Wall clock time and date at job start Tue Mar 31 2020 15:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47327 * 2 1 4 4 H 1.08997 * 109.47670 * 55.07183 * 3 2 1 5 5 C 1.50700 * 109.47046 * 175.07478 * 3 2 1 6 6 H 1.08005 * 120.00042 * 119.99991 * 5 3 2 7 7 C 1.37878 * 119.99712 * 300.26324 * 5 3 2 8 8 N 1.31517 * 119.99918 * 179.72557 * 7 5 3 9 9 Si 1.86795 * 119.99989 * 359.73404 * 7 5 3 10 10 H 1.48507 * 109.47085 * 89.99514 * 9 7 5 11 11 H 1.48507 * 109.47188 * 209.99213 * 9 7 5 12 12 H 1.48499 * 109.47207 * 329.99230 * 9 7 5 13 13 N 1.46910 * 109.46792 * 295.07175 * 3 2 1 14 14 C 1.47581 * 110.99969 * 175.89519 * 13 3 2 15 15 C 1.54640 * 107.30993 * 123.18780 * 14 13 3 16 16 C 1.53377 * 102.80901 * 20.66395 * 15 14 13 17 17 C 1.52913 * 112.29900 * 204.64902 * 16 15 14 18 18 C 1.51681 * 103.78892 * 261.45031 * 17 16 15 19 19 O 1.21287 * 124.94086 * 165.15583 * 18 17 16 20 20 N 1.34633 * 110.11660 * 345.16898 * 18 17 16 21 21 C 1.39972 * 124.34272 * 179.65372 * 20 18 17 22 22 C 1.39240 * 120.86761 * 179.74827 * 21 20 18 23 23 N 1.32269 * 119.01215 * 179.76755 * 22 21 20 24 24 C 1.31796 * 120.89565 * 0.52112 * 23 22 21 25 25 N 1.31793 * 121.92093 * 359.72723 * 24 23 22 26 26 C 1.32266 * 120.89642 * 0.02562 * 25 24 23 27 27 C 1.47184 * 111.30612 * 359.68317 * 20 18 17 28 28 C 1.48185 * 110.99636 * 296.86725 * 13 3 2 29 29 H 1.08997 * 109.47433 * 185.07188 * 1 2 3 30 30 H 1.09002 * 109.47105 * 305.07495 * 1 2 3 31 31 H 1.09007 * 109.46816 * 65.06812 * 1 2 3 32 32 H 1.08994 * 109.47247 * 239.99185 * 2 1 3 33 33 H 1.09005 * 109.46366 * 119.99460 * 2 1 3 34 34 H 0.96993 * 120.00144 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.87603 * 242.62206 * 14 13 3 36 36 H 1.09002 * 109.87439 * 3.61612 * 14 13 3 37 37 H 1.08998 * 110.74504 * 138.99610 * 15 14 13 38 38 H 1.09006 * 110.74248 * 262.33545 * 15 14 13 39 39 H 1.08994 * 110.55828 * 20.02764 * 17 16 15 40 40 H 1.08997 * 110.55930 * 142.86753 * 17 16 15 41 41 H 1.07994 * 120.49008 * 359.97438 * 22 21 20 42 42 H 1.07998 * 119.03985 * 179.75143 * 24 23 22 43 43 H 1.08002 * 120.49732 * 180.02562 * 26 25 24 44 44 H 1.09000 * 110.31969 * 256.53640 * 27 20 18 45 45 H 1.09007 * 110.32063 * 134.34451 * 27 20 18 46 46 H 1.09002 * 110.41520 * 334.21312 * 28 13 3 47 47 H 1.08998 * 110.40639 * 96.64175 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6065 1.9812 0.8425 5 6 3.5421 1.4441 0.1220 6 1 4.1465 1.8890 -0.6547 7 6 4.1450 0.8729 1.2226 8 7 5.4560 0.8695 1.3265 9 14 3.0996 0.1035 2.5659 10 1 2.8723 -1.3309 2.2558 11 1 3.8017 0.2229 3.8690 12 1 1.7938 0.8067 2.6409 13 7 1.6499 2.0997 -1.2546 14 6 2.0401 3.5230 -1.2496 15 6 2.9419 3.7572 -2.4839 16 6 2.5811 2.5789 -3.3971 17 6 3.7079 2.2338 -4.3714 18 6 3.2933 2.9174 -5.6604 19 8 4.0227 3.1107 -6.6099 20 7 1.9978 3.2786 -5.5970 21 6 1.3108 3.9378 -6.6230 22 6 -0.0332 4.2733 -6.4820 23 7 -0.6453 4.9001 -7.4730 24 6 -0.0032 5.1972 -8.5850 25 7 1.2671 4.8922 -8.7589 26 6 1.9516 4.2695 -7.8138 27 6 1.3972 2.8919 -4.3102 28 6 2.2830 1.4383 -2.4197 29 1 -0.3634 -1.0236 0.0908 30 1 -0.3633 0.5906 0.8411 31 1 -0.3633 0.4332 -0.9320 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 5.8801 0.4673 2.1005 35 1 1.1517 4.1511 -1.3151 36 1 2.5901 3.7532 -0.3371 37 1 2.7007 4.7056 -2.9638 38 1 3.9950 3.7211 -2.2050 39 1 4.6576 2.6324 -4.0150 40 1 3.7737 1.1552 -4.5140 41 1 -0.5669 4.0285 -5.5757 42 1 -0.5333 5.7058 -9.3766 43 1 2.9925 4.0230 -7.9630 44 1 0.7713 2.0083 -4.4349 45 1 0.8122 3.7165 -3.9025 46 1 3.2069 0.9433 -2.1203 47 1 1.5958 0.7220 -2.8699 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172274.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:02 Heat of formation + Delta-G solvation = 17.679052 kcal Electronic energy + Delta-G solvation = -29185.321636 eV Core-core repulsion = 25367.809237 eV Total energy + Delta-G solvation = -3817.512399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.81447 -41.55167 -39.98958 -37.82719 -36.12495 -34.76582 -34.21706 -33.56952 -31.12627 -30.20349 -29.29983 -28.50481 -26.89927 -25.72953 -24.68342 -24.33001 -22.65762 -21.52704 -21.04572 -20.58746 -18.86824 -18.75847 -18.51626 -18.36649 -17.27569 -17.10381 -16.42903 -16.16093 -15.84646 -15.71428 -15.23267 -15.04759 -14.95911 -14.69728 -14.56660 -14.44301 -14.19342 -14.05186 -13.84428 -13.62320 -13.26718 -12.98694 -12.78135 -12.67009 -12.52014 -12.29227 -12.09038 -12.07529 -11.93987 -11.87367 -11.72868 -11.50567 -11.35204 -11.23720 -11.14550 -10.99556 -10.62366 -10.22131 -9.39108 -8.86429 -8.26318 -6.28024 -0.27271 -0.06183 1.32478 1.34052 1.39226 1.47248 1.48845 2.34473 2.74463 3.00985 3.10766 3.13458 3.22856 3.25300 3.38724 3.45726 3.52577 3.80183 3.84167 4.08402 4.29949 4.40107 4.45652 4.49412 4.51826 4.54197 4.66015 4.71166 4.71989 4.74867 4.84352 4.97638 5.05269 5.06469 5.10249 5.19718 5.21605 5.27437 5.34730 5.41807 5.47704 5.57012 5.59714 5.65987 5.66961 5.85954 6.23345 6.42496 6.46114 6.75341 6.82279 7.01135 7.40127 8.89166 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.022654 B = 0.003130 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.704542 B = 8944.130338 C = 9631.054893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.122 4.122 3 C 0.180 3.820 4 H 0.027 0.973 5 C -0.526 4.526 6 H 0.050 0.950 7 C 0.017 3.983 8 N -0.947 5.947 9 Si 0.938 3.062 10 H -0.272 1.272 11 H -0.311 1.311 12 H -0.246 1.246 13 N -0.504 5.504 14 C 0.048 3.952 15 C -0.117 4.117 16 C -0.068 4.068 17 C -0.132 4.132 18 C 0.521 3.479 19 O -0.543 6.543 20 N -0.546 5.546 21 C 0.064 3.936 22 C 0.125 3.875 23 N -0.502 5.502 24 C 0.254 3.746 25 N -0.512 5.512 26 C 0.096 3.904 27 C 0.120 3.880 28 C 0.062 3.938 29 H 0.050 0.950 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.027 0.973 34 H 0.261 0.739 35 H 0.090 0.910 36 H 0.034 0.966 37 H 0.085 0.915 38 H 0.052 0.948 39 H 0.104 0.896 40 H 0.126 0.874 41 H 0.202 0.798 42 H 0.226 0.774 43 H 0.176 0.824 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.048 0.952 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.739 4.250 -12.451 19.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.160 4.160 3 C 0.071 3.929 4 H 0.045 0.955 5 C -0.565 4.565 6 H 0.068 0.932 7 C -0.181 4.181 8 N -0.588 5.588 9 Si 0.767 3.233 10 H -0.198 1.198 11 H -0.240 1.240 12 H -0.170 1.170 13 N -0.227 5.227 14 C -0.080 4.080 15 C -0.155 4.155 16 C -0.069 4.069 17 C -0.172 4.172 18 C 0.312 3.688 19 O -0.421 6.421 20 N -0.268 5.268 21 C -0.036 4.036 22 C -0.045 4.045 23 N -0.215 5.215 24 C -0.034 4.034 25 N -0.226 5.226 26 C -0.072 4.072 27 C 0.000 4.000 28 C -0.066 4.066 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.053 0.947 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.122 0.878 40 H 0.144 0.856 41 H 0.218 0.782 42 H 0.242 0.758 43 H 0.193 0.807 44 H 0.131 0.869 45 H 0.131 0.869 46 H 0.066 0.934 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.268 4.735 -13.595 20.269 hybrid contribution 2.113 -0.830 1.839 2.921 sum -12.156 3.906 -11.755 17.355 Atomic orbital electron populations 1.21646 0.94315 1.00644 1.02506 1.21837 0.96689 0.97579 0.99899 1.19766 0.91479 0.91949 0.89745 0.95476 1.21948 0.92660 1.36311 1.05589 0.93190 1.25722 0.95407 0.96550 1.00372 1.70048 1.10666 1.47239 1.30845 0.86016 0.79796 0.79599 0.77853 1.19804 1.23958 1.16954 1.64065 1.54729 1.01612 1.02296 1.22780 0.97841 0.90481 0.96912 1.22549 0.99724 0.97652 0.95598 1.21260 0.93999 0.97287 0.94376 1.22177 1.00511 1.03521 0.90976 1.21636 0.80784 0.77140 0.89258 1.90606 1.56803 1.56506 1.38211 1.46045 1.11009 1.53701 1.16080 1.19745 0.95091 0.98190 0.90537 1.23457 0.89026 0.92923 0.99098 1.68472 1.39350 1.11952 1.01715 1.25501 0.87628 0.95197 0.95032 1.68490 1.10230 1.12089 1.31748 1.23801 1.01877 0.93520 0.88039 1.22388 0.95353 1.03760 0.78481 1.22797 0.98985 0.95203 0.89641 0.93070 0.94027 0.90470 0.92100 0.95485 0.93016 0.89207 0.94692 0.89603 0.92949 0.87805 0.85617 0.78184 0.75776 0.80701 0.86902 0.86861 0.93368 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 9.74 71.98 0.70 -3.05 16 2 C -0.12 -4.39 4.82 30.59 0.15 -4.24 16 3 C 0.18 7.02 1.17 44.17 0.05 7.07 16 4 H 0.03 1.15 7.20 -2.39 -0.02 1.13 16 5 C -0.53 -25.82 6.94 25.60 0.18 -25.65 16 6 H 0.05 2.69 6.86 -2.91 -0.02 2.67 16 7 C 0.02 0.93 5.45 84.65 0.46 1.39 16 8 N -0.95 -55.82 13.96 21.45 0.30 -55.52 16 9 Si 0.94 42.44 24.41 68.60 1.67 44.11 16 10 H -0.27 -11.85 6.82 99.48 0.68 -11.18 16 11 H -0.31 -14.55 7.11 99.48 0.71 -13.84 16 12 H -0.25 -10.24 6.54 99.48 0.65 -9.59 16 13 N -0.50 -15.31 4.73 -866.41 -4.09 -19.40 16 14 C 0.05 1.38 6.29 86.73 0.55 1.92 16 15 C -0.12 -2.95 5.74 31.28 0.18 -2.77 16 16 C -0.07 -1.47 0.73 -52.12 -0.04 -1.51 16 17 C -0.13 -3.01 6.05 30.13 0.18 -2.82 16 18 C 0.52 12.93 7.96 87.99 0.70 13.63 16 19 O -0.54 -16.92 14.88 -3.05 -0.05 -16.97 16 20 N -0.55 -10.91 3.16 -628.29 -1.98 -12.89 16 21 C 0.06 1.35 6.65 38.32 0.25 1.60 16 22 C 0.13 2.15 10.69 84.87 0.91 3.05 16 23 N -0.50 -9.63 10.43 -199.58 -2.08 -11.71 16 24 C 0.25 4.81 12.28 180.88 2.22 7.03 16 25 N -0.51 -12.17 10.43 -199.58 -2.08 -14.25 16 26 C 0.10 2.39 10.56 84.87 0.90 3.28 16 27 C 0.12 1.88 5.53 86.17 0.48 2.36 16 28 C 0.06 1.66 3.99 86.10 0.34 2.01 16 29 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.90 7.89 -2.38 -0.02 1.88 16 32 H 0.06 2.12 7.09 -2.39 -0.02 2.10 16 33 H 0.03 1.08 3.19 -2.38 -0.01 1.07 16 34 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 35 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.03 1.26 7.03 -2.39 -0.02 1.24 16 37 H 0.09 1.80 7.97 -2.39 -0.02 1.78 16 38 H 0.05 1.62 7.80 -2.38 -0.02 1.60 16 39 H 0.10 2.62 7.66 -2.39 -0.02 2.60 16 40 H 0.13 2.61 7.95 -2.39 -0.02 2.59 16 41 H 0.20 2.11 7.06 -2.91 -0.02 2.09 16 42 H 0.23 2.59 8.06 -2.91 -0.02 2.57 16 43 H 0.18 4.95 5.37 -2.91 -0.02 4.94 16 44 H 0.11 1.37 7.65 -2.39 -0.02 1.35 16 45 H 0.11 1.40 7.35 -2.38 -0.02 1.38 16 46 H 0.05 1.69 5.99 -2.39 -0.01 1.68 16 47 H 0.10 2.11 7.69 -2.39 -0.02 2.09 16 Total: -1.00 -65.54 359.57 0.80 -64.74 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.91 Total: 18.58 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 8.21 Total: 3.30 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -9.94 Total: -113.76 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.05 Total: -16.97 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.67 Total: 44.11 kcal Total: -65.54 0.80 -64.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172274.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.416 kcal (2) G-P(sol) polarization free energy of solvation -65.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds