Wall clock time and date at job start Tue Mar 31 2020 15:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47157 * 2 1 4 4 H 1.08998 * 109.47109 * 305.00420 * 3 2 1 5 5 C 1.50697 * 109.47303 * 184.99630 * 3 2 1 6 6 H 1.07991 * 120.00449 * 239.72787 * 5 3 2 7 7 C 1.37885 * 119.99686 * 60.00618 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48490 * 109.47339 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 120.00108 * 9 7 5 12 12 H 1.48504 * 109.46636 * 239.99667 * 9 7 5 13 13 N 1.46507 * 109.46582 * 64.99992 * 3 2 1 14 14 N 1.28932 * 124.99727 * 60.03074 * 13 3 2 15 15 C 1.32289 * 110.16450 * 179.89866 * 14 13 3 16 16 C 1.47704 * 126.67753 * 180.02562 * 15 14 13 17 17 O 1.21572 * 119.99895 * 179.97438 * 16 15 14 18 18 N 1.34779 * 120.00439 * 359.97438 * 16 15 14 19 19 C 1.46983 * 127.24950 * 359.67860 * 18 16 15 20 20 C 1.50586 * 107.13107 * 179.91420 * 19 18 16 21 21 C 1.30394 * 110.12323 * 0.37185 * 20 19 18 22 22 C 1.46984 * 127.25541 * 179.97438 * 18 16 15 23 23 C 1.40294 * 106.63685 * 359.97438 * 15 14 13 24 24 C 1.34030 * 124.99907 * 239.72143 * 13 3 2 25 25 C 1.50774 * 129.79663 * 1.00862 * 24 13 3 26 26 C 1.53560 * 107.84303 * 163.56250 * 25 24 13 27 27 N 1.46932 * 109.79559 * 49.03337 * 26 25 24 28 28 C 1.47405 * 111.47972 * 288.66141 * 27 26 25 29 29 H 1.09000 * 109.47171 * 59.99755 * 1 2 3 30 30 H 1.08993 * 109.47092 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47009 * 300.00022 * 1 2 3 32 32 H 1.09002 * 109.47049 * 240.00557 * 2 1 3 33 33 H 1.09000 * 109.47171 * 120.00245 * 2 1 3 34 34 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.90493 * 299.41287 * 19 18 16 36 36 H 1.09001 * 109.90226 * 60.66407 * 19 18 16 37 37 H 1.08006 * 124.94047 * 180.15058 * 20 19 18 38 38 H 1.08000 * 124.94715 * 179.75469 * 21 20 19 39 39 H 1.08996 * 109.90488 * 299.34095 * 22 18 16 40 40 H 1.09000 * 109.90437 * 60.40846 * 22 18 16 41 41 H 1.08993 * 109.95065 * 43.86825 * 25 24 13 42 42 H 1.08994 * 109.63368 * 283.07081 * 25 24 13 43 43 H 1.08997 * 109.41636 * 288.93196 * 26 25 24 44 44 H 1.09005 * 109.35888 * 169.10218 * 26 25 24 45 45 H 1.00905 * 110.99761 * 52.96063 * 27 26 25 46 46 H 1.09009 * 109.71646 * 291.19324 * 28 27 26 47 47 H 1.08998 * 109.76259 * 170.55723 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1237 6 1 4.1470 1.8928 0.6502 7 6 4.1433 0.8785 -1.2280 8 7 3.4064 0.3324 -2.1705 9 14 6.0046 0.8876 -1.3851 10 1 6.5981 1.5579 -0.2004 11 1 6.5015 -0.5094 -1.4646 12 1 6.3939 1.6222 -2.6156 13 7 1.6524 2.0975 1.2519 14 7 2.0026 1.7074 2.4298 15 6 1.4910 2.5113 3.3474 16 6 1.6613 2.4016 4.8105 17 8 1.1337 3.2128 5.5463 18 7 2.4017 1.4023 5.3298 19 6 3.1004 0.3382 4.5949 20 6 3.7859 -0.5300 5.6167 21 6 3.5464 -0.0833 6.8181 22 6 2.6756 1.1434 6.7505 23 6 0.7562 3.4890 2.6601 24 6 0.8863 3.1936 1.3409 25 6 0.2286 4.0024 0.2516 26 6 -0.8475 4.8828 0.9036 27 7 -0.2812 5.5829 2.0647 28 6 -0.0317 4.6571 3.1843 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 3.8296 -0.0660 -2.9471 35 1 2.3828 -0.2521 4.0251 36 1 3.8409 0.7747 3.9247 37 1 4.3855 -1.3987 5.3879 38 1 3.9185 -0.5282 7.7291 39 1 3.1976 1.9939 7.1887 40 1 1.7407 0.9676 7.2826 41 1 -0.2315 3.3374 -0.4791 42 1 0.9726 4.6306 -0.2381 43 1 -1.6795 4.2577 1.2277 44 1 -1.2045 5.6139 0.1783 45 1 0.5598 6.0800 1.8124 46 1 -0.9808 4.3079 3.5913 47 1 0.5375 5.1651 3.9628 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255167877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:22 Heat of formation + Delta-G solvation = 70.518196 kcal Electronic energy + Delta-G solvation = -29681.547123 eV Core-core repulsion = 25866.326001 eV Total energy + Delta-G solvation = -3815.221122 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.22185 -39.76098 -37.45184 -37.13192 -35.28081 -32.45004 -31.87519 -31.32888 -30.14738 -29.35637 -28.52228 -27.24410 -24.95865 -24.01199 -23.41281 -22.54114 -22.10990 -19.89580 -19.59900 -19.11485 -18.78944 -16.90585 -16.85301 -16.05177 -15.91777 -15.32182 -15.06622 -14.83122 -14.45732 -14.34785 -14.25978 -13.48203 -13.35783 -13.30171 -12.93841 -12.85350 -12.65159 -12.56180 -12.46721 -12.33912 -12.11455 -12.06186 -11.57355 -11.32620 -11.25412 -11.13349 -10.99532 -10.80502 -10.44086 -10.40247 -10.05271 -9.98396 -9.82239 -9.64472 -9.52452 -8.76310 -8.40674 -8.34738 -8.18802 -7.93689 -6.41115 -4.50093 2.08455 2.17320 2.69101 3.03607 3.09778 3.18931 3.23823 3.50251 3.87529 4.16093 4.47811 4.56128 4.71516 4.87804 4.92669 5.07104 5.16889 5.38528 5.44522 5.52596 5.57038 5.62572 5.78186 5.85053 5.86537 5.89410 5.91563 5.95718 5.96979 6.01263 6.09206 6.15523 6.23598 6.30314 6.41970 6.53931 6.58418 6.62502 6.71893 6.74948 6.98669 7.14087 7.15300 7.41723 7.50528 7.54364 7.69451 7.73922 7.82353 8.38114 8.54131 8.84226 9.17401 10.64047 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.008336 B = 0.005813 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3358.177301 B = 4815.660716 C = 7040.566455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.066 0.934 5 C -0.527 4.527 6 H 0.068 0.932 7 C 0.070 3.930 8 N -0.886 5.886 9 Si 0.907 3.093 10 H -0.271 1.271 11 H -0.279 1.279 12 H -0.281 1.281 13 N -0.214 5.214 14 N -0.238 5.238 15 C -0.042 4.042 16 C 0.636 3.364 17 O -0.541 6.541 18 N -0.613 5.613 19 C 0.130 3.870 20 C -0.158 4.158 21 C -0.182 4.182 22 C 0.133 3.867 23 C -0.204 4.204 24 C 0.002 3.998 25 C -0.082 4.082 26 C 0.065 3.935 27 N -0.685 5.685 28 C 0.143 3.857 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.035 0.965 32 H 0.114 0.886 33 H 0.052 0.948 34 H 0.268 0.732 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.341 0.659 46 H 0.078 0.922 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.398 0.832 8.133 8.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C 0.174 3.826 4 H 0.083 0.917 5 C -0.566 4.566 6 H 0.086 0.914 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.734 3.266 10 H -0.196 1.196 11 H -0.205 1.205 12 H -0.207 1.207 13 N -0.002 5.002 14 N -0.077 5.077 15 C -0.198 4.198 16 C 0.425 3.575 17 O -0.417 6.417 18 N -0.348 5.348 19 C 0.008 3.992 20 C -0.176 4.176 21 C -0.200 4.200 22 C 0.011 3.989 23 C -0.217 4.217 24 C -0.126 4.126 25 C -0.122 4.122 26 C -0.065 4.065 27 N -0.313 5.313 28 C 0.013 3.987 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.132 0.868 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.162 0.838 38 H 0.160 0.840 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.100 0.900 45 H 0.158 0.842 46 H 0.096 0.904 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.662 0.461 8.304 9.087 hybrid contribution 1.526 -0.229 -0.560 1.642 sum -2.136 0.232 7.744 8.037 Atomic orbital electron populations 1.21845 0.98576 1.00201 1.00111 1.21932 0.92344 0.97994 1.04384 1.19702 0.96919 0.90650 0.75330 0.91655 1.21173 0.89245 1.39535 1.06605 0.91395 1.24860 0.99272 0.94260 0.94977 1.69835 1.35528 1.37376 1.09618 0.86281 0.83962 0.78099 0.78304 1.19553 1.20511 1.20656 1.46236 1.29877 1.17300 1.06739 1.73921 1.19864 1.23625 0.90254 1.20949 1.06908 0.99296 0.92612 1.16398 0.76864 0.78913 0.85306 1.90733 1.49266 1.41407 1.60330 1.47912 1.50969 1.28279 1.07605 1.20853 0.96427 0.87976 0.93984 1.23437 0.99553 0.99740 0.94858 1.23217 1.00469 0.97590 0.98709 1.20637 0.98767 0.96398 0.83121 1.20520 1.06870 1.02291 0.91999 1.20918 1.01649 0.93975 0.96058 1.20928 0.98353 0.97697 0.95247 1.22055 0.96207 0.95983 0.92284 1.60827 1.34409 1.27991 1.08030 1.20312 0.97893 0.88013 0.92508 0.93486 0.93838 0.94616 0.86822 0.92930 0.92165 0.89589 0.89279 0.83791 0.83951 0.90742 0.90737 0.89973 0.90139 0.90800 0.90031 0.84169 0.90369 0.89569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.80 37.16 0.36 -2.42 16 2 C -0.13 -2.76 5.32 -26.73 -0.14 -2.91 16 3 C 0.27 6.14 2.36 -69.08 -0.16 5.97 16 4 H 0.07 1.54 7.30 -51.93 -0.38 1.16 16 5 C -0.53 -13.23 8.68 -34.44 -0.30 -13.53 16 6 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 7 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -22.34 11.28 55.43 0.63 -21.71 16 9 Si 0.91 19.80 29.54 -169.99 -5.02 14.78 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 N -0.21 -4.54 2.47 -51.87 -0.13 -4.67 16 14 N -0.24 -5.04 9.41 33.25 0.31 -4.72 16 15 C -0.04 -0.86 6.98 -83.03 -0.58 -1.44 16 16 C 0.64 12.32 7.90 -12.39 -0.10 12.22 16 17 O -0.54 -11.12 16.32 5.30 0.09 -11.03 16 18 N -0.61 -10.27 3.37 -176.95 -0.60 -10.87 16 19 C 0.13 2.02 5.65 -4.99 -0.03 1.99 16 20 C -0.16 -1.87 10.87 -35.91 -0.39 -2.26 16 21 C -0.18 -1.96 10.87 -35.91 -0.39 -2.35 16 22 C 0.13 1.77 7.00 -4.98 -0.03 1.74 16 23 C -0.20 -3.87 6.07 -104.90 -0.64 -4.50 16 24 C 0.00 0.04 6.78 -82.47 -0.56 -0.52 16 25 C -0.08 -1.25 5.77 -27.56 -0.16 -1.41 16 26 C 0.07 0.85 6.53 -3.52 -0.02 0.83 16 27 N -0.69 -9.64 6.88 -114.52 -0.79 -10.42 16 28 C 0.14 2.33 6.23 -4.88 -0.03 2.30 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.03 0.67 7.75 -51.93 -0.40 0.27 16 32 H 0.11 2.68 5.94 -51.93 -0.31 2.37 16 33 H 0.05 1.17 8.05 -51.93 -0.42 0.75 16 34 H 0.27 6.45 8.31 -40.82 -0.34 6.12 16 35 H 0.09 1.43 7.84 -51.93 -0.41 1.02 16 36 H 0.09 1.55 7.81 -51.93 -0.41 1.14 16 37 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 38 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 1.22 7.95 -51.93 -0.41 0.81 16 42 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 44 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.34 4.59 8.79 -39.29 -0.35 4.24 16 46 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 47 H 0.09 1.45 7.75 -51.93 -0.40 1.05 16 LS Contribution 379.17 15.07 5.71 5.71 Total: -1.00 -27.81 379.17 -10.31 -38.12 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -7.25 Total: 9.46 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -3.26 Total: -4.64 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.57 Total: -52.39 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -27.81 -10.31 -38.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.638 kcal (2) G-P(sol) polarization free energy of solvation -27.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds