Wall clock time and date at job start Tue Mar 31 2020 15:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47069 * 2 1 4 4 H 1.08999 * 109.46938 * 305.61428 * 3 2 1 5 5 C 1.50697 * 109.47222 * 65.61211 * 3 2 1 6 6 H 1.08000 * 119.99821 * 56.40146 * 5 3 2 7 7 C 1.37875 * 119.99898 * 236.39476 * 5 3 2 8 8 N 1.31516 * 119.99755 * 187.79368 * 7 5 3 9 9 Si 1.86800 * 120.00077 * 7.79851 * 7 5 3 10 10 H 1.48496 * 109.47215 * 274.10159 * 9 7 5 11 11 H 1.48508 * 109.46914 * 154.10359 * 9 7 5 12 12 H 1.48496 * 109.47136 * 34.10554 * 9 7 5 13 13 N 1.46505 * 109.46841 * 185.61642 * 3 2 1 14 14 N 1.28930 * 124.99846 * 299.69127 * 13 3 2 15 15 C 1.32279 * 110.16764 * 179.78437 * 14 13 3 16 16 C 1.47708 * 126.68467 * 180.09346 * 15 14 13 17 17 O 1.21570 * 120.00407 * 180.32207 * 16 15 14 18 18 N 1.34780 * 119.99656 * 0.31956 * 16 15 14 19 19 C 1.46986 * 127.25340 * 359.68119 * 18 16 15 20 20 C 1.50590 * 107.13406 * 179.91253 * 19 18 16 21 21 C 1.30399 * 110.11763 * 0.37027 * 20 19 18 22 22 C 1.46982 * 127.25521 * 180.02562 * 18 16 15 23 23 C 1.40296 * 106.63940 * 0.36191 * 15 14 13 24 24 C 1.34039 * 124.99970 * 119.99782 * 13 3 2 25 25 C 1.50758 * 129.79856 * 0.28571 * 24 13 3 26 26 C 1.53554 * 107.78455 * 163.95747 * 25 24 13 27 27 N 1.46938 * 109.79447 * 49.26709 * 26 25 24 28 28 C 1.47410 * 111.48116 * 288.67300 * 27 26 25 29 29 H 1.09005 * 109.47158 * 59.66190 * 1 2 3 30 30 H 1.09000 * 109.47514 * 179.66239 * 1 2 3 31 31 H 1.08998 * 109.47230 * 299.66750 * 1 2 3 32 32 H 1.09001 * 109.47177 * 239.99451 * 2 1 3 33 33 H 1.09006 * 109.47043 * 119.99725 * 2 1 3 34 34 H 0.97008 * 119.99792 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.90785 * 299.41087 * 19 18 16 36 36 H 1.08992 * 109.90235 * 60.66479 * 19 18 16 37 37 H 1.07993 * 124.94138 * 180.14259 * 20 19 18 38 38 H 1.08002 * 124.93655 * 179.74946 * 21 20 19 39 39 H 1.09005 * 109.89888 * 299.33731 * 22 18 16 40 40 H 1.08996 * 109.90628 * 60.40081 * 22 18 16 41 41 H 1.08993 * 109.79993 * 283.52742 * 25 24 13 42 42 H 1.09000 * 109.79907 * 44.33467 * 25 24 13 43 43 H 1.09001 * 109.41569 * 169.36166 * 26 25 24 44 44 H 1.09001 * 109.41961 * 289.23196 * 26 25 24 45 45 H 1.00901 * 111.00249 * 52.97790 * 27 26 25 46 46 H 1.09001 * 109.71783 * 170.54352 * 28 27 26 47 47 H 1.09000 * 109.72080 * 291.15500 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5969 1.9845 -0.8354 5 6 1.6543 2.1117 1.2940 6 1 1.9553 1.6786 2.2365 7 6 0.9174 3.2768 1.2747 8 7 0.7112 3.9430 2.3897 9 14 0.2117 3.9090 -0.3352 10 1 1.2314 4.7326 -1.0331 11 1 -0.9888 4.7380 -0.0578 12 1 -0.1685 2.7591 -1.1945 13 7 3.4988 1.4447 -0.1352 14 7 4.3190 0.8929 0.6926 15 6 5.5651 1.0681 0.2849 16 6 6.7892 0.5857 0.9562 17 8 7.8801 0.8221 0.4746 18 7 6.6967 -0.1166 2.1029 19 6 5.4701 -0.4855 2.8239 20 6 5.8890 -1.2661 4.0416 21 6 7.1884 -1.3660 4.0852 22 6 7.8015 -0.6691 2.8995 23 6 5.4982 1.8066 -0.9060 24 6 4.1774 2.0255 -1.1346 25 6 3.6690 2.7979 -2.3252 26 6 4.8526 3.5734 -2.9214 27 7 5.9987 2.6717 -3.1006 28 6 6.5975 2.2961 -1.8070 29 1 -0.3634 0.5191 -0.8870 30 1 -0.3634 -1.0276 -0.0061 31 1 -0.3633 0.5086 0.8929 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.1924 4.7626 2.3762 35 1 4.9316 0.4134 3.1242 36 1 4.8378 -1.1048 2.1878 37 1 5.2119 -1.6796 4.7743 38 1 7.7440 -1.8741 4.8596 39 1 8.3688 -1.3830 2.3022 40 1 8.4553 0.1356 3.2356 41 1 3.2673 2.1089 -3.0681 42 1 2.8920 3.4940 -2.0093 43 1 4.5640 3.9890 -3.8869 44 1 5.1317 4.3832 -2.2472 45 1 5.7357 1.8530 -3.6286 46 1 7.3304 1.5033 -1.9573 47 1 7.0815 3.1643 -1.3598 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167878.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:24 Heat of formation + Delta-G solvation = 51.442608 kcal Electronic energy + Delta-G solvation = -29687.103390 eV Core-core repulsion = 25871.055088 eV Total energy + Delta-G solvation = -3816.048302 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.73168 -41.07069 -38.82036 -38.43386 -37.07410 -34.35719 -33.48997 -32.85604 -31.60886 -30.75601 -29.78560 -28.91710 -26.48556 -25.66627 -24.90891 -23.83309 -23.46909 -21.44566 -20.81541 -20.46346 -20.24920 -19.21254 -18.19460 -17.80952 -17.34895 -16.78442 -16.44528 -16.30673 -15.92641 -15.71381 -15.42628 -15.35623 -14.94920 -14.71784 -14.54283 -14.43178 -14.25337 -13.86090 -13.80723 -13.74303 -13.51257 -13.32515 -13.20767 -12.89535 -12.76279 -12.47657 -12.40957 -12.33470 -12.01765 -11.93638 -11.81388 -11.60990 -11.37266 -11.18114 -10.92525 -10.74377 -9.94067 -9.65490 -9.52459 -9.36636 -8.51348 -6.63240 0.62053 1.12749 1.16766 1.23666 1.24442 1.35027 1.63419 1.93537 2.15790 2.33595 2.95769 3.21149 3.35950 3.59313 3.65429 3.66349 3.87327 4.01419 4.10274 4.17566 4.24331 4.33612 4.38289 4.44788 4.48116 4.52270 4.57919 4.62115 4.63663 4.69031 4.76994 4.83999 4.85692 4.86544 4.97262 5.06796 5.15499 5.19188 5.19478 5.32102 5.34461 5.49660 5.55329 5.78178 5.90216 5.95165 6.20549 6.28195 6.44550 6.50671 6.89131 7.04321 7.24754 8.63310 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010133 B = 0.005464 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.464970 B = 5123.685305 C = 6891.963276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 C 0.227 3.773 4 H 0.081 0.919 5 C -0.515 4.515 6 H 0.038 0.962 7 C 0.034 3.966 8 N -0.919 5.919 9 Si 0.915 3.085 10 H -0.257 1.257 11 H -0.278 1.278 12 H -0.222 1.222 13 N -0.236 5.236 14 N -0.258 5.258 15 C -0.058 4.058 16 C 0.627 3.373 17 O -0.560 6.560 18 N -0.615 5.615 19 C 0.132 3.868 20 C -0.169 4.169 21 C -0.154 4.154 22 C 0.120 3.880 23 C -0.212 4.212 24 C -0.014 4.014 25 C -0.087 4.087 26 C 0.069 3.931 27 N -0.673 5.673 28 C 0.151 3.849 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.274 0.726 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.172 0.828 38 H 0.186 0.814 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.073 0.927 43 H 0.119 0.881 44 H 0.062 0.938 45 H 0.351 0.649 46 H 0.085 0.915 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.475 -8.277 -6.318 11.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.147 4.147 3 C 0.131 3.869 4 H 0.099 0.901 5 C -0.553 4.553 6 H 0.056 0.944 7 C -0.169 4.169 8 N -0.555 5.555 9 Si 0.736 3.264 10 H -0.182 1.182 11 H -0.204 1.204 12 H -0.145 1.145 13 N -0.024 5.024 14 N -0.097 5.097 15 C -0.213 4.213 16 C 0.416 3.584 17 O -0.438 6.438 18 N -0.348 5.348 19 C 0.009 3.991 20 C -0.187 4.187 21 C -0.171 4.171 22 C -0.002 4.002 23 C -0.224 4.224 24 C -0.141 4.141 25 C -0.127 4.127 26 C -0.062 4.062 27 N -0.300 5.300 28 C 0.020 3.980 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.189 0.811 38 H 0.204 0.796 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.124 0.876 42 H 0.092 0.908 43 H 0.137 0.863 44 H 0.081 0.919 45 H 0.169 0.831 46 H 0.103 0.897 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.667 -7.921 -5.827 11.349 hybrid contribution -0.869 0.490 0.170 1.012 sum 4.798 -7.431 -5.656 10.499 Atomic orbital electron populations 1.21637 0.93451 1.02162 1.02071 1.21648 0.97752 0.94457 1.00807 1.20041 0.71467 0.97300 0.98043 0.90088 1.20906 1.34382 1.08553 0.91480 0.94359 1.25999 0.95517 0.95241 1.00154 1.70036 1.38969 1.16572 1.29910 0.86265 0.79352 0.80459 0.80284 1.18152 1.20357 1.14506 1.47210 1.09062 1.33070 1.13076 1.73839 0.99331 1.18720 1.17811 1.21359 0.91645 1.09244 0.99071 1.16428 0.86536 0.76704 0.78707 1.90696 1.27933 1.59473 1.65741 1.48017 1.10371 1.53551 1.22908 1.20794 0.86784 0.98719 0.92780 1.23463 0.98072 0.99712 0.97489 1.23497 0.95694 0.99904 0.98026 1.20981 0.89672 0.97893 0.91607 1.20944 0.95865 1.06341 0.99277 1.21643 0.91933 1.04185 0.96382 1.21204 1.00670 0.98553 0.92321 1.22135 0.87081 0.94844 1.02100 1.60829 1.31227 1.21399 1.16574 1.20222 0.92305 0.99298 0.86127 0.92456 0.90651 0.93159 0.92532 0.92912 0.91694 0.92572 0.91084 0.81104 0.79649 0.89665 0.90391 0.87641 0.90842 0.86288 0.91948 0.83114 0.89712 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 9.73 71.98 0.70 -3.70 16 2 C -0.11 -3.99 5.57 30.59 0.17 -3.82 16 3 C 0.23 9.72 2.42 44.24 0.11 9.82 16 4 H 0.08 3.24 3.86 -2.39 -0.01 3.23 16 5 C -0.51 -26.90 8.03 25.60 0.21 -26.70 16 6 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 7 C 0.03 1.78 5.47 84.65 0.46 2.24 16 8 N -0.92 -53.03 13.96 21.45 0.30 -52.73 16 9 Si 0.91 37.42 26.55 68.60 1.82 39.25 16 10 H -0.26 -10.06 6.75 99.48 0.67 -9.38 16 11 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 12 H -0.22 -7.78 6.21 99.48 0.62 -7.16 16 13 N -0.24 -10.25 3.01 -318.04 -0.96 -11.21 16 14 N -0.26 -11.62 9.48 -48.71 -0.46 -12.08 16 15 C -0.06 -2.48 6.98 42.08 0.29 -2.18 16 16 C 0.63 25.70 7.90 86.75 0.68 26.39 16 17 O -0.56 -23.98 16.32 -3.94 -0.06 -24.04 16 18 N -0.62 -21.62 3.37 -832.00 -2.81 -24.42 16 19 C 0.13 4.37 5.65 85.51 0.48 4.85 16 20 C -0.17 -3.92 10.87 26.23 0.29 -3.63 16 21 C -0.15 -3.02 10.87 26.23 0.29 -2.73 16 22 C 0.12 3.15 7.00 85.50 0.60 3.75 16 23 C -0.21 -8.31 6.07 -20.04 -0.12 -8.43 16 24 C -0.01 -0.53 6.78 41.68 0.28 -0.25 16 25 C -0.09 -2.56 5.78 30.05 0.17 -2.39 16 26 C 0.07 1.73 6.53 86.48 0.56 2.30 16 27 N -0.67 -17.70 6.88 -516.22 -3.55 -21.25 16 28 C 0.15 5.00 6.23 85.34 0.53 5.53 16 29 H 0.06 1.70 7.65 -2.38 -0.02 1.69 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.05 1.88 7.41 -2.39 -0.02 1.86 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 34 H 0.27 14.72 8.31 -92.70 -0.77 13.95 16 35 H 0.06 2.22 7.83 -2.39 -0.02 2.20 16 36 H 0.07 2.48 7.82 -2.39 -0.02 2.46 16 37 H 0.17 3.01 8.06 -2.91 -0.02 2.99 16 38 H 0.19 2.12 8.06 -2.91 -0.02 2.09 16 39 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 40 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.07 2.30 7.09 -2.39 -0.02 2.28 16 43 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.06 1.77 8.07 -2.39 -0.02 1.75 16 45 H 0.35 8.09 8.79 -89.69 -0.79 7.30 16 46 H 0.08 2.83 7.75 -2.39 -0.02 2.81 16 47 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -68.73 375.37 0.06 -68.67 By element: Atomic # 1 Polarization: 36.69 SS G_CDS: 0.07 Total: 36.77 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 5.71 Total: 1.04 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -7.48 Total: -121.69 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.06 Total: -24.04 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 1.82 Total: 39.25 kcal Total: -68.73 0.06 -68.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167878.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.115 kcal (2) G-P(sol) polarization free energy of solvation -68.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds