Wall clock time and date at job start Tue Mar 31 2020 15:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47069 * 2 1 4 4 H 1.08999 * 109.46938 * 305.61428 * 3 2 1 5 5 C 1.50697 * 109.47222 * 65.61211 * 3 2 1 6 6 H 1.08000 * 119.99821 * 56.40146 * 5 3 2 7 7 C 1.37875 * 119.99898 * 236.39476 * 5 3 2 8 8 N 1.31516 * 119.99755 * 187.79368 * 7 5 3 9 9 Si 1.86800 * 120.00077 * 7.79851 * 7 5 3 10 10 H 1.48496 * 109.47215 * 274.10159 * 9 7 5 11 11 H 1.48508 * 109.46914 * 154.10359 * 9 7 5 12 12 H 1.48496 * 109.47136 * 34.10554 * 9 7 5 13 13 N 1.46505 * 109.46841 * 185.61642 * 3 2 1 14 14 N 1.28930 * 124.99846 * 299.69127 * 13 3 2 15 15 C 1.32279 * 110.16764 * 179.78437 * 14 13 3 16 16 C 1.47708 * 126.68467 * 180.09346 * 15 14 13 17 17 O 1.21570 * 120.00407 * 180.32207 * 16 15 14 18 18 N 1.34780 * 119.99656 * 0.31956 * 16 15 14 19 19 C 1.46986 * 127.25340 * 359.68119 * 18 16 15 20 20 C 1.50590 * 107.13406 * 179.91253 * 19 18 16 21 21 C 1.30399 * 110.11763 * 0.37027 * 20 19 18 22 22 C 1.46982 * 127.25521 * 180.02562 * 18 16 15 23 23 C 1.40296 * 106.63940 * 0.36191 * 15 14 13 24 24 C 1.34039 * 124.99970 * 119.99782 * 13 3 2 25 25 C 1.50758 * 129.79856 * 0.28571 * 24 13 3 26 26 C 1.53554 * 107.78455 * 163.95747 * 25 24 13 27 27 N 1.46938 * 109.79447 * 49.26709 * 26 25 24 28 28 C 1.47410 * 111.48116 * 288.67300 * 27 26 25 29 29 H 1.09005 * 109.47158 * 59.66190 * 1 2 3 30 30 H 1.09000 * 109.47514 * 179.66239 * 1 2 3 31 31 H 1.08998 * 109.47230 * 299.66750 * 1 2 3 32 32 H 1.09001 * 109.47177 * 239.99451 * 2 1 3 33 33 H 1.09006 * 109.47043 * 119.99725 * 2 1 3 34 34 H 0.97008 * 119.99792 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.90785 * 299.41087 * 19 18 16 36 36 H 1.08992 * 109.90235 * 60.66479 * 19 18 16 37 37 H 1.07993 * 124.94138 * 180.14259 * 20 19 18 38 38 H 1.08002 * 124.93655 * 179.74946 * 21 20 19 39 39 H 1.09005 * 109.89888 * 299.33731 * 22 18 16 40 40 H 1.08996 * 109.90628 * 60.40081 * 22 18 16 41 41 H 1.08993 * 109.79993 * 283.52742 * 25 24 13 42 42 H 1.09000 * 109.79907 * 44.33467 * 25 24 13 43 43 H 1.09001 * 109.41569 * 169.36166 * 26 25 24 44 44 H 1.09001 * 109.41961 * 289.23196 * 26 25 24 45 45 H 1.00901 * 111.00249 * 52.97790 * 27 26 25 46 46 H 1.09001 * 109.71783 * 170.54352 * 28 27 26 47 47 H 1.09000 * 109.72080 * 291.15500 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5969 1.9845 -0.8354 5 6 1.6543 2.1117 1.2940 6 1 1.9553 1.6786 2.2365 7 6 0.9174 3.2768 1.2747 8 7 0.7112 3.9430 2.3897 9 14 0.2117 3.9090 -0.3352 10 1 1.2314 4.7326 -1.0331 11 1 -0.9888 4.7380 -0.0578 12 1 -0.1685 2.7591 -1.1945 13 7 3.4988 1.4447 -0.1352 14 7 4.3190 0.8929 0.6926 15 6 5.5651 1.0681 0.2849 16 6 6.7892 0.5857 0.9562 17 8 7.8801 0.8221 0.4746 18 7 6.6967 -0.1166 2.1029 19 6 5.4701 -0.4855 2.8239 20 6 5.8890 -1.2661 4.0416 21 6 7.1884 -1.3660 4.0852 22 6 7.8015 -0.6691 2.8995 23 6 5.4982 1.8066 -0.9060 24 6 4.1774 2.0255 -1.1346 25 6 3.6690 2.7979 -2.3252 26 6 4.8526 3.5734 -2.9214 27 7 5.9987 2.6717 -3.1006 28 6 6.5975 2.2961 -1.8070 29 1 -0.3634 0.5191 -0.8870 30 1 -0.3634 -1.0276 -0.0061 31 1 -0.3633 0.5086 0.8929 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.1924 4.7626 2.3762 35 1 4.9316 0.4134 3.1242 36 1 4.8378 -1.1048 2.1878 37 1 5.2119 -1.6796 4.7743 38 1 7.7440 -1.8741 4.8596 39 1 8.3688 -1.3830 2.3022 40 1 8.4553 0.1356 3.2356 41 1 3.2673 2.1089 -3.0681 42 1 2.8920 3.4940 -2.0093 43 1 4.5640 3.9890 -3.8869 44 1 5.1317 4.3832 -2.2472 45 1 5.7357 1.8530 -3.6286 46 1 7.3304 1.5033 -1.9573 47 1 7.0815 3.1643 -1.3598 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255167878.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:25 Heat of formation + Delta-G solvation = 71.053967 kcal Electronic energy + Delta-G solvation = -29686.252977 eV Core-core repulsion = 25871.055088 eV Total energy + Delta-G solvation = -3815.197889 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.15463 -39.72562 -37.42416 -37.12702 -35.42424 -32.49228 -32.06504 -31.54911 -30.18888 -29.36424 -28.52592 -27.27029 -24.94414 -24.16042 -23.50786 -22.55989 -22.02166 -19.83553 -19.57399 -19.13390 -18.81130 -17.38041 -16.81415 -16.22812 -15.92334 -15.36644 -14.92307 -14.90679 -14.46735 -14.32199 -14.25817 -13.76914 -13.36192 -13.26160 -13.07039 -12.98050 -12.91491 -12.61582 -12.45406 -12.32197 -12.21156 -12.11552 -11.59839 -11.35832 -11.33636 -11.28199 -11.01398 -10.87894 -10.76759 -10.25051 -10.07484 -10.05195 -9.80964 -9.61339 -9.50316 -9.01795 -8.40489 -8.34120 -8.16257 -7.90495 -6.55950 -4.61470 2.11358 2.21865 2.69671 2.90701 2.98471 3.04114 3.08404 3.44133 3.91697 3.96809 4.47378 4.58084 4.74049 4.81102 4.93686 5.06883 5.13859 5.35743 5.43166 5.54387 5.59010 5.60422 5.66653 5.73061 5.79296 5.86339 5.87744 5.88517 5.94377 5.96034 6.03828 6.08463 6.17138 6.24507 6.32834 6.34858 6.46465 6.48150 6.60029 6.74790 6.79326 6.88694 7.03916 7.13591 7.16192 7.53867 7.65668 7.75826 8.02467 8.42398 8.58412 8.85616 9.01820 10.54424 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010133 B = 0.005464 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.464970 B = 5123.685305 C = 6891.963276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.112 4.112 3 C 0.220 3.780 4 H 0.069 0.931 5 C -0.513 4.513 6 H 0.090 0.910 7 C 0.087 3.913 8 N -0.863 5.863 9 Si 0.860 3.140 10 H -0.267 1.267 11 H -0.277 1.277 12 H -0.257 1.257 13 N -0.219 5.219 14 N -0.237 5.237 15 C -0.042 4.042 16 C 0.636 3.364 17 O -0.542 6.542 18 N -0.613 5.613 19 C 0.130 3.870 20 C -0.158 4.158 21 C -0.182 4.182 22 C 0.133 3.867 23 C -0.201 4.201 24 C -0.009 4.009 25 C -0.087 4.087 26 C 0.065 3.935 27 N -0.684 5.684 28 C 0.142 3.858 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.037 0.963 33 H 0.069 0.931 34 H 0.273 0.727 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.339 0.661 46 H 0.086 0.914 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.278 -7.246 -3.951 9.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C 0.125 3.875 4 H 0.087 0.913 5 C -0.551 4.551 6 H 0.108 0.892 7 C -0.122 4.122 8 N -0.497 5.497 9 Si 0.686 3.314 10 H -0.192 1.192 11 H -0.203 1.203 12 H -0.182 1.182 13 N -0.008 5.008 14 N -0.076 5.076 15 C -0.197 4.197 16 C 0.425 3.575 17 O -0.418 6.418 18 N -0.348 5.348 19 C 0.008 3.992 20 C -0.176 4.176 21 C -0.200 4.200 22 C 0.011 3.989 23 C -0.214 4.214 24 C -0.136 4.136 25 C -0.127 4.127 26 C -0.066 4.066 27 N -0.311 5.311 28 C 0.012 3.988 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.162 0.838 38 H 0.160 0.840 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.156 0.844 46 H 0.105 0.895 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.466 -6.847 -3.467 9.423 hybrid contribution -0.940 0.233 -0.647 1.165 sum 4.526 -6.614 -4.114 9.009 Atomic orbital electron populations 1.21676 0.95062 1.00283 1.02773 1.21684 0.96435 0.96227 1.00726 1.20100 0.71553 0.95940 0.99859 0.91344 1.20952 1.34230 1.08331 0.91612 0.89220 1.25144 0.95351 0.95202 0.96455 1.69887 1.37081 1.15584 1.27099 0.87155 0.80046 0.79885 0.84340 1.19245 1.20287 1.18171 1.47507 1.09076 1.31996 1.12178 1.73847 0.98828 1.17650 1.17270 1.20924 0.91482 1.08992 0.98300 1.16411 0.87011 0.76179 0.77855 1.90729 1.27727 1.58445 1.64911 1.47904 1.08658 1.54673 1.23519 1.20850 0.87337 0.99793 0.91237 1.23435 0.96984 0.98891 0.98280 1.23216 0.96282 1.01603 0.98877 1.20635 0.90308 0.97317 0.90670 1.20512 0.94876 1.06649 0.99342 1.20963 0.91890 1.04857 0.95922 1.20972 1.00062 0.98414 0.93266 1.22045 0.88176 0.95685 1.00652 1.60833 1.31025 1.20898 1.18333 1.20326 0.93052 0.99947 0.85482 0.93742 0.93658 0.90671 0.94454 0.91230 0.91686 0.89119 0.89778 0.83796 0.83959 0.90791 0.90717 0.90550 0.90165 0.90041 0.90543 0.84399 0.89535 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.73 37.16 0.36 -2.03 16 2 C -0.11 -2.10 5.57 -26.73 -0.15 -2.25 16 3 C 0.22 4.71 2.42 -69.08 -0.17 4.54 16 4 H 0.07 1.44 3.86 -51.93 -0.20 1.24 16 5 C -0.51 -12.80 8.03 -34.44 -0.28 -13.08 16 6 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 7 C 0.09 2.21 5.47 -17.82 -0.10 2.12 16 8 N -0.86 -23.71 13.96 55.43 0.77 -22.94 16 9 Si 0.86 18.53 26.55 -169.99 -4.51 14.02 16 10 H -0.27 -5.66 6.75 56.52 0.38 -5.27 16 11 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.26 -5.10 6.21 56.52 0.35 -4.75 16 13 N -0.22 -4.69 3.01 -51.88 -0.16 -4.85 16 14 N -0.24 -5.08 9.48 33.25 0.32 -4.77 16 15 C -0.04 -0.87 6.98 -83.03 -0.58 -1.45 16 16 C 0.64 12.59 7.90 -12.39 -0.10 12.50 16 17 O -0.54 -11.36 16.32 5.30 0.09 -11.28 16 18 N -0.61 -10.47 3.37 -176.95 -0.60 -11.06 16 19 C 0.13 2.05 5.65 -4.98 -0.03 2.02 16 20 C -0.16 -1.89 10.87 -35.91 -0.39 -2.28 16 21 C -0.18 -2.00 10.87 -35.91 -0.39 -2.39 16 22 C 0.13 1.81 7.00 -4.99 -0.03 1.78 16 23 C -0.20 -3.93 6.07 -104.90 -0.64 -4.57 16 24 C -0.01 -0.17 6.78 -82.47 -0.56 -0.73 16 25 C -0.09 -1.40 5.78 -27.57 -0.16 -1.56 16 26 C 0.06 0.92 6.53 -3.52 -0.02 0.89 16 27 N -0.68 -9.84 6.88 -114.52 -0.79 -10.63 16 28 C 0.14 2.39 6.23 -4.88 -0.03 2.36 16 29 H 0.04 0.73 7.65 -51.93 -0.40 0.34 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.41 7.41 -51.93 -0.38 1.02 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.09 1.63 7.83 -51.93 -0.41 1.22 16 36 H 0.08 1.37 7.82 -51.93 -0.41 0.96 16 37 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.08 1.38 7.09 -51.93 -0.37 1.01 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 45 H 0.34 4.45 8.79 -39.29 -0.35 4.10 16 46 H 0.09 1.46 7.75 -51.93 -0.40 1.06 16 47 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 375.37 15.07 5.66 5.66 Total: -1.00 -29.18 375.37 -9.67 -38.85 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -7.19 Total: 11.13 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -3.26 Total: -4.13 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.45 Total: -54.25 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -4.51 Total: 14.02 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.18 -9.67 -38.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167878.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.901 kcal (2) G-P(sol) polarization free energy of solvation -29.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds