Wall clock time and date at job start Tue Mar 31 2020 15:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47076 * 2 1 4 4 H 1.08996 * 109.47162 * 55.55146 * 3 2 1 5 5 C 1.50703 * 109.46745 * 175.55220 * 3 2 1 6 6 H 1.07997 * 119.99885 * 120.00372 * 5 3 2 7 7 C 1.37877 * 119.99803 * 299.99204 * 5 3 2 8 8 N 1.31507 * 120.00336 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47024 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47060 * 120.00155 * 9 7 5 12 12 H 1.48499 * 109.47043 * 240.00531 * 9 7 5 13 13 N 1.46906 * 109.46816 * 295.54767 * 3 2 1 14 14 C 1.46897 * 110.99486 * 152.37024 * 13 3 2 15 15 C 1.53008 * 109.46948 * 89.19340 * 14 13 3 16 16 C 1.53001 * 109.47338 * 59.99769 * 15 14 13 17 17 C 1.53005 * 109.47056 * 59.99910 * 16 15 14 18 18 C 1.47194 * 109.47024 * 60.00017 * 17 16 15 19 19 N 7.85340 * 93.41739 * 334.37028 * 2 1 3 20 20 C 1.50702 * 109.46825 * 180.02562 * 17 16 15 21 21 C 1.38240 * 119.97554 * 119.72660 * 20 17 16 22 22 C 1.38201 * 120.02744 * 179.71984 * 21 20 17 23 23 C 1.38458 * 119.96739 * 0.57674 * 22 21 20 24 24 F 1.35101 * 120.02216 * 179.68345 * 23 22 21 25 25 C 1.38457 * 119.95356 * 359.69580 * 23 22 21 26 26 C 1.38201 * 119.97275 * 0.02562 * 25 23 22 27 27 C 1.53004 * 109.46792 * 300.00103 * 17 16 15 28 28 C 1.52995 * 109.47195 * 209.18830 * 14 13 3 29 29 H 1.09006 * 109.47139 * 57.92135 * 1 2 3 30 30 H 1.08999 * 109.47620 * 177.92188 * 1 2 3 31 31 H 1.09000 * 109.47286 * 297.91927 * 1 2 3 32 32 H 1.09001 * 109.46962 * 239.99797 * 2 1 3 33 33 H 1.09001 * 109.46931 * 119.99987 * 2 1 3 34 34 H 0.96998 * 120.00711 * 180.02562 * 8 7 5 35 35 H 1.00896 * 110.99894 * 28.41647 * 13 3 2 36 36 H 1.09002 * 109.47785 * 329.19464 * 14 13 3 37 37 H 1.09004 * 109.46642 * 179.97438 * 15 14 13 38 38 H 1.09004 * 109.47114 * 299.99236 * 15 14 13 39 39 H 1.09002 * 109.46810 * 300.00453 * 16 15 14 40 40 H 1.08991 * 109.47235 * 179.97438 * 16 15 14 41 41 H 1.08001 * 119.98255 * 359.97438 * 21 20 17 42 42 H 1.07992 * 120.01331 * 180.29776 * 22 21 20 43 43 H 1.08001 * 120.01731 * 180.02562 * 25 23 22 44 44 H 1.08002 * 119.98456 * 180.02562 * 26 25 23 45 45 H 1.08999 * 109.47212 * 299.99459 * 27 17 16 46 46 H 1.09003 * 109.46307 * 180.02562 * 27 17 16 47 47 H 1.09004 * 109.47095 * 60.00211 * 28 14 13 48 48 H 1.09000 * 109.47690 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6130 1.9788 0.8474 5 6 3.5430 1.4438 0.1102 6 1 4.1412 1.8909 -0.6699 7 6 4.1543 0.8745 1.2071 8 7 3.4258 0.3298 2.1569 9 14 6.0173 0.8767 1.3441 10 1 6.6003 1.5465 0.1538 11 1 6.4224 1.6083 2.5711 12 1 6.5100 -0.5223 1.4163 13 7 1.6400 2.1032 -1.2496 14 6 1.5022 3.5530 -1.0577 15 6 2.8475 4.2325 -1.3215 16 6 3.2896 3.9480 -2.7584 17 6 2.2428 4.4941 -3.7316 18 6 2.1047 5.9469 -3.5393 19 7 1.9981 7.0681 -3.3910 20 6 2.6780 4.2133 -5.1468 21 6 1.8855 3.4372 -5.9720 22 6 2.2807 3.1838 -7.2718 23 6 3.4767 3.6977 -7.7437 24 9 3.8672 3.4453 -9.0122 25 6 4.2723 4.4701 -6.9146 26 6 3.8722 4.7269 -5.6169 27 6 0.8976 3.8145 -3.4677 28 6 0.4556 4.0991 -2.0309 29 1 -0.3634 0.5458 -0.8708 30 1 -0.3634 -1.0269 -0.0373 31 1 -0.3634 0.4812 0.9080 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8558 -0.0704 2.9288 35 1 0.7876 1.7039 -1.6130 36 1 1.1873 3.7558 -0.0340 37 1 2.7451 5.3084 -1.1795 38 1 3.5932 3.8436 -0.6281 39 1 3.3917 2.8722 -2.9007 40 1 4.2476 4.4324 -2.9464 41 1 0.9552 3.0323 -5.6019 42 1 1.6592 2.5816 -7.9177 43 1 5.2052 4.8717 -7.2817 44 1 4.4925 5.3298 -4.9702 45 1 0.9998 2.7388 -3.6102 46 1 0.1520 4.2033 -4.1614 47 1 -0.5028 3.6151 -1.8430 48 1 0.3536 5.1750 -1.8888 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254348416.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:05 Heat of formation + Delta-G solvation = -18.682537 kcal Electronic energy + Delta-G solvation = -28906.868046 eV Core-core repulsion = 25067.858928 eV Total energy + Delta-G solvation = -3839.009118 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.84375 -41.52153 -39.35330 -37.77590 -36.43240 -34.38523 -33.36042 -32.46809 -31.47494 -31.05798 -28.97947 -27.84874 -24.93499 -24.56255 -24.28984 -22.97029 -22.50291 -21.33478 -20.72268 -18.70036 -18.28303 -17.79391 -17.22354 -17.00377 -16.67544 -16.52639 -16.16771 -15.76143 -15.33156 -15.20559 -15.09600 -14.53924 -14.47197 -14.43338 -14.30442 -14.09526 -13.90867 -13.71824 -13.43411 -13.26378 -13.06404 -12.94668 -12.87750 -12.78872 -12.74123 -12.45351 -12.38864 -12.06116 -11.90333 -11.76769 -11.73679 -11.49295 -11.38365 -11.06732 -10.84491 -10.68986 -10.30362 -9.99626 -9.55057 -8.83367 -7.95650 -6.03565 0.12987 0.33939 1.43271 1.47956 1.56512 1.76299 1.78087 2.50910 2.54869 3.05739 3.30647 3.33456 3.48868 3.67773 3.81707 3.92832 3.96632 4.03011 4.26216 4.33325 4.40377 4.45691 4.55799 4.58163 4.64067 4.68362 4.69561 4.78828 4.84371 4.97583 5.02616 5.04960 5.12931 5.19584 5.21720 5.24527 5.32829 5.36500 5.37692 5.39088 5.49359 5.54927 5.57027 5.64233 5.76029 5.90604 5.95018 6.08011 6.51460 6.56677 6.67876 7.12300 7.21312 7.64710 9.07614 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011808 B = 0.003621 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.649442 B = 7731.631847 C = 8196.255830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C 0.226 3.774 4 H -0.037 1.037 5 C -0.486 4.486 6 H 0.064 0.936 7 C 0.007 3.993 8 N -0.924 5.924 9 Si 0.940 3.060 10 H -0.265 1.265 11 H -0.293 1.293 12 H -0.287 1.287 13 N -0.662 5.662 14 C 0.096 3.904 15 C -0.107 4.107 16 C -0.084 4.084 17 C 0.094 3.906 18 C 0.246 3.754 19 N -0.481 5.481 20 C -0.089 4.089 21 C -0.072 4.072 22 C -0.149 4.149 23 C 0.081 3.919 24 F -0.149 7.149 25 C -0.157 4.157 26 C -0.089 4.089 27 C -0.100 4.100 28 C -0.119 4.119 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.029 0.971 32 H 0.041 0.959 33 H 0.060 0.940 34 H 0.254 0.746 35 H 0.332 0.668 36 H 0.011 0.989 37 H 0.040 0.960 38 H 0.057 0.943 39 H 0.100 0.900 40 H 0.062 0.938 41 H 0.169 0.831 42 H 0.159 0.841 43 H 0.146 0.854 44 H 0.132 0.868 45 H 0.112 0.888 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.609 4.444 -17.608 19.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C 0.118 3.882 4 H -0.019 1.019 5 C -0.525 4.525 6 H 0.083 0.917 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.768 3.232 10 H -0.189 1.189 11 H -0.219 1.219 12 H -0.213 1.213 13 N -0.295 5.295 14 C -0.014 4.014 15 C -0.145 4.145 16 C -0.122 4.122 17 C 0.091 3.909 18 C -0.071 4.071 19 N -0.156 5.156 20 C -0.090 4.090 21 C -0.090 4.090 22 C -0.168 4.168 23 C 0.062 3.938 24 F -0.128 7.128 25 C -0.176 4.176 26 C -0.107 4.107 27 C -0.138 4.138 28 C -0.157 4.157 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.152 0.848 36 H 0.029 0.971 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.081 0.919 41 H 0.187 0.813 42 H 0.176 0.824 43 H 0.163 0.837 44 H 0.150 0.850 45 H 0.130 0.870 46 H 0.114 0.886 47 H 0.103 0.897 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.089 6.113 -17.514 19.236 hybrid contribution 0.783 -0.310 1.247 1.504 sum -4.306 5.804 -16.268 17.801 Atomic orbital electron populations 1.21760 0.96509 1.00997 1.00423 1.21604 0.93976 0.99347 1.01180 1.18963 0.93887 0.90323 0.85024 1.01918 1.21611 0.92779 1.34202 1.03943 0.91749 1.25589 1.01067 0.96200 0.96191 1.70011 1.35716 1.40625 1.10259 0.85778 0.82549 0.77272 0.77646 1.18917 1.21934 1.21328 1.60610 1.37166 1.01476 1.30241 1.21343 0.94681 0.89478 0.95910 1.21527 0.98176 0.97392 0.97450 1.21456 0.95488 1.03362 0.91922 1.17222 0.99786 0.80681 0.93225 1.29302 0.91729 0.94810 0.91287 1.81184 1.10111 1.13899 1.10397 1.19540 0.95786 1.00080 0.93629 1.21333 1.00372 0.95614 0.91649 1.21419 0.95729 1.02121 0.97507 1.18025 0.95960 1.00258 0.79549 1.91478 1.91129 1.92790 1.37393 1.21235 1.01423 1.00715 0.94187 1.21003 0.95939 0.98762 0.94990 1.21752 0.92790 1.02966 0.96287 1.21782 0.98453 1.00463 0.95016 0.91665 0.92806 0.95136 0.93978 0.92158 0.93689 0.84771 0.97114 0.94087 0.92405 0.88200 0.91912 0.81325 0.82356 0.83657 0.85001 0.86970 0.88631 0.89668 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.64 9.78 71.98 0.70 -3.93 16 2 C -0.12 -5.22 5.35 30.59 0.16 -5.05 16 3 C 0.23 10.10 2.04 44.17 0.09 10.19 16 4 H -0.04 -1.91 7.33 -2.39 -0.02 -1.93 16 5 C -0.49 -24.46 7.53 25.60 0.19 -24.26 16 6 H 0.06 3.20 6.82 -2.91 -0.02 3.18 16 7 C 0.01 0.35 5.29 84.66 0.45 0.80 16 8 N -0.92 -51.73 11.29 21.45 0.24 -51.49 16 9 Si 0.94 42.77 29.54 68.60 2.03 44.79 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 13 N -0.66 -22.14 4.75 -473.30 -2.25 -24.38 16 14 C 0.10 3.01 2.84 44.92 0.13 3.14 16 15 C -0.11 -3.44 5.05 30.60 0.15 -3.29 16 16 C -0.08 -2.19 4.36 30.60 0.13 -2.05 16 17 C 0.09 1.97 0.56 -54.73 -0.03 1.94 16 18 C 0.25 6.25 10.97 89.44 0.98 7.23 16 19 N -0.48 -14.51 18.54 20.00 0.37 -14.14 16 20 C -0.09 -1.66 4.74 -19.86 -0.09 -1.75 16 21 C -0.07 -1.07 8.97 22.26 0.20 -0.87 16 22 C -0.15 -2.29 10.03 22.31 0.22 -2.06 16 23 C 0.08 1.53 7.30 22.37 0.16 1.69 16 24 F -0.15 -3.08 17.27 44.97 0.78 -2.30 16 25 C -0.16 -2.90 10.03 22.31 0.22 -2.67 16 26 C -0.09 -1.71 8.80 22.26 0.20 -1.52 16 27 C -0.10 -1.74 3.20 30.60 0.10 -1.64 16 28 C -0.12 -2.66 5.05 30.59 0.15 -2.50 16 29 H 0.06 1.77 6.35 -2.38 -0.02 1.75 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.03 1.06 8.14 -2.39 -0.02 1.05 16 32 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 3.06 5.96 -2.39 -0.01 3.05 16 34 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 35 H 0.33 9.45 5.62 -89.70 -0.50 8.95 16 36 H 0.01 0.41 7.32 -2.39 -0.02 0.39 16 37 H 0.04 1.29 7.22 -2.38 -0.02 1.28 16 38 H 0.06 2.27 6.11 -2.39 -0.01 2.26 16 39 H 0.10 2.84 7.60 -2.39 -0.02 2.82 16 40 H 0.06 1.56 7.39 -2.39 -0.02 1.54 16 41 H 0.17 1.58 5.89 -2.91 -0.02 1.56 16 42 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 43 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 44 H 0.13 2.45 7.56 -2.91 -0.02 2.43 16 45 H 0.11 1.76 6.72 -2.39 -0.02 1.74 16 46 H 0.10 1.18 7.52 -2.39 -0.02 1.17 16 47 H 0.08 1.62 8.12 -2.39 -0.02 1.60 16 48 H 0.05 1.29 7.22 -2.39 -0.02 1.27 16 Total: -1.00 -61.50 374.22 5.78 -55.73 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.48 Total: 18.40 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: 4.13 Total: -26.61 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -1.63 Total: -90.01 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.78 Total: -2.30 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -61.50 5.78 -55.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254348416.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.043 kcal (2) G-P(sol) polarization free energy of solvation -61.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds