Wall clock time and date at job start Tue Mar 31 2020 15:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47327 * 2 1 4 4 H 1.08997 * 109.47670 * 55.07183 * 3 2 1 5 5 C 1.50700 * 109.47046 * 175.07478 * 3 2 1 6 6 H 1.08005 * 120.00042 * 119.99991 * 5 3 2 7 7 C 1.37878 * 119.99712 * 300.26324 * 5 3 2 8 8 N 1.31517 * 119.99918 * 179.72557 * 7 5 3 9 9 Si 1.86795 * 119.99989 * 359.73404 * 7 5 3 10 10 H 1.48507 * 109.47085 * 89.99514 * 9 7 5 11 11 H 1.48507 * 109.47188 * 209.99213 * 9 7 5 12 12 H 1.48499 * 109.47207 * 329.99230 * 9 7 5 13 13 N 1.46910 * 109.46792 * 295.07175 * 3 2 1 14 14 C 1.47581 * 110.99969 * 175.89519 * 13 3 2 15 15 C 1.54640 * 107.30993 * 123.18780 * 14 13 3 16 16 C 1.53377 * 102.80901 * 20.66395 * 15 14 13 17 17 C 1.52913 * 112.29900 * 204.64902 * 16 15 14 18 18 C 1.51681 * 103.78892 * 261.45031 * 17 16 15 19 19 O 1.21287 * 124.94086 * 165.15583 * 18 17 16 20 20 N 1.34633 * 110.11660 * 345.16898 * 18 17 16 21 21 C 1.39972 * 124.34272 * 179.65372 * 20 18 17 22 22 C 1.39240 * 120.86761 * 179.74827 * 21 20 18 23 23 N 1.32269 * 119.01215 * 179.76755 * 22 21 20 24 24 C 1.31796 * 120.89565 * 0.52112 * 23 22 21 25 25 N 1.31793 * 121.92093 * 359.72723 * 24 23 22 26 26 C 1.32266 * 120.89642 * 0.02562 * 25 24 23 27 27 C 1.47184 * 111.30612 * 359.68317 * 20 18 17 28 28 C 1.48185 * 110.99636 * 296.86725 * 13 3 2 29 29 H 1.08997 * 109.47433 * 185.07188 * 1 2 3 30 30 H 1.09002 * 109.47105 * 305.07495 * 1 2 3 31 31 H 1.09007 * 109.46816 * 65.06812 * 1 2 3 32 32 H 1.08994 * 109.47247 * 239.99185 * 2 1 3 33 33 H 1.09005 * 109.46366 * 119.99460 * 2 1 3 34 34 H 0.96993 * 120.00144 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.87603 * 242.62206 * 14 13 3 36 36 H 1.09002 * 109.87439 * 3.61612 * 14 13 3 37 37 H 1.08998 * 110.74504 * 138.99610 * 15 14 13 38 38 H 1.09006 * 110.74248 * 262.33545 * 15 14 13 39 39 H 1.08994 * 110.55828 * 20.02764 * 17 16 15 40 40 H 1.08997 * 110.55930 * 142.86753 * 17 16 15 41 41 H 1.07994 * 120.49008 * 359.97438 * 22 21 20 42 42 H 1.07998 * 119.03985 * 179.75143 * 24 23 22 43 43 H 1.08002 * 120.49732 * 180.02562 * 26 25 24 44 44 H 1.09000 * 110.31969 * 256.53640 * 27 20 18 45 45 H 1.09007 * 110.32063 * 134.34451 * 27 20 18 46 46 H 1.09002 * 110.41520 * 334.21312 * 28 13 3 47 47 H 1.08998 * 110.40639 * 96.64175 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6065 1.9812 0.8425 5 6 3.5421 1.4441 0.1220 6 1 4.1465 1.8890 -0.6547 7 6 4.1450 0.8729 1.2226 8 7 5.4560 0.8695 1.3265 9 14 3.0996 0.1035 2.5659 10 1 2.8723 -1.3309 2.2558 11 1 3.8017 0.2229 3.8690 12 1 1.7938 0.8067 2.6409 13 7 1.6499 2.0997 -1.2546 14 6 2.0401 3.5230 -1.2496 15 6 2.9419 3.7572 -2.4839 16 6 2.5811 2.5789 -3.3971 17 6 3.7079 2.2338 -4.3714 18 6 3.2933 2.9174 -5.6604 19 8 4.0227 3.1107 -6.6099 20 7 1.9978 3.2786 -5.5970 21 6 1.3108 3.9378 -6.6230 22 6 -0.0332 4.2733 -6.4820 23 7 -0.6453 4.9001 -7.4730 24 6 -0.0032 5.1972 -8.5850 25 7 1.2671 4.8922 -8.7589 26 6 1.9516 4.2695 -7.8138 27 6 1.3972 2.8919 -4.3102 28 6 2.2830 1.4383 -2.4197 29 1 -0.3634 -1.0236 0.0908 30 1 -0.3633 0.5906 0.8411 31 1 -0.3633 0.4332 -0.9320 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 5.8801 0.4673 2.1005 35 1 1.1517 4.1511 -1.3151 36 1 2.5901 3.7532 -0.3371 37 1 2.7007 4.7056 -2.9638 38 1 3.9950 3.7211 -2.2050 39 1 4.6576 2.6324 -4.0150 40 1 3.7737 1.1552 -4.5140 41 1 -0.5669 4.0285 -5.5757 42 1 -0.5333 5.7058 -9.3766 43 1 2.9925 4.0230 -7.9630 44 1 0.7713 2.0083 -4.4349 45 1 0.8122 3.7165 -3.9025 46 1 3.2069 0.9433 -2.1203 47 1 1.5958 0.7220 -2.8699 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172274.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:03 Heat of formation + Delta-G solvation = 36.291542 kcal Electronic energy + Delta-G solvation = -29184.514538 eV Core-core repulsion = 25367.809237 eV Total energy + Delta-G solvation = -3816.705301 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.87936 -40.60686 -38.78255 -36.67025 -34.88898 -33.90070 -32.73075 -32.02262 -30.10234 -29.01368 -28.19112 -27.06351 -25.79430 -24.84334 -23.67180 -22.82131 -21.35233 -20.56106 -19.78315 -19.25008 -17.96917 -17.70286 -17.49630 -16.89996 -16.30842 -15.57786 -15.27822 -15.07375 -14.81625 -14.33961 -14.10296 -13.97826 -13.73440 -13.68955 -13.54547 -13.07996 -12.98504 -12.64948 -12.58047 -12.37464 -11.82853 -11.78496 -11.60646 -11.24293 -11.22249 -11.06885 -11.05651 -10.95107 -10.76417 -10.55940 -10.48190 -10.14770 -10.08670 -9.83290 -9.62711 -9.33689 -9.29886 -8.68482 -8.50842 -7.41749 -6.24353 -4.25833 0.58902 0.81159 2.31415 2.39313 3.16680 3.29087 3.30072 3.59642 3.92585 3.99374 4.04391 4.19115 4.26453 4.29126 4.47020 4.58338 4.70706 5.02381 5.08039 5.12609 5.20001 5.27275 5.33681 5.49423 5.59601 5.70888 5.77637 5.80854 5.87816 5.90811 5.93545 6.08654 6.11175 6.26548 6.35051 6.43495 6.47987 6.54407 6.57835 6.59562 6.64447 6.72134 6.77680 6.95490 7.10219 7.40847 7.72276 7.83720 7.85521 7.92393 8.29746 8.76438 9.39077 10.87841 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.022654 B = 0.003130 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.704542 B = 8944.130338 C = 9631.054893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.121 4.121 3 C 0.175 3.825 4 H 0.040 0.960 5 C -0.547 4.547 6 H 0.079 0.921 7 C 0.076 3.924 8 N -0.895 5.895 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.517 5.517 14 C 0.050 3.950 15 C -0.122 4.122 16 C -0.080 4.080 17 C -0.135 4.135 18 C 0.522 3.478 19 O -0.512 6.512 20 N -0.553 5.553 21 C 0.073 3.927 22 C 0.111 3.889 23 N -0.493 5.493 24 C 0.252 3.748 25 N -0.493 5.493 26 C 0.111 3.889 27 C 0.116 3.884 28 C 0.060 3.940 29 H 0.032 0.968 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.265 0.735 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.171 0.829 42 H 0.196 0.804 43 H 0.193 0.807 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.788 4.163 -11.613 15.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.159 4.159 3 C 0.067 3.933 4 H 0.058 0.942 5 C -0.586 4.586 6 H 0.097 0.903 7 C -0.128 4.128 8 N -0.532 5.532 9 Si 0.716 3.284 10 H -0.205 1.205 11 H -0.227 1.227 12 H -0.189 1.189 13 N -0.240 5.240 14 C -0.078 4.078 15 C -0.161 4.161 16 C -0.081 4.081 17 C -0.175 4.175 18 C 0.312 3.688 19 O -0.387 6.387 20 N -0.277 5.277 21 C -0.027 4.027 22 C -0.058 4.058 23 N -0.206 5.206 24 C -0.036 4.036 25 N -0.206 5.206 26 C -0.058 4.058 27 C -0.005 4.005 28 C -0.068 4.068 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.188 0.812 42 H 0.213 0.787 43 H 0.210 0.790 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.103 0.897 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.271 4.641 -12.743 17.012 hybrid contribution 0.877 -0.892 1.680 2.095 sum -9.393 3.749 -11.063 14.989 Atomic orbital electron populations 1.21727 0.97340 0.99280 1.01650 1.21909 0.94047 0.99258 1.00697 1.19927 0.94651 0.90579 0.88134 0.94250 1.21604 0.90334 1.39224 1.07424 0.90317 1.24981 0.94685 0.95241 0.97863 1.69898 1.08779 1.44574 1.29918 0.86881 0.80693 0.79859 0.80960 1.20547 1.22650 1.18864 1.64001 1.55331 1.01243 1.03453 1.22711 0.96694 0.90676 0.97762 1.22634 1.01688 0.95894 0.95844 1.21459 0.92812 0.99093 0.94749 1.22221 1.00926 1.02966 0.91369 1.21562 0.80311 0.77312 0.89576 1.90610 1.55797 1.55175 1.37142 1.46120 1.11631 1.54202 1.15730 1.19750 0.94500 0.97532 0.90895 1.22978 0.89762 0.94607 0.98496 1.68359 1.39318 1.11551 1.01370 1.24868 0.88175 0.96130 0.94419 1.68480 1.09272 1.11360 1.31446 1.23969 1.02159 0.92670 0.86978 1.22285 0.96483 1.01877 0.79902 1.22822 1.00141 0.94210 0.89670 0.94848 0.93818 0.92202 0.92406 0.93500 0.92551 0.92263 0.91096 0.91797 0.90143 0.86703 0.86631 0.81204 0.78727 0.79018 0.89252 0.88979 0.89709 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.74 37.16 0.36 -1.92 16 2 C -0.12 -2.31 4.82 -26.73 -0.13 -2.44 16 3 C 0.18 3.51 1.17 -68.86 -0.08 3.43 16 4 H 0.04 0.86 7.20 -51.93 -0.37 0.49 16 5 C -0.55 -13.10 6.94 -34.44 -0.24 -13.34 16 6 H 0.08 2.02 6.86 -52.48 -0.36 1.66 16 7 C 0.08 1.97 5.45 -17.82 -0.10 1.87 16 8 N -0.89 -25.20 13.96 55.43 0.77 -24.42 16 9 Si 0.89 20.36 24.41 -169.99 -4.15 16.21 16 10 H -0.28 -6.31 6.82 56.52 0.39 -5.92 16 11 H -0.30 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 13 N -0.52 -8.40 4.73 -225.20 -1.06 -9.46 16 14 C 0.05 0.75 6.29 -2.59 -0.02 0.74 16 15 C -0.12 -1.61 5.74 -25.67 -0.15 -1.75 16 16 C -0.08 -0.95 0.73 -154.42 -0.11 -1.06 16 17 C -0.13 -1.57 6.05 -27.44 -0.17 -1.74 16 18 C 0.52 6.70 7.96 -10.57 -0.08 6.61 16 19 O -0.51 -7.86 14.88 5.55 0.08 -7.78 16 20 N -0.55 -6.23 3.16 -112.49 -0.35 -6.59 16 21 C 0.07 0.86 6.65 -83.40 -0.55 0.30 16 22 C 0.11 1.17 10.69 -16.99 -0.18 0.99 16 23 N -0.49 -5.55 10.43 -14.43 -0.15 -5.70 16 24 C 0.25 2.70 12.28 -92.15 -1.13 1.57 16 25 N -0.49 -6.16 10.43 -14.43 -0.15 -6.31 16 26 C 0.11 1.43 10.56 -16.99 -0.18 1.25 16 27 C 0.12 1.14 5.53 -3.79 -0.02 1.12 16 28 C 0.06 0.86 3.99 -3.05 -0.01 0.85 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.88 7.89 -51.92 -0.41 0.47 16 32 H 0.06 1.07 7.09 -51.93 -0.37 0.70 16 33 H 0.05 0.98 3.19 -51.93 -0.17 0.82 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.27 7.03 -51.93 -0.36 0.91 16 37 H 0.06 0.75 7.97 -51.93 -0.41 0.33 16 38 H 0.08 1.20 7.80 -51.93 -0.40 0.79 16 39 H 0.11 1.39 7.66 -51.93 -0.40 0.99 16 40 H 0.12 1.24 7.95 -51.93 -0.41 0.83 16 41 H 0.17 1.37 7.06 -52.49 -0.37 1.00 16 42 H 0.20 1.42 8.06 -52.49 -0.42 0.99 16 43 H 0.19 2.65 5.37 -52.49 -0.28 2.37 16 44 H 0.09 0.79 7.65 -51.93 -0.40 0.40 16 45 H 0.09 0.83 7.35 -51.93 -0.38 0.45 16 46 H 0.08 1.49 5.99 -51.93 -0.31 1.18 16 47 H 0.07 0.90 7.69 -51.93 -0.40 0.50 16 LS Contribution 359.57 15.07 5.42 5.42 Total: -1.00 -28.73 359.57 -9.07 -37.80 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.69 Total: 4.34 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -2.79 Total: -3.51 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: -0.95 Total: -52.49 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.08 Total: -7.78 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.15 Total: 16.21 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.73 -9.07 -37.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172274.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.096 kcal (2) G-P(sol) polarization free energy of solvation -28.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds