Wall clock time and date at job start Tue Mar 31 2020 15:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47192 * 2 1 4 4 H 1.08999 * 109.47370 * 54.99988 * 3 2 1 5 5 C 1.50699 * 109.47127 * 175.00077 * 3 2 1 6 6 H 1.08007 * 120.00268 * 120.00036 * 5 3 2 7 7 C 1.37875 * 120.00240 * 299.99867 * 5 3 2 8 8 N 1.31519 * 119.99594 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00419 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.46872 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47203 * 119.99902 * 9 7 5 12 12 H 1.48504 * 109.47134 * 240.00141 * 9 7 5 13 13 N 1.46902 * 109.47018 * 295.00137 * 3 2 1 14 14 C 1.48661 * 110.99884 * 297.47077 * 13 3 2 15 15 C 1.55232 * 103.40576 * 201.02540 * 14 13 3 16 16 C 1.53311 * 102.57029 * 36.31593 * 15 14 13 17 17 C 1.53319 * 111.57091 * 101.21983 * 16 15 14 18 18 C 1.51584 * 103.90088 * 96.62302 * 17 16 15 19 19 O 1.21284 * 124.94060 * 195.16635 * 18 17 16 20 20 N 1.34578 * 110.11314 * 15.16621 * 18 17 16 21 21 C 1.39970 * 124.34831 * 180.34874 * 20 18 17 22 22 C 1.39227 * 120.87281 * 0.02562 * 21 20 18 23 23 N 1.32274 * 119.01961 * 179.97438 * 22 21 20 24 24 C 1.31795 * 120.88491 * 0.02562 * 23 22 21 25 25 N 1.31793 * 121.93196 * 359.97438 * 24 23 22 26 26 C 1.32267 * 120.88726 * 0.02562 * 25 24 23 27 27 C 1.47091 * 111.30059 * 0.61301 * 20 18 17 28 28 C 1.48274 * 110.99980 * 180.02562 * 13 3 2 29 29 H 1.08997 * 109.47249 * 60.00057 * 1 2 3 30 30 H 1.09003 * 109.46758 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46853 * 299.99993 * 1 2 3 32 32 H 1.08999 * 109.47493 * 239.99661 * 2 1 3 33 33 H 1.09007 * 109.47253 * 120.00078 * 2 1 3 34 34 H 0.97001 * 119.99489 * 179.97438 * 8 7 5 35 35 H 1.09005 * 110.63284 * 319.50201 * 14 13 3 36 36 H 1.08995 * 110.63435 * 82.54026 * 14 13 3 37 37 H 1.09006 * 110.78801 * 278.05110 * 15 14 13 38 38 H 1.08997 * 110.79289 * 154.58818 * 15 14 13 39 39 H 1.09004 * 110.54503 * 338.01799 * 17 16 15 40 40 H 1.09001 * 110.66490 * 215.28334 * 17 16 15 41 41 H 1.08001 * 120.49256 * 359.96352 * 22 21 20 42 42 H 1.08006 * 119.03258 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.49064 * 180.02562 * 26 25 24 44 44 H 1.08998 * 110.30157 * 102.83408 * 27 20 18 45 45 H 1.08996 * 110.29852 * 224.98123 * 27 20 18 46 46 H 1.09007 * 110.04743 * 26.32698 * 28 13 3 47 47 H 1.08994 * 110.08813 * 264.88249 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3366 2.1728 9 14 6.0049 0.8812 1.3818 10 1 6.5987 1.5462 0.1941 11 1 6.3990 1.6167 2.6102 12 1 6.4970 -0.5176 1.4629 13 7 1.6513 2.0993 -1.2552 14 6 2.2763 1.4264 -2.4243 15 6 2.2292 2.5125 -3.5323 16 6 2.4849 3.8032 -2.7454 17 6 3.9356 4.2764 -2.8945 18 6 3.8695 5.3105 -4.0009 19 8 4.8275 5.7412 -4.6073 20 7 2.5931 5.6810 -4.2123 21 6 2.1911 6.6164 -5.1729 22 6 3.1240 7.2406 -5.9966 23 7 2.7035 8.1184 -6.8922 24 6 1.4223 8.4042 -7.0097 25 7 0.5086 7.8352 -6.2492 26 6 0.8476 6.9469 -5.3297 27 6 1.6755 4.9815 -3.3001 28 6 2.1302 3.5021 -1.2914 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 3.8294 -0.0618 2.9494 35 1 3.3068 1.1488 -2.2021 36 1 1.6969 0.5515 -2.7190 37 1 1.2488 2.5374 -4.0082 38 1 3.0145 2.3472 -4.2699 39 1 4.5806 3.4468 -3.1844 40 1 4.2896 4.7293 -1.9684 41 1 4.1755 7.0116 -5.9054 42 1 1.1120 9.1260 -7.7509 43 1 0.0935 6.4843 -4.7103 44 1 1.3664 5.6449 -2.4924 45 1 0.8049 4.6172 -3.8454 46 1 3.0127 3.6120 -0.6610 47 1 1.3429 4.1752 -0.9522 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172271.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:53 Heat of formation + Delta-G solvation = 14.725502 kcal Electronic energy + Delta-G solvation = -29014.083202 eV Core-core repulsion = 25196.442727 eV Total energy + Delta-G solvation = -3817.640475 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.81071 -41.53134 -39.85796 -37.81695 -36.10705 -34.77469 -34.13780 -33.03959 -31.10046 -30.30339 -29.33223 -28.15752 -26.57754 -25.73136 -24.91832 -24.12791 -22.93295 -21.51602 -20.76269 -20.47841 -18.83127 -18.56175 -18.47740 -18.24537 -17.25428 -17.03359 -16.24467 -16.19108 -15.91828 -15.67097 -15.17184 -15.00947 -14.78079 -14.66728 -14.57818 -14.43643 -14.19178 -13.87390 -13.47208 -13.41980 -13.10015 -12.91060 -12.81375 -12.58459 -12.43164 -12.23796 -12.15142 -12.05481 -11.94824 -11.78800 -11.67937 -11.54628 -11.51458 -11.19335 -11.08832 -10.89732 -10.37944 -10.23163 -9.39866 -8.91308 -7.99381 -6.19384 -0.28139 -0.07010 1.33159 1.37232 1.43395 1.47901 1.49378 2.42390 2.73599 3.01556 3.13000 3.20815 3.22505 3.28285 3.39548 3.49813 3.56385 3.81970 3.89729 4.09542 4.29232 4.44842 4.48519 4.58496 4.63571 4.68185 4.70653 4.78614 4.81196 4.83746 4.97709 5.02473 5.05901 5.14320 5.19947 5.24649 5.34528 5.39738 5.46534 5.51337 5.54551 5.65468 5.68444 5.84947 5.85523 6.11417 6.22655 6.43116 6.59062 6.74391 7.00308 7.03147 7.50908 8.95952 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018476 B = 0.003204 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.087679 B = 8738.009611 C = 9822.281824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.107 4.107 3 C 0.213 3.787 4 H 0.006 0.994 5 C -0.539 4.539 6 H 0.060 0.940 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 0.935 3.065 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.509 5.509 14 C 0.039 3.961 15 C -0.101 4.101 16 C -0.065 4.065 17 C -0.135 4.135 18 C 0.521 3.479 19 O -0.544 6.544 20 N -0.545 5.545 21 C 0.064 3.936 22 C 0.095 3.905 23 N -0.512 5.512 24 C 0.254 3.746 25 N -0.502 5.502 26 C 0.125 3.875 27 C 0.113 3.887 28 C 0.053 3.947 29 H 0.062 0.938 30 H 0.040 0.960 31 H 0.032 0.968 32 H 0.030 0.970 33 H 0.057 0.943 34 H 0.258 0.742 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.176 0.824 42 H 0.226 0.774 43 H 0.203 0.797 44 H 0.108 0.892 45 H 0.120 0.880 46 H 0.046 0.954 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.002 9.794 -13.071 17.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.146 4.146 3 C 0.105 3.895 4 H 0.024 0.976 5 C -0.578 4.578 6 H 0.078 0.922 7 C -0.176 4.176 8 N -0.551 5.551 9 Si 0.762 3.238 10 H -0.192 1.192 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.232 5.232 14 C -0.089 4.089 15 C -0.139 4.139 16 C -0.066 4.066 17 C -0.175 4.175 18 C 0.312 3.688 19 O -0.422 6.422 20 N -0.267 5.267 21 C -0.036 4.036 22 C -0.073 4.073 23 N -0.226 5.226 24 C -0.034 4.034 25 N -0.215 5.215 26 C -0.045 4.045 27 C -0.008 4.008 28 C -0.075 4.075 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.124 0.876 40 H 0.134 0.866 41 H 0.193 0.807 42 H 0.242 0.758 43 H 0.219 0.781 44 H 0.126 0.874 45 H 0.138 0.862 46 H 0.064 0.936 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.341 10.561 -13.908 18.944 hybrid contribution 2.672 -0.935 1.434 3.173 sum -4.669 9.626 -12.475 16.434 Atomic orbital electron populations 1.21576 0.96321 0.99612 1.00856 1.21429 0.94467 0.98476 1.00208 1.19133 0.91734 0.91424 0.87227 0.97598 1.22016 0.93993 1.36950 1.04867 0.92198 1.25522 1.00828 0.95352 0.95946 1.70006 1.35889 1.39283 1.09913 0.85869 0.82610 0.77384 0.77918 1.19190 1.21283 1.21407 1.65222 1.53366 1.01530 1.03127 1.23158 0.97954 0.97254 0.90564 1.22482 1.03086 0.91946 0.96344 1.21312 0.92935 0.95483 0.96918 1.22430 0.99016 0.98093 0.97998 1.21611 0.81505 0.82004 0.83653 1.90604 1.40025 1.58886 1.52666 1.45987 1.09138 1.38463 1.33135 1.19742 0.96775 0.93983 0.93062 1.23799 1.01813 0.91455 0.90214 1.68500 1.19888 1.14549 1.19623 1.25503 0.83794 0.97232 0.96825 1.68475 1.38990 1.08466 1.05551 1.23472 0.92521 0.93308 0.95210 1.22700 0.92447 0.92716 0.92912 1.22677 0.99903 0.91926 0.93042 0.91930 0.94094 0.94921 0.95089 0.92421 0.93225 0.94686 0.91187 0.88574 0.90996 0.87606 0.86624 0.80749 0.75778 0.78060 0.87351 0.86233 0.93552 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 9.80 71.98 0.71 -3.84 16 2 C -0.11 -4.65 5.15 30.59 0.16 -4.49 16 3 C 0.21 9.29 1.82 44.17 0.08 9.37 16 4 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 5 C -0.54 -25.80 6.33 25.60 0.16 -25.64 16 6 H 0.06 2.81 6.05 -2.91 -0.02 2.79 16 7 C 0.02 1.19 5.29 84.65 0.45 1.63 16 8 N -0.91 -49.25 11.29 21.45 0.24 -49.01 16 9 Si 0.93 41.08 29.54 68.60 2.03 43.11 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 12 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 13 N -0.51 -17.14 4.77 -862.93 -4.12 -21.26 16 14 C 0.04 1.19 5.29 86.73 0.46 1.65 16 15 C -0.10 -2.19 6.17 31.46 0.19 -2.00 16 16 C -0.07 -1.38 0.84 -51.97 -0.04 -1.43 16 17 C -0.14 -3.18 5.84 30.24 0.18 -3.00 16 18 C 0.52 13.03 7.95 87.97 0.70 13.73 16 19 O -0.54 -17.05 14.88 -3.04 -0.05 -17.10 16 20 N -0.54 -10.80 3.15 -627.72 -1.98 -12.78 16 21 C 0.06 1.33 6.64 38.32 0.25 1.59 16 22 C 0.10 2.37 10.56 84.86 0.90 3.27 16 23 N -0.51 -12.12 10.43 -199.58 -2.08 -14.20 16 24 C 0.25 4.78 12.28 180.88 2.22 7.00 16 25 N -0.50 -9.50 10.43 -199.57 -2.08 -11.58 16 26 C 0.12 2.10 10.69 84.87 0.91 3.01 16 27 C 0.11 1.69 5.53 86.38 0.48 2.17 16 28 C 0.05 1.49 5.67 85.93 0.49 1.98 16 29 H 0.06 2.06 7.75 -2.39 -0.02 2.04 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.03 1.31 6.78 -2.39 -0.02 1.29 16 33 H 0.06 2.92 5.95 -2.38 -0.01 2.91 16 34 H 0.26 13.51 8.31 -92.71 -0.77 12.74 16 35 H 0.03 1.27 6.07 -2.38 -0.01 1.26 16 36 H 0.07 2.12 7.59 -2.39 -0.02 2.10 16 37 H 0.10 1.71 7.54 -2.38 -0.02 1.69 16 38 H 0.07 1.52 7.65 -2.39 -0.02 1.50 16 39 H 0.11 2.64 7.68 -2.39 -0.02 2.62 16 40 H 0.12 2.74 7.61 -2.39 -0.02 2.72 16 41 H 0.18 4.94 5.37 -2.91 -0.02 4.93 16 42 H 0.23 2.56 8.06 -2.91 -0.02 2.54 16 43 H 0.20 1.98 7.04 -2.91 -0.02 1.96 16 44 H 0.11 1.31 7.58 -2.39 -0.02 1.29 16 45 H 0.12 1.24 6.96 -2.39 -0.02 1.22 16 46 H 0.05 1.58 5.62 -2.38 -0.01 1.57 16 47 H 0.09 2.12 7.43 -2.39 -0.02 2.11 16 Total: -1.00 -61.71 363.15 1.24 -60.47 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.99 Total: 17.38 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 8.28 Total: 4.98 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -10.02 Total: -108.83 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.05 Total: -17.10 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -61.71 1.24 -60.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172271.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.191 kcal (2) G-P(sol) polarization free energy of solvation -61.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds