Wall clock time and date at job start Tue Mar 31 2020 15:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47157 * 2 1 4 4 H 1.08998 * 109.47109 * 305.00420 * 3 2 1 5 5 C 1.50697 * 109.47303 * 184.99630 * 3 2 1 6 6 H 1.07991 * 120.00449 * 239.72787 * 5 3 2 7 7 C 1.37885 * 119.99686 * 60.00618 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48490 * 109.47339 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 120.00108 * 9 7 5 12 12 H 1.48504 * 109.46636 * 239.99667 * 9 7 5 13 13 N 1.46507 * 109.46582 * 64.99992 * 3 2 1 14 14 N 1.28932 * 124.99727 * 60.03074 * 13 3 2 15 15 C 1.32289 * 110.16450 * 179.89866 * 14 13 3 16 16 C 1.47704 * 126.67753 * 180.02562 * 15 14 13 17 17 O 1.21572 * 119.99895 * 179.97438 * 16 15 14 18 18 N 1.34779 * 120.00439 * 359.97438 * 16 15 14 19 19 C 1.46983 * 127.24950 * 359.67860 * 18 16 15 20 20 C 1.50586 * 107.13107 * 179.91420 * 19 18 16 21 21 C 1.30394 * 110.12323 * 0.37185 * 20 19 18 22 22 C 1.46984 * 127.25541 * 179.97438 * 18 16 15 23 23 C 1.40294 * 106.63685 * 359.97438 * 15 14 13 24 24 C 1.34030 * 124.99907 * 239.72143 * 13 3 2 25 25 C 1.50774 * 129.79663 * 1.00862 * 24 13 3 26 26 C 1.53560 * 107.84303 * 163.56250 * 25 24 13 27 27 N 1.46932 * 109.79559 * 49.03337 * 26 25 24 28 28 C 1.47405 * 111.47972 * 288.66141 * 27 26 25 29 29 H 1.09000 * 109.47171 * 59.99755 * 1 2 3 30 30 H 1.08993 * 109.47092 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47009 * 300.00022 * 1 2 3 32 32 H 1.09002 * 109.47049 * 240.00557 * 2 1 3 33 33 H 1.09000 * 109.47171 * 120.00245 * 2 1 3 34 34 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.90493 * 299.41287 * 19 18 16 36 36 H 1.09001 * 109.90226 * 60.66407 * 19 18 16 37 37 H 1.08006 * 124.94047 * 180.15058 * 20 19 18 38 38 H 1.08000 * 124.94715 * 179.75469 * 21 20 19 39 39 H 1.08996 * 109.90488 * 299.34095 * 22 18 16 40 40 H 1.09000 * 109.90437 * 60.40846 * 22 18 16 41 41 H 1.08993 * 109.95065 * 43.86825 * 25 24 13 42 42 H 1.08994 * 109.63368 * 283.07081 * 25 24 13 43 43 H 1.08997 * 109.41636 * 288.93196 * 26 25 24 44 44 H 1.09005 * 109.35888 * 169.10218 * 26 25 24 45 45 H 1.00905 * 110.99761 * 52.96063 * 27 26 25 46 46 H 1.09009 * 109.71646 * 291.19324 * 28 27 26 47 47 H 1.08998 * 109.76259 * 170.55723 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1237 6 1 4.1470 1.8928 0.6502 7 6 4.1433 0.8785 -1.2280 8 7 3.4064 0.3324 -2.1705 9 14 6.0046 0.8876 -1.3851 10 1 6.5981 1.5579 -0.2004 11 1 6.5015 -0.5094 -1.4646 12 1 6.3939 1.6222 -2.6156 13 7 1.6524 2.0975 1.2519 14 7 2.0026 1.7074 2.4298 15 6 1.4910 2.5113 3.3474 16 6 1.6613 2.4016 4.8105 17 8 1.1337 3.2128 5.5463 18 7 2.4017 1.4023 5.3298 19 6 3.1004 0.3382 4.5949 20 6 3.7859 -0.5300 5.6167 21 6 3.5464 -0.0833 6.8181 22 6 2.6756 1.1434 6.7505 23 6 0.7562 3.4890 2.6601 24 6 0.8863 3.1936 1.3409 25 6 0.2286 4.0024 0.2516 26 6 -0.8475 4.8828 0.9036 27 7 -0.2812 5.5829 2.0647 28 6 -0.0317 4.6571 3.1843 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 3.8296 -0.0660 -2.9471 35 1 2.3828 -0.2521 4.0251 36 1 3.8409 0.7747 3.9247 37 1 4.3855 -1.3987 5.3879 38 1 3.9185 -0.5282 7.7291 39 1 3.1976 1.9939 7.1887 40 1 1.7407 0.9676 7.2826 41 1 -0.2315 3.3374 -0.4791 42 1 0.9726 4.6306 -0.2381 43 1 -1.6795 4.2577 1.2277 44 1 -1.2045 5.6139 0.1783 45 1 0.5598 6.0800 1.8124 46 1 -0.9808 4.3079 3.5913 47 1 0.5375 5.1651 3.9628 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:22 Heat of formation + Delta-G solvation = 54.020978 kcal Electronic energy + Delta-G solvation = -29682.262496 eV Core-core repulsion = 25866.326001 eV Total energy + Delta-G solvation = -3815.936495 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.76393 -41.06704 -38.81269 -38.40665 -37.00693 -34.18931 -33.26372 -32.72290 -31.57802 -30.72007 -29.76447 -28.91299 -26.42507 -25.51955 -24.87929 -23.77367 -23.62048 -21.52129 -20.77765 -20.41951 -20.18590 -18.72603 -18.18882 -17.67141 -17.31952 -16.71012 -16.64694 -16.19413 -15.99416 -15.66339 -15.41648 -15.02362 -14.88949 -14.64471 -14.45172 -14.17314 -14.04496 -13.85080 -13.77734 -13.73526 -13.43264 -13.33661 -13.31318 -12.91950 -12.77170 -12.51460 -12.34181 -12.23525 -12.09985 -11.96042 -11.79582 -11.55399 -11.35797 -11.28086 -10.73876 -10.66029 -9.94659 -9.63104 -9.51042 -9.36469 -8.32613 -6.47736 0.61715 1.16148 1.18589 1.34176 1.38683 1.47994 1.65389 1.98070 2.31864 2.35054 2.96025 3.24513 3.38097 3.63335 3.66905 3.74122 3.95561 4.09384 4.21049 4.26972 4.32927 4.38017 4.45295 4.48821 4.50870 4.58835 4.59636 4.64341 4.65705 4.76716 4.81982 4.86427 4.91111 5.00842 5.04538 5.10340 5.16958 5.20859 5.34911 5.37805 5.47757 5.57258 5.63348 5.78944 5.92299 5.96263 6.12438 6.28435 6.41335 6.56607 6.90353 7.21043 7.27092 8.71560 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.008336 B = 0.005813 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3358.177301 B = 4815.660716 C = 7040.566455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 C 0.280 3.720 4 H 0.057 0.943 5 C -0.544 4.544 6 H 0.044 0.956 7 C 0.037 3.963 8 N -0.900 5.900 9 Si 0.959 3.041 10 H -0.280 1.280 11 H -0.272 1.272 12 H -0.273 1.273 13 N -0.230 5.230 14 N -0.259 5.259 15 C -0.056 4.056 16 C 0.628 3.372 17 O -0.559 6.559 18 N -0.615 5.615 19 C 0.131 3.869 20 C -0.169 4.169 21 C -0.154 4.154 22 C 0.120 3.880 23 C -0.212 4.212 24 C -0.003 4.003 25 C -0.080 4.080 26 C 0.072 3.928 27 N -0.677 5.677 28 C 0.152 3.848 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.028 0.972 32 H 0.095 0.905 33 H 0.036 0.964 34 H 0.273 0.727 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.171 0.829 38 H 0.186 0.814 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.114 0.886 45 H 0.346 0.654 46 H 0.079 0.921 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.526 0.735 8.707 9.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.158 4.158 3 C 0.181 3.819 4 H 0.075 0.925 5 C -0.582 4.582 6 H 0.062 0.938 7 C -0.165 4.165 8 N -0.538 5.538 9 Si 0.784 3.216 10 H -0.206 1.206 11 H -0.197 1.197 12 H -0.199 1.199 13 N -0.016 5.016 14 N -0.097 5.097 15 C -0.212 4.212 16 C 0.417 3.583 17 O -0.438 6.438 18 N -0.348 5.348 19 C 0.008 3.992 20 C -0.187 4.187 21 C -0.172 4.172 22 C -0.001 4.001 23 C -0.225 4.225 24 C -0.131 4.131 25 C -0.121 4.121 26 C -0.058 4.058 27 N -0.304 5.304 28 C 0.021 3.979 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.113 0.887 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.189 0.811 38 H 0.203 0.797 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.132 0.868 45 H 0.164 0.836 46 H 0.097 0.903 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.784 0.348 8.880 9.658 hybrid contribution 1.564 -0.175 -0.694 1.720 sum -2.219 0.173 8.186 8.483 Atomic orbital electron populations 1.21705 0.96091 1.01474 1.00151 1.21747 0.94463 0.96998 1.02557 1.19416 0.95513 0.91110 0.75814 0.92538 1.21221 0.90622 1.40059 1.06346 0.93798 1.25426 1.02562 0.93849 0.94642 1.69894 1.36711 1.37363 1.09805 0.85488 0.79920 0.78272 0.77897 1.20552 1.19707 1.19854 1.46098 1.30941 1.18281 1.06303 1.73893 1.20756 1.24549 0.90529 1.21369 1.06942 0.99599 0.93265 1.16396 0.77407 0.79528 0.84983 1.90702 1.50331 1.42260 1.60467 1.48015 1.49773 1.27520 1.09511 1.20809 0.95534 0.87927 0.94907 1.23463 1.00771 1.00546 0.93924 1.23491 0.98349 0.95512 0.99809 1.20977 0.99989 0.98110 0.81046 1.20935 1.06825 1.02761 0.91971 1.21586 1.00840 0.93304 0.97389 1.21108 0.98870 0.97633 0.94461 1.22144 0.95114 0.96288 0.92267 1.60852 1.34527 1.27121 1.07926 1.20232 0.97219 0.87304 0.93117 0.92560 0.91962 0.95272 0.88666 0.94479 0.91776 0.91444 0.92011 0.81133 0.79723 0.90167 0.89892 0.89467 0.89757 0.90781 0.86753 0.83611 0.90317 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 9.80 71.98 0.71 -4.35 16 2 C -0.12 -5.26 5.32 30.60 0.16 -5.10 16 3 C 0.28 13.02 2.36 44.24 0.10 13.12 16 4 H 0.06 2.71 7.30 -2.39 -0.02 2.70 16 5 C -0.54 -28.21 8.68 25.60 0.22 -27.99 16 6 H 0.04 2.44 7.81 -2.92 -0.02 2.42 16 7 C 0.04 1.88 5.30 84.66 0.45 2.33 16 8 N -0.90 -45.61 11.28 21.45 0.24 -45.37 16 9 Si 0.96 40.90 29.54 68.60 2.03 42.92 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 12 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 13 N -0.23 -10.04 2.47 -318.02 -0.78 -10.83 16 14 N -0.26 -11.50 9.41 -48.71 -0.46 -11.96 16 15 C -0.06 -2.35 6.98 42.08 0.29 -2.06 16 16 C 0.63 25.08 7.90 86.74 0.68 25.76 16 17 O -0.56 -23.40 16.32 -3.94 -0.06 -23.46 16 18 N -0.62 -20.98 3.37 -832.00 -2.81 -23.79 16 19 C 0.13 4.21 5.65 85.51 0.48 4.69 16 20 C -0.17 -3.77 10.87 26.24 0.29 -3.48 16 21 C -0.15 -2.90 10.87 26.24 0.29 -2.62 16 22 C 0.12 3.05 7.00 85.51 0.60 3.65 16 23 C -0.21 -8.17 6.07 -20.04 -0.12 -8.29 16 24 C 0.00 -0.13 6.78 41.68 0.28 0.15 16 25 C -0.08 -2.38 5.77 30.06 0.17 -2.21 16 26 C 0.07 1.73 6.53 86.49 0.56 2.29 16 27 N -0.68 -18.01 6.88 -516.22 -3.55 -21.56 16 28 C 0.15 4.91 6.23 85.34 0.53 5.44 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.03 1.09 7.75 -2.39 -0.02 1.07 16 32 H 0.10 4.59 5.94 -2.39 -0.01 4.57 16 33 H 0.04 1.71 8.05 -2.39 -0.02 1.69 16 34 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 35 H 0.07 2.38 7.84 -2.39 -0.02 2.36 16 36 H 0.06 2.29 7.81 -2.39 -0.02 2.27 16 37 H 0.17 2.88 8.06 -2.91 -0.02 2.85 16 38 H 0.19 1.99 8.06 -2.91 -0.02 1.96 16 39 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.09 2.50 7.95 -2.39 -0.02 2.49 16 42 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.07 1.81 8.07 -2.39 -0.02 1.79 16 44 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 45 H 0.35 8.80 8.79 -89.69 -0.79 8.01 16 46 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 47 H 0.08 2.67 7.75 -2.39 -0.02 2.65 16 Total: -1.00 -61.86 379.17 0.50 -61.36 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.19 Total: 31.33 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 5.70 Total: 1.36 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -7.36 Total: -113.50 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.06 Total: -23.46 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.92 kcal Total: -61.86 0.50 -61.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.376 kcal (2) G-P(sol) polarization free energy of solvation -61.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds