442 B = 7731.631847 C = 8196.255830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.487 4.487 6 H 0.066 0.934 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.286 1.286 13 N -0.676 5.676 14 C 0.096 3.904 15 C -0.110 4.110 16 C -0.091 4.091 17 C 0.084 3.916 18 C 0.229 3.771 19 N -0.443 5.443 20 C -0.080 4.080 21 C -0.077 4.077 22 C -0.152 4.152 23 C 0.096 3.904 24 F -0.142 7.142 25 C -0.152 4.152 26 C -0.078 4.078 27 C -0.101 4.101 28 C -0.128 4.128 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.098 0.902 34 H 0.258 0.742 35 H 0.318 0.682 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.057 0.943 41 H 0.144 0.856 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.132 0.868 45 H 0.100 0.900 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.333 4.764 -15.069 16.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.111 3.889 4 H 0.020 0.980 5 C -0.526 4.526 6 H 0.084 0.916 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.309 5.309 14 C -0.014 4.014 15 C -0.148 4.148 16 C -0.129 4.129 17 C 0.081 3.919 18 C -0.089 4.089 19 N -0.118 5.118 20 C -0.081 4.081 21 C -0.095 4.095 22 C -0.171 4.171 23 C 0.076 3.924 24 F -0.121 7.121 25 C -0.170 4.170 26 C -0.096 4.096 27 C -0.139 4.139 28 C -0.166 4.166 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.116 0.884 34 H 0.068 0.932 35 H 0.136 0.864 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.113 0.887 39 H 0.127 0.873 40 H 0.076 0.924 41 H 0.161 0.839 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.150 0.850 45 H 0.118 0.882 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.811 6.426 -14.952 16.715 hybrid contribution 0.361 -0.450 0.464 0.740 sum -3.450 5.977 -14.488 16.047 Atomic orbital electron populations 1.21887 0.99763 0.99447 0.99648 1.21789 0.91045 1.00630 1.03057 1.19234 0.95409 0.89772 0.84447 0.98016 1.21278 0.91101 1.35669 1.04518 0.91558 1.24954 0.97788 0.95816 0.96006 1.69869 1.34594 1.39367 1.09800 0.86593 0.86287 0.77583 0.77843 1.19730 1.21414 1.21272 1.60780 1.36273 1.00835 1.33015 1.21356 0.93530 0.90342 0.96179 1.21638 0.98999 0.97677 0.96493 1.21582 0.94384 1.03807 0.93116 1.17271 0.99704 0.81989 0.92975 1.28976 0.92849 0.94584 0.92461 1.81164 1.08839 1.12671 1.09121 1.19590 0.95267 0.99029 0.94218 1.21075 0.99850 0.96549 0.92013 1.21145 0.96123 1.02575 0.97211 1.17767 0.95193 0.99722 0.79678 1.91494 1.90973 1.92692 1.36954 1.21093 1.00872 1.00735 0.94332 1.20910 0.95627 0.98414 0.94684 1.21657 0.92936 1.02196 0.97154 1.21870 0.99014 1.00804 0.94870 0.94581 0.94552 0.94011 0.94052 0.88408 0.93242 0.86392 0.94124 0.94044 0.88735 0.87334 0.92389 0.83873 0.84555 0.84717 0.85015 0.88207 0.91736 0.91589 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.78 37.16 0.36 -2.26 16 2 C -0.13 -2.71 5.35 -26.73 -0.14 -2.85 16 3 C 0.22 4.81 2.04 -68.86 -0.14 4.67 16 4 H 0.00 0.06 7.33 -51.93 -0.38 -0.32 16 5 C -0.49 -12.01 7.53 -34.44 -0.26 -12.27 16 6 H 0.07 1.63 6.82 -52.49 -0.36 1.27 16 7 C 0.05 1.41 5.29 -17.82 -0.09 1.32 16 8 N -0.90 -24.28 11.29 55.43 0.63 -23.65 16 9 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.68 -11.69 4.75 -100.95 -0.48 -12.17 16 14 C 0.10 1.53 2.84 -67.71 -0.19 1.34 16 15 C -0.11 -1.75 5.05 -26.73 -0.13 -1.89 16 16 C -0.09 -1.23 4.36 -26.73 -0.12 -1.35 16 17 C 0.08 0.98 0.56 -158.44 -0.09 0.89 16 18 C 0.23 3.11 10.97 -20.76 -0.23 2.88 16 19 N -0.44 -6.92 18.54 42.15 0.78 -6.14 16 20 C -0.08 -0.85 4.74 -104.62 -0.50 -1.35 16 21 C -0.08 -0.72 8.97 -39.59 -0.36 -1.08 16 22 C -0.15 -1.42 10.03 -39.51 -0.40 -1.82 16 23 C 0.10 1.01 7.30 -39.42 -0.29 0.72 16 24 F -0.14 -1.59 17.27 2.25 0.04 -1.56 16 25 C -0.15 -1.53 10.03 -39.51 -0.40 -1.92 16 26 C -0.08 -0.82 8.80 -39.59 -0.35 -1.17 16 27 C -0.10 -1.07 3.20 -26.73 -0.09 -1.16 16 28 C -0.13 -1.59 5.05 -26.73 -0.13 -1.72 16 29 H 0.04 0.55 6.35 -51.93 -0.33 0.22 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.10 2.43 5.96 -51.93 -0.31 2.12 16 34 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.32 4.98 5.62 -39.29 -0.22 4.75 16 36 H 0.04 0.74 7.32 -51.93 -0.38 0.36 16 37 H 0.04 0.64 7.22 -51.93 -0.38 0.27 16 38 H 0.09 1.79 6.11 -51.93 -0.32 1.47 16 39 H 0.11 1.63 7.60 -51.93 -0.39 1.23 16 40 H 0.06 0.74 7.39 -51.93 -0.38 0.36 16 41 H 0.14 1.06 5.89 -52.49 -0.31 0.75 16 42 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 43 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 44 H 0.13 1.29 7.56 -52.49 -0.40 0.90 16 45 H 0.10 1.03 6.72 -51.93 -0.35 0.68 16 46 H 0.06 0.58 7.52 -51.93 -0.39 0.18 16 47 H 0.07 0.76 8.12 -51.93 -0.42 0.33 16 48 H 0.06 0.76 7.22 -51.93 -0.38 0.38 16 LS Contribution 374.22 15.07 5.64 5.64 Total: -1.00 -27.30 374.22 -8.89 -36.18 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.94 Total: 5.28 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -3.53 Total: -19.02 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.93 Total: -41.96 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -27.30 -8.89 -36.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254348416.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.787 kcal (2) G-P(sol) polarization free energy of solvation -27.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds