Wall clock time and date at job start Tue Mar 31 2020 15:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47192 * 2 1 4 4 H 1.08999 * 109.47370 * 54.99988 * 3 2 1 5 5 C 1.50699 * 109.47127 * 175.00077 * 3 2 1 6 6 H 1.08007 * 120.00268 * 120.00036 * 5 3 2 7 7 C 1.37875 * 120.00240 * 299.99867 * 5 3 2 8 8 N 1.31519 * 119.99594 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00419 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.46872 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47203 * 119.99902 * 9 7 5 12 12 H 1.48504 * 109.47134 * 240.00141 * 9 7 5 13 13 N 1.46902 * 109.47018 * 295.00137 * 3 2 1 14 14 C 1.48661 * 110.99884 * 297.47077 * 13 3 2 15 15 C 1.55232 * 103.40576 * 201.02540 * 14 13 3 16 16 C 1.53311 * 102.57029 * 36.31593 * 15 14 13 17 17 C 1.53319 * 111.57091 * 101.21983 * 16 15 14 18 18 C 1.51584 * 103.90088 * 96.62302 * 17 16 15 19 19 O 1.21284 * 124.94060 * 195.16635 * 18 17 16 20 20 N 1.34578 * 110.11314 * 15.16621 * 18 17 16 21 21 C 1.39970 * 124.34831 * 180.34874 * 20 18 17 22 22 C 1.39227 * 120.87281 * 0.02562 * 21 20 18 23 23 N 1.32274 * 119.01961 * 179.97438 * 22 21 20 24 24 C 1.31795 * 120.88491 * 0.02562 * 23 22 21 25 25 N 1.31793 * 121.93196 * 359.97438 * 24 23 22 26 26 C 1.32267 * 120.88726 * 0.02562 * 25 24 23 27 27 C 1.47091 * 111.30059 * 0.61301 * 20 18 17 28 28 C 1.48274 * 110.99980 * 180.02562 * 13 3 2 29 29 H 1.08997 * 109.47249 * 60.00057 * 1 2 3 30 30 H 1.09003 * 109.46758 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46853 * 299.99993 * 1 2 3 32 32 H 1.08999 * 109.47493 * 239.99661 * 2 1 3 33 33 H 1.09007 * 109.47253 * 120.00078 * 2 1 3 34 34 H 0.97001 * 119.99489 * 179.97438 * 8 7 5 35 35 H 1.09005 * 110.63284 * 319.50201 * 14 13 3 36 36 H 1.08995 * 110.63435 * 82.54026 * 14 13 3 37 37 H 1.09006 * 110.78801 * 278.05110 * 15 14 13 38 38 H 1.08997 * 110.79289 * 154.58818 * 15 14 13 39 39 H 1.09004 * 110.54503 * 338.01799 * 17 16 15 40 40 H 1.09001 * 110.66490 * 215.28334 * 17 16 15 41 41 H 1.08001 * 120.49256 * 359.96352 * 22 21 20 42 42 H 1.08006 * 119.03258 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.49064 * 180.02562 * 26 25 24 44 44 H 1.08998 * 110.30157 * 102.83408 * 27 20 18 45 45 H 1.08996 * 110.29852 * 224.98123 * 27 20 18 46 46 H 1.09007 * 110.04743 * 26.32698 * 28 13 3 47 47 H 1.08994 * 110.08813 * 264.88249 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3366 2.1728 9 14 6.0049 0.8812 1.3818 10 1 6.5987 1.5462 0.1941 11 1 6.3990 1.6167 2.6102 12 1 6.4970 -0.5176 1.4629 13 7 1.6513 2.0993 -1.2552 14 6 2.2763 1.4264 -2.4243 15 6 2.2292 2.5125 -3.5323 16 6 2.4849 3.8032 -2.7454 17 6 3.9356 4.2764 -2.8945 18 6 3.8695 5.3105 -4.0009 19 8 4.8275 5.7412 -4.6073 20 7 2.5931 5.6810 -4.2123 21 6 2.1911 6.6164 -5.1729 22 6 3.1240 7.2406 -5.9966 23 7 2.7035 8.1184 -6.8922 24 6 1.4223 8.4042 -7.0097 25 7 0.5086 7.8352 -6.2492 26 6 0.8476 6.9469 -5.3297 27 6 1.6755 4.9815 -3.3001 28 6 2.1302 3.5021 -1.2914 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 3.8294 -0.0618 2.9494 35 1 3.3068 1.1488 -2.2021 36 1 1.6969 0.5515 -2.7190 37 1 1.2488 2.5374 -4.0082 38 1 3.0145 2.3472 -4.2699 39 1 4.5806 3.4468 -3.1844 40 1 4.2896 4.7293 -1.9684 41 1 4.1755 7.0116 -5.9054 42 1 1.1120 9.1260 -7.7509 43 1 0.0935 6.4843 -4.7103 44 1 1.3664 5.6449 -2.4924 45 1 0.8049 4.6172 -3.8454 46 1 3.0127 3.6120 -0.6610 47 1 1.3429 4.1752 -0.9522 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172271.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:54 Heat of formation + Delta-G solvation = 30.612993 kcal Electronic energy + Delta-G solvation = -29013.394268 eV Core-core repulsion = 25196.442727 eV Total energy + Delta-G solvation = -3816.951541 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.88846 -40.59977 -38.63388 -36.65235 -34.80120 -33.91947 -32.67310 -31.50533 -29.93007 -29.17673 -28.33435 -26.60975 -25.41454 -24.83809 -23.66071 -22.86418 -21.52954 -20.54386 -19.52321 -19.08312 -17.99568 -17.64705 -17.47329 -16.66480 -16.21503 -15.49965 -15.19224 -15.07995 -14.76192 -14.29332 -14.13543 -13.94335 -13.77578 -13.69281 -13.28054 -13.14743 -12.81757 -12.44225 -12.27171 -12.16490 -11.79885 -11.58790 -11.28843 -11.19712 -11.08192 -11.06085 -10.98125 -10.84251 -10.65272 -10.56637 -10.45551 -10.13585 -10.03829 -9.76489 -9.58457 -9.34640 -9.19432 -8.52743 -8.47323 -7.37220 -6.11314 -4.24880 0.57179 0.79241 2.30542 2.37350 3.17599 3.27645 3.28903 3.57772 3.91272 3.97857 4.02718 4.15602 4.26259 4.29136 4.50505 4.60604 4.69010 5.05152 5.14234 5.16347 5.21000 5.26124 5.30414 5.53084 5.61558 5.67917 5.79741 5.82055 5.95273 6.07185 6.23797 6.31142 6.34553 6.38606 6.41970 6.55619 6.56662 6.58949 6.67749 6.70194 6.95061 7.07395 7.17116 7.46855 7.62531 7.71231 7.80204 7.83708 7.99982 8.06274 8.30136 8.84570 9.43036 10.88312 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018476 B = 0.003204 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.087679 B = 8738.009611 C = 9822.281824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 C 0.205 3.795 4 H 0.040 0.960 5 C -0.546 4.546 6 H 0.059 0.941 7 C 0.070 3.930 8 N -0.882 5.882 9 Si 0.884 3.116 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.512 5.512 14 C 0.041 3.959 15 C -0.113 4.113 16 C -0.076 4.076 17 C -0.137 4.137 18 C 0.522 3.478 19 O -0.512 6.512 20 N -0.553 5.553 21 C 0.073 3.927 22 C 0.111 3.889 23 N -0.492 5.492 24 C 0.252 3.748 25 N -0.493 5.493 26 C 0.111 3.889 27 C 0.109 3.891 28 C 0.053 3.947 29 H 0.047 0.953 30 H 0.025 0.975 31 H 0.039 0.961 32 H 0.031 0.969 33 H 0.092 0.908 34 H 0.262 0.738 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.193 0.807 42 H 0.196 0.804 43 H 0.171 0.829 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.073 0.927 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.104 8.752 -11.398 15.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C 0.098 3.902 4 H 0.058 0.942 5 C -0.585 4.585 6 H 0.077 0.923 7 C -0.133 4.133 8 N -0.520 5.520 9 Si 0.712 3.288 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.236 5.236 14 C -0.088 4.088 15 C -0.151 4.151 16 C -0.077 4.077 17 C -0.177 4.177 18 C 0.313 3.687 19 O -0.387 6.387 20 N -0.276 5.276 21 C -0.027 4.027 22 C -0.058 4.058 23 N -0.205 5.205 24 C -0.036 4.036 25 N -0.206 5.206 26 C -0.059 4.059 27 C -0.012 4.012 28 C -0.076 4.076 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.110 0.890 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.210 0.790 42 H 0.213 0.787 43 H 0.188 0.812 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.092 0.908 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.431 9.507 -12.218 16.406 hybrid contribution 2.116 -0.651 0.951 2.410 sum -3.314 8.856 -11.267 14.709 Atomic orbital electron populations 1.21717 0.98825 0.98500 1.00577 1.21577 0.92259 0.99040 1.02040 1.19419 0.93208 0.91365 0.86219 0.94228 1.21706 0.92618 1.38592 1.05556 0.92273 1.24902 0.97759 0.94916 0.95693 1.69878 1.34793 1.37881 1.09398 0.86672 0.86157 0.77872 0.78111 1.19815 1.20993 1.20984 1.65304 1.53417 1.00377 1.04540 1.23177 0.99839 0.95892 0.89856 1.22533 1.01444 0.93599 0.97506 1.21515 0.92834 0.94454 0.98911 1.22474 0.98633 0.98390 0.98197 1.21569 0.81172 0.82094 0.83902 1.90609 1.38802 1.57752 1.51547 1.46060 1.09616 1.38714 1.33208 1.19748 0.96359 0.93626 0.92946 1.23972 1.02012 0.90559 0.89219 1.68491 1.18772 1.14070 1.19187 1.24872 0.84481 0.97429 0.96797 1.68359 1.39028 1.08059 1.05143 1.22967 0.92690 0.94398 0.95847 1.22576 0.92740 0.93595 0.92314 1.22666 1.00426 0.93140 0.91329 0.93399 0.95595 0.94180 0.94979 0.88972 0.92836 0.91869 0.91273 0.90940 0.91721 0.86904 0.86525 0.79019 0.78709 0.81229 0.89325 0.89018 0.90838 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.80 37.16 0.36 -2.21 16 2 C -0.11 -2.38 5.15 -26.73 -0.14 -2.52 16 3 C 0.20 4.42 1.82 -68.86 -0.13 4.30 16 4 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 5 C -0.55 -12.84 6.33 -34.44 -0.22 -13.06 16 6 H 0.06 1.37 6.05 -52.48 -0.32 1.05 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.11 11.29 55.43 0.63 -22.48 16 9 Si 0.88 19.64 29.54 -169.99 -5.02 14.62 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.51 -8.94 4.77 -224.10 -1.07 -10.01 16 14 C 0.04 0.65 5.29 -1.67 -0.01 0.64 16 15 C -0.11 -1.39 6.17 -25.39 -0.16 -1.55 16 16 C -0.08 -0.90 0.84 -154.18 -0.13 -1.03 16 17 C -0.14 -1.68 5.84 -27.28 -0.16 -1.84 16 18 C 0.52 6.81 7.95 -10.64 -0.08 6.73 16 19 O -0.51 -7.98 14.88 5.55 0.08 -7.90 16 20 N -0.55 -6.21 3.15 -112.30 -0.35 -6.56 16 21 C 0.07 0.85 6.64 -83.40 -0.55 0.30 16 22 C 0.11 1.43 10.56 -16.99 -0.18 1.25 16 23 N -0.49 -6.13 10.43 -14.43 -0.15 -6.28 16 24 C 0.25 2.68 12.28 -92.15 -1.13 1.55 16 25 N -0.49 -5.48 10.43 -14.43 -0.15 -5.63 16 26 C 0.11 1.14 10.69 -16.99 -0.18 0.96 16 27 C 0.11 1.04 5.53 -3.55 -0.02 1.02 16 28 C 0.05 0.79 5.67 -3.24 -0.02 0.77 16 29 H 0.05 0.84 7.75 -51.93 -0.40 0.44 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.03 0.67 6.78 -51.93 -0.35 0.32 16 33 H 0.09 2.27 5.95 -51.93 -0.31 1.96 16 34 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 35 H 0.06 1.15 6.07 -51.93 -0.32 0.84 16 36 H 0.07 1.11 7.59 -51.93 -0.39 0.71 16 37 H 0.07 0.82 7.54 -51.93 -0.39 0.43 16 38 H 0.06 0.77 7.65 -51.93 -0.40 0.37 16 39 H 0.11 1.43 7.68 -51.93 -0.40 1.03 16 40 H 0.12 1.40 7.61 -51.93 -0.40 1.01 16 41 H 0.19 2.66 5.37 -52.49 -0.28 2.38 16 42 H 0.20 1.40 8.06 -52.48 -0.42 0.98 16 43 H 0.17 1.30 7.04 -52.49 -0.37 0.93 16 44 H 0.09 0.75 7.58 -51.93 -0.39 0.35 16 45 H 0.09 0.75 6.96 -51.93 -0.36 0.39 16 46 H 0.07 1.26 5.62 -51.93 -0.29 0.97 16 47 H 0.07 0.93 7.43 -51.93 -0.39 0.54 16 LS Contribution 363.15 15.07 5.47 5.47 Total: -1.00 -27.51 363.15 -9.98 -37.50 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.58 Total: 4.29 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -2.83 Total: -3.02 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -1.10 Total: -50.96 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.08 Total: -7.90 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -27.51 -9.98 -37.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172271.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.109 kcal (2) G-P(sol) polarization free energy of solvation -27.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds